@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu36780: (2016-08-01 )
MSVLGQQAAIGIVVHLIFIAVTWWALQAVNIDPLIKKGKVVQARLLMILLTIAIGTAVANFFLDYLNYSQQLPYLF
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........---20....----....-30...-------------..-...40........50......-------..60..------..---....70.....---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSVL
G
Q
Q
A
A
I
G
I
V
V
H
L
I
F
I
---
A
V
T
W
W
A
----
L
Q
AV-NIDPL-------------IK-KG
K
V
V
Q
A
R
L
L
M
I
L
L
T
I
A
I
G
T
A
-------
V
A
N
F
F
L
------
D
Y
---
L
N
Y
S
QQLPYLF---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
57.61
20%
-174
- C6 -
4IWS
-
FDC_PSEAE
A:
[23-515]
M
N
R
S
A
L
D
F
R
H
F
V
D
H
L
R
R
Q
GD
L
V
D
V
HTEVDANL
E
I
G
A
I
T
R
R
V
Y
E
R
RA
P
A
P
L
F
HNIRDSLPG
A
R
V
L
G
APAGLRADRARAH
S
R
L
A
L
H
F
GLPEHSG
P
R
D
I
V
A
M
L
R
A
A
M
R
A
E
P
I
APRRLERGPVQE
N
V
W
L
GEQVDLTRFPVPLLHEQDGGRYFGTY
G
F
H
V
V
Q
T
PDGS
W
D
S
W
S
V
G
R
L
M
L
V
D
RN
T
L
A
G
P
T
I
PTQ
H
I
G
I
I
R
E
Q
W
R
R
L
GK
P
T
P
W
A
M
A
L
GAP
P
A
A
L
A
A
A
G
MPLPEGVSEAGYVGALVG
E
P
V
E
V
V
R
T
QTNGLWVPANTE
I
V
L
E
G
E
ISLDETALEGPMGEYHGYSFP
I
G
K
P
Q
P
L
F
H
V
H
A
L
S
F
R
DQ
P
I
L
P
I
C
VAGTPPE
E
N
H
T
I
W
G
T
M
I
S
A
Q
L
L
D
V
A
Q
N
A
G
L
P
V
D
M
V
W
C
SYE
A
A
T
C
W
A
----
V
L
S
I
-
D
V
Q
R
L
-------------
A
A
-
L
G
T
D
-
A
A
A
F
A
A
R
V
A
E
T
V
F
G
S
H
-------
A
G
H
L
-------------------
V
P
K
L
I
L
V
G
NDIDVTE
I
D
Q
V
V
W
A
L
A
T
RAHPLHDHFAFPQIRDFPMVPYLD
A
E
D
K
A
R
GSGG
R
L
V
I
N
CLY
P
E
Q
F
A
GQMRAATASFRHAYP
T
A
L
R
R
R
V
E
E
R
W
SDYGF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
57.51
32%
-153
- C6 -
4QSH
-
?
A:
[636-679]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
S
A
Q
S
G
V
D
V
F
R
V
F
D
---
S
L
N
W
I
K
----
G
M
E
V
-
S
I
D
A
V
-------------
R
E
-
A
G
K
I
V
E
A
A
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
56.96
32%
-169
- C6 -
4QSK
-
?
A:
[635-678]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
S
A
Q
S
G
V
D
V
F
R
V
F
D
---
S
L
N
W
I
K
----
G
M
E
V
-
S
I
D
A
V
-------------
R
E
-
A
G
K
I
V
E
A
A
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
56.10
32%
-152
- C6 -
4QSL
-
?
H:
[634-673]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
S
A
Q
S
G
V
D
V
F
R
V
F
D
---
S
L
N
W
I
K
----
G
M
E
V
-
S
I
D
A
V
-------------
R
E
-
A
G
K
I
V
E
A
A
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
55.43
28%
-148
- C6 -
4CZB
1
NAH1_METJA
A:
[1-415]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
E
L
M
M
A
I
G
Y
L
G
L
A
L
V
L
G
S
L
V
A
K
I
A
E
K
L
KIPD
I
P
L
L
L
L
L
G
L
I
I
G
PFLQIIP
S
D
S
A
M
E
I
F
E
Y
A
G
P
I
G
L
I
F
I
L
L
G
G
---
A
F
T
----------
M
-
R
I
S
L
L
-------------
K
R
V
I
K
T
V
V
R
L
D
T
I
T
F
L
I
T
L
L
I
S
G
F
-------
I
F
N
M
V
L
------
N
----
L
P
Y
T
S
P
V
G
Y
L
F
G
A
I
T
A
A
T
D
P
A
T
L
I
P
V
F
S
R
V
RTN
P
E
V
A
I
T
L
E
A
E
S
I
F
N
D
P
L
G
I
V
S
T
S
V
I
L
G
L
F
GLFSSSN
P
L
I
D
L
I
T
L
A
G
G
A
I
V
V
G
L
L
L
A
K
I
Y
E
K
I
I
I
H
CDFHEY
V
A
P
L
V
L
G
G
A
M
L
L
L
Y
V
G
DD
L
L
P
S
I
CG
Y
G
F
S
G
Y
M
A
V
A
I
M
G
L
Y
L
G
D
A
L
F
R
A
DDID
Y
K
Y
I
V
S
F
C
D
D
L
S
L
L
A
R
V
F
I
F
V
F
L
G
A
C
IK
L
S
M
L
E
N
Y
F
I
P
G
L
L
V
A
L
G
S
I
FL
A
R
P
L
G
V
F
L
G
L
I
GSKHS
F
K
E
K
L
Y
F
A
L
E
G
P
R
G
V
V
P
A
A
L
A
V
T
V
G
I
E
I
L
K
N
ADKIPA
S
I
T
K
Y
IT
P
T
D
I
A
G
T
I
I
I
G
T
F
M
T
I
L
L
S
V
I
L
E
A
S
W
A
G
M
L
A
L
K
L
LGE
7
Fugue
52.21
22%
-58
- C6 -
2JVE
-
?
A:
[18-88]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
A
L
K
C
F
T
R
NGDDRT
V
T
T
C
A
E
E
Q
T
R
C
L
F
V
Q
L
P
Y
----------------------
S
E
-------------
I
Q
-
E
C
K
T
V
Q
Q
C
A
E
V
L
E
E
V
T
A
I
G
Y
P
-------
A
K
C
C
C
E
------
D
L
---
C
N
R
S
E
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
51.21
15%
-96
* C7 *
2JO6
-
NIRD_ECOLI
A:
[1-110]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSQWKDICK
I
D
D
I
L
P
E
T
G
V
C
A
L
L
G
D
E
Q
V
---
A
I
F
R
P
Y
HSD
Q
V
F
A
I
S
N
I
D
P
F
FESSVLSR
G
L
I
A
E
H
Q
-
G
E
L
W
V
A
S
P
L
K
K
Q
R
F
R
L
S
D
G
L
C
MEDEQFS
V
K
H
Y
E
A
------
R
V
---
K
D
G
V
V
Q
L
R
G
G
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
49.76
22%
-104
- C7 -
1DTD
2
MCPI_HIRME
B:
[1-61]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D
E
S
F
L
C
Y
Q
P
--
D
Q
V
C
C
F
I
C
R
------------------
G
A
A
P
L
-------------
P
S
-
E
G
E
C
N
P
H
P
------
T
A
P
W
C
R
E
-------
G
A
V
E
W
V
------
P
Y
ST
G
Q
C
R
T
T
C
I
P
Y
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
49.69
24%
-67
- C6 -
2I7U
-
?
A:
[1-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
L
R
E
E
A
A
K
------------
L
F
E
E
W
K
----
K
L
A
E
-
E
A
A
K
L
-------------
L
E
-
G
G
G
G
G
G
G
G
E
L
M
K
L
C
E
E
A
A
K
K
A
-------
E
E
L
F
K
L
------
A
E
---
E
R
L
K
K
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
40.38
30%
-208
- C6 -
1Q90
3
PETG_CHLRE
G:
[1-30]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
E
P
L
L
C
G
I
V
L
G
L
V
P
V
T
I
-------
A
G
L
F
V
T
------
A
Y
---
L
Q
Y
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
38.80
13%
-249
- C4 -
4C2V
-
INCEA_XENLA
C:
[34-41]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
-
K
L
E
E
L
-------------
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
36.88
17%
-308
- C5 -
1I8N
-
LAPP_HAEOF
A:
[103-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
-
T
W
S
S
L
-------------
Q
Y
-
D
Q
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
35.72
11%
-
- C2 -
2MTP
-
B:
[992-1000]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-------------
F
K
-
R
N
R
P
P
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
32.13
12%
-134
- C6 -
2K5J
-
?
A:
[1-80]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
S
L
A
G
I
D
M
G
R
I
L
L
D
L
S
-----
N
E
V
I
K
Q
----
L
D
D
L
-
E
V
Q
R
N
-------------
L
P
-
R
A
D
L
L
R
E
A
V
D
Q
Y
L
I
N
Q
S
Q
T
A
R
-------
T
S
V
P
G
I
WQGCEE
D
G
---
V
E
Y
Q
R
K
L
R
E
E
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
30.82
30%
-55
- C6 -
1XAT
-
CAT4_PSEAE
A:
[191-210]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
----
L
C
T
G
-
D
I
P
A
L
-------------
Y
Q
-
H
W
K
Q
R
Q
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
30.13
21%
-249
- C3 -
4C2W
-
INCEA_XENLA
C:
[33-42]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
S
P
-
K
L
E
E
L
-------------
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
28.87
21%
-88
- C6 -
3SI5
-
CASC5_HUMAN
X:
[9-22]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
I
-
D
F
N
D
F
-------------
I
K
-
R
L
K
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
25.78
18%
16
- C6 -
5CMZ
-
?
B:
[2-33]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
W
E
----
E
W
D
K
-
K
I
E
E
L
-------------
I
K
-
K
S
E
E
L
I
K
K
I
E
E
Q
I
K
K
Q
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
25.24
11%
-
- C1 -
1Q90
1
L:
[3-11]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
T
S
Y
V
G
L
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
19.12
17%
-43
- C6 -
2LS4
-
A:
[4-21]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
C
I
A
V
A
A
G
A
G
-------
T
G
Y
F
L
F
------
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------