@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu36580: (2016-07-31 )
MNFYRVEQMPGFIKTEMQKIQKAVQPFMKKTVIYRFLAIPLAAFSLFNLAAFLFHASADRESLISAGIFALLAALGLAFFKEAGYQHKQIQKTVHIYMLNRIKKSEILSEERKSSYARQIKEEPFAMRSFVEFLTEEDRRKKMY
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20...---.....30........-----------------40......-----..--------------50.....---.------------------------------..60...---------..------...70....-....------80..---.....-..90......-----..100--....------.....110.....----..120...-.-...--------130----...-----....140..------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MN
F
Y
R
V
E
QMP
G
F
I
K
T
E
M
Q
K
I
Q
K
A
V
---
Q
P
F
M
K
K
T
V
I
Y
R
F
L
A
I
-----------------
P
L
A
A
F
S
L
F
-----
N
L
--------------
A
A
F
L
F
HA---S------------------------------A
D
R
E
S
L
I
---------
S
A
------
G
I
F
A
L
L
A
A
L
-
G
L
A
F
------
F
-
K
E---AGY
Q
H
-
K
Q
I
Q
K
T
V
H
I
Y
-----
M
L
N
----
R
I
K
K
------
S
E
I
L
S
E
E
R
K
S
S
Y
A
----
R
Q
I
K
EE
P
F
-
A
-
M
R
S
--------
F
V
E
----
F
L
T
-----
E
E
D
R
RKKMY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
64.06
18%
-128
* C2 *
1ED1
2
POL_SIVMK
A:
[6-119]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
L
S
G
K
K
A
D
E
L
E
K
I
R
--
L
---
R
P
G
G
K
K
K
Y
M
L
K
H
V
V
W
-----------------
A
A
N
E
L
D
R
F
-----
G
L
--------------
A
E
S
L
L
E
N
--------------------------------------------------
K
E
------
G
C
Q
K
I
L
S
V
L
-
A
P
L
V
--------
P
T
---
G
S
E
N
L
-
K
S
L
Y
N
T
V
C
V
I
-----
W
C
I
H
A
EE
K
V
K
H
------
T
E
E
A
K
Q
I
V
Q
R
H
L
V
----
V
E
T
------------------------------------
G
T
A
E
T
M
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
58.08
26%
-44
- C3 -
3EJD
1
BIOI_BACSU
B:
[105-227]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
Y
Q
P
Y
I
I
E
T
V
H
H
L
L
D
Q
V
---
Q
G
K
K
K
M
E
V
I
S
D
F
-
A
F
-----------------
P
L
A
S
F
V
I
A
-----
N
I
I
GVPEED
R
E
Q
L
K
E
W
A
A
S
L
I
Q
T
I
DF
T
------------------------------
R
S
R
K
A
L
T
---------
E
G
------
N
I
M
A
V
Q
A
----
M
A
Y
------
F
-
K
E
---
L
I
Q
K
R
-
K
R
H
P
Q
Q
D
M
I
S
-----
M
L
L
----
K
G
---------
D
K
L
T
E
E
E
A
A
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
54.86
26%
-78
- C3 -
3EJE
1
BIOI_BACSU
B:
[105-229]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
Y
Q
P
Y
I
I
E
T
V
H
H
L
L
D
Q
V
---
Q
G
K
K
K
M
E
V
I
S
D
F
-
A
F
-----------------
P
L
A
S
F
V
I
A
-----
N
I
I
GVPEED
R
E
Q
L
K
E
W
A
A
S
L
I
Q
T
I
DF
T
------------------------------
R
S
R
K
A
L
T
---------
E
G
------
N
I
M
A
V
Q
A
----
M
A
Y
------
F
-
K
E
---
L
I
Q
K
R
-
K
R
H
P
Q
Q
D
M
I
S
-----
M
L
L
----
K
-----------
K
L
T
E
E
E
A
A
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
52.00
26%
-51
- C3 -
3EJB
1
BIOI_BACSU
B:
[105-228]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
Y
Q
P
Y
I
I
E
T
V
H
H
L
L
D
Q
V
---
Q
G
K
K
K
M
E
V
I
S
D
F
-
A
F
-----------------
P
L
A
S
F
V
I
A
-----
N
I
I
GVPEED
R
E
Q
L
K
E
W
A
A
S
L
I
Q
T
I
DF
T
------------------------------
R
S
R
K
A
L
T
---------
E
G
------
N
I
M
A
V
Q
A
----
M
A
Y
------
F
-
K
E
---
L
I
Q
K
R
-
K
R
H
P
Q
Q
D
M
I
S
-----
M
L
L
----
K
G
----------
K
L
T
E
E
E
A
A
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
48.10
17%
65
- C2 -
3SXW
-
G6PI_PYRFU
A:
[2-189]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------MM
Y
K
E
P
F
G
V
K
V
DFETGIIEGAK
K
S
V
R
R
L
S
D
M
E
G
Y
F
V
D
E
R
A
W
K
E
L
V
E
---
K
E
---
D
P
V
V
Y
E
V
Y
A
V
E
Q
EEKEG
D
L
N
F
S
T
H
V
I
Y
P
G
K
V
G
K
E
F
-----
F
F
--------------
A
K
G
H
F
H
A
---
K
------------------------------
L
D
R
A
Q
V
A
---------
V
A
LK
G
K
--
G
G
V
L
M
Q
T
P
E
-
G
D
A
K
------
W
-
I
S
---
S
E
P
G
T
-
V
I
Y
S
P
P
Y
W
A
A
-----
R
A
V
----
N
I
G
D
------
E
P
F
I
M
L
V
I
Y
P
A
D
A
GHDY
G
T
I
A
E
K
G
F
-
S
-
K
I
V
--------
I
E
E
----
N
G
E
-----
V
K
V
V
D
N
P
R
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
46.77
21%
13
- C4 -
2Q06
-
?
A:
[22-496]
A
T
E
I
R
A
S
V
G
R
M
V
G
G
I
G
R
F
Y
I
Q
M
C
T
E
L
KLS
D
Q
E
G
R
L
I
Q
N
S
I
T
I
E
R
M
V
L
S
A
F
DERRNRYKDPK
K
T
G
G
PIYRRRD
G
K
W
V
R
E
L
I
L
Y
D
K
E
E
I
R
R
I
W
R
Q
A
N
NGEDAT
A
G
L
T
H
M
M
I
W
H
S
N
L
N
D
A
T
YQR
T
R
A
L
V
R
T
GMDPRMCSLMQGSTLPRRSG
A
A
G
A
A
I
KG
V
G
T
M
V
M
E
L
I
R
M
I
K
R
G
I
NDRNFWRGENG
R
R
T
R
I
A
Y
E
R
M
C
N
I
L
K
G
K
F
Q
T
A
A
Q
K
A
M
M
D
Q
V
R
E
S
R
---
N
P
G
----------
N
A
-----------------
E
I
E
D
L
I
F
L
-----
A
R
--------------
S
A
L
I
L
R
G
---
S
------------------------------
I
A
H
K
S
C
L
---------
P
A
------
C
V
Y
G
L
A
V
A
S
-
G
Y
D
-------
F
-
E
R
---
E
G
Y
S
L
-------
V
G
I
D
-----
P
F
R
----
L
L
Q
N
------
S
Q
V
F
S
L
I
R
P
N
------------
E
N
P
-
A
-
H
K
S
--------
Q
L
V
----
W
M
A
C
H
SAA
F
E
D
L
R
V
S
S
F
I
R
G
T
R
V
I
P
RGQLSTRGVQIASNENVEA
M
D
S
S
T
L
ELRSR
Y
W
A
I
R
T
RSG
G
N
T
N
Q
Q
RA
S
A
G
Q
I
S
VQPTFS
V
Q
R
N
L
P
F
E
R
A
T
I
M
A
A
F
KGNTEGRT
S
D
M
R
T
E
I
I
R
M
M
E
S
ARPEDVSFQG
R
G
V
F
E
LSDEKAT
N
P
I
V
P
S
F
DMSNEGSYFFGDNAEEY------------------------------------------------------------------------------------------------
19
HHSearch
43.87
21%
-190
- C3 -
1ZOQ
-
CBP_HUMAN
C:
[2069-2101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-----
L
L
R
----
T
L
K
S
------
P
S
--
S
P
Q
Q
Q
Q
Q
V
L
----
N
I
L
K
S
N
P
Q
-
L
-
M
A
A
--------
F
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
43.73
35%
-363
- C3 -
4DVE
4
BIOY_LACLM
A:
[66-88]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
T
I
---------
S
V
------
G
A
F
L
A
L
A
L
I
-
G
L
P
V
------
L
-
T
G
---
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
41.15
17%
-10
- C3 -
2XQO
3
?
A:
[34-243]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
Y
F
P
----
P
G
T
S
K
H
E
L
I
A
R
A
S
S
L
---
K
V
S
E
V
K
A
I
I
K
K
Q
V
D
E
-----------------
H
W
D
V
I
R
D
V
CGFKN
K
E
--------------
V
A
Y
A
F
F
F
---
G
M
-----------------------------
A
T
R
E
S
T
F
RAA
T
E
T
G
S
G
A
S
------
H
A
F
G
P
L
Q
T
A
-
E
T
A
Y
ANANPN
Y
M
P
E
---
H
N
V
P
E
M
H
Q
Y
D
F
T
E
Y
N
F
Y
D
V
G
I
S
V
H
M
---
G
I
R
H
------
F
L
H
F
A
R
L
A
K
E
K
Y
S
G---
R
D
I
A
R
H
G
L
M
G
-
Y
N
T
--------
G
W
I
----
D
G
A
-----
D
E
S
W
I
V
R
Y
A
D
E
T
A
A
L
G
A
W
Y
L
R
N
NHMSDDEFTWDTDPRVDRSNPWEIYY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
40.88
26%
-212
- C3 -
3QWO
-
?
C:
[13-44]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
N
------
L
P
N
L
N
E
E
Q
R
S
A
F
L
----
S
S
I
N
D
D
P
S
-
Q
S
A
N
L
--------
L
A
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
39.64
11%
-54
* C4 *
1NG5
-
?
A:
[5-215]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
R
A
N
Y
E
K
L
Q
Q
K
F
Q
M
L
M
S
K
H
Q
A
H
V
---
R
P
Q
F
E
S
L
E
K
I
N
K
D
I
V
-----------------
G
W
I
K
L
S
G
T
-----
S
L
--------------
N
Y
P
V
L
Q
G
---
K
TNHDYLNLDFEREHRRKGSIFMDFRNELKN
L
N
H
N
T
I
L
---------
Y
G
H
HVGDN
T
M
F
D
V
L
E
D
Y
L
K
Q
S
F
------
Y
-
E
K
H
K
I
I
E
F
D
N
-
K
Y
G
K
Y
Q
L
Q
V
F
-----
S
A
Y
----
K
T
T
T
KDNYIR
T
D
F
E
N
D
Q
D
Y
Q
Q
F
L
----
D
E
T
K
R
K
S
V
-
I
-
N
S
D
V
N
V
T
VK
D
K
I
M
T
----
L
S
T
-----
C
E
D
A
Y
S
E
T
T
K
R
I
V
V
V
A
K
I
I
K
VS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
38.34
15%
3
- C2 -
5CX8
7
?
A:
[10-481]
---------------------------------------------------------------------------------------------------------------DFQQPYTS
F
V
Q
T
K
Q
N
R
D
G
L
Y
A
L
L
R
N
T
ENPRMH
F
Y
Q
E
L
Q
SDM
Y
C
T
T
ITDGNSL
A
P
F
V
N
WD
L
G
I
L
N
D
H
G
R
A
D
ED
E
V
S
G
I
A
G
Y
Y
F
V
Y
N
R
L
N
Q
Q
A
N
A
F
V
N
N
T
E
A
A
L
Q
N
Q
V
YKN
S
T
E
I
A
N
A
K
S
F
L
A
E
G
K
-----------------
V
L
Q
A
L
A
I
W
-----
R
L
M
-------------
D
R
F
S
F
H
E
---
S
------------------------------
V
T
E
V
N
S
G
---------
A
K
------
D
----
L
G
V
I
-
L
L
K
E
------
Y
-
N
P
---
G
Y
I
G
P
-
R
A
T
K
A
Q
C
Y
D
Y
-----
I
L
S
----
R
L
S
E
------
A
I
E
V
L
P
E
N
R
E
S
V
L
----
Y
V
S
R
D
Y
A
Y
-
A
-
L
R
A
--------
R
I
Y
----
L
A
L
-----
G
E
Y
G
K
A
A
A
D
A
K
M
V
V
DKYPLIGAAD
A
S
E
F
E
N
I
Y
R
SDANNPEIIFRGFASATLGSFTATTLNG
A
A
P
A
GK
D
I
K
Y
N
P
S
A
V
P
F
Q
W
V
V
D
LYENEDFRKSVYIAKVVKKDKGYLVNKFLEDKAYRDVQDKPNL
K
V
G
A
R
YFS
V
A
E
V
Y
L
I
L
V
E
S
A
L
Q
T
GD
T
P
T
A
E
K
Y
L
K
A
L
S
K
A
R
GAEVSVVN
M
E
A
L
Q
A
E
R
T
R
E
L
IGEGS
R
L
R
D
M
V
R
W
SIPNNHDAFETQPGLEGFANTTPLK
A
Q
A
P
VGFYAYTWEFP
Q
R
D
R
Q
T
N
PQ
L
I
K
N
W
PI
10
HHSearch
36.70
23%
-193
- C3 -
4NPD
1
A:
[16-47]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
H
------
L
P
N
L
T
E
E
Q
R
N
G
F
I
----
Q
S
L
K
D
D
P
S
-
V
S
K
E
I
--------
L
A
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
33.58
15%
-109
- C2 -
1GH9
-
PA84_METTH
A:
[1-71]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
I
I
F
R
C
D
C
-
G
R
A
L
------
Y
-
S
R
---
E
G
A
K
T
-
R
K
C
V
C
G
R
T
V
N
-----
V
K
D
----
R
R
I
F
------
G
R
A
D
D
F
E
E
A
S
E
L
V
----
R
K
L
Q
E
E
K
Y
-
G
-
S
C
H
--------
F
T
N
----
P
S
K
-----
R
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
33.13
27%
-8
- C3 -
3LZD
-
DPH2_PYRHO
A:
[38-81]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
----
E
I
P
K
------
S
E
I
L
K
E
L
K
R
I
G
A
K
----
R
V
L
I
Q
S
P
E
-
G
-
L
R
R
--------
E
A
E
E
L
A
G
F
L
E
-----
E
N
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
31.99
27%
-6
- C3 -
3LZC
-
DPH2_PYRHO
A:
[1-45]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
H
----
E
I
P
K
------
S
E
I
L
K
E
L
K
R
I
G
A
K
----
R
V
L
I
Q
S
P
E
-
G
-
L
R
R
--------
E
A
E
E
L
A
G
F
L
E
-----
E
N
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
30.76
19%
-148
- C3 -
2KZI
-
?
A:
[16-47]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
L
------
L
P
N
L
N
N
Q
Q
K
R
A
F
I
----
R
S
L
Y
D
D
P
S
-
Q
S
A
N
L
--------
L
A
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
28.69
18%
-64
- C3 -
1L6X
-
?
B:
[12-33]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
H
------
D
P
N
L
N
E
E
Q
R
N
A
K
I
----
K
S
I
R
D
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
28.24
22%
-153
- C3 -
2LR2
-
?
A:
[29-51]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
H
------
L
P
N
L
N
E
E
Q
R
N
A
F
I
----
Q
S
L
K
D
D
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
27.65
38%
51
- C3 -
4XB6
-
PHNI_ECOLI
C:
[144-192]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
------------------------------
A
D
S
E
Q
Q
P
---------
S
P
------
H
V
F
S
L
L
A
R
Q
-
G
L
A
K
------
F
-
E
E
D--
S
G
A
Q
P
-
D
D
I
T
R
T
P
P
V
Y
-----
P
C
S
----
R
S
S
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------