@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu36910: (2016-08-01 )
MNELKQTWKTMLSEFQDQAELKQDQLFVLGCSTSEVAGSRIGTSGSVDIAESIYSGLAELREKTGIHLAFQCCEHLNRALVVEAETAKLFRLPTVSAVPVPKAGGAMASYAFKQMKSPVLVETIQADAGIDIGDTFIGMHLKPVAVPVRVSQNSLGSAHVTLARTRPKLIGGVRAVYECE
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--..10.....----...20...------..----..----.30...----.....40....-------....50......---------..-60--------..--......70....--....-----80.....--....90........100..-----------.....110.......120-----....--.------..--..130----------.--------------......140.....-..150.......160.....-..170.......180------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
N
E
L
K
Q
T
--
W
K
T
M
L
S
E
F
Q
----
D
Q
A
E
LKQD------
Q
L
----
F
V
----
L
GCSTS----EVAGSRIGTSG-------S
V
D
I
A
E
S
I
Y
S
G
L
---------
A
E
-
L
R
--------
E
K--TG
I
H
L
A
F
Q
C
C
E
H--L
N
R
A
-----
L
-
V
V
EAE--T
A
K
L
F
RLPTVSAVPVPKAG-----------
G
A
M
A
S
Y
A
F
K
QMKSP
V
L
-------
V
E
T
I--Q------AD--AGIDI----------
G
--------------
D
T
F
I
G
M
H
L
K
P
V
A
V
P
-
V
R
VSQNSLGS
A
H
V
T
L
ART
R
P
-
K
L
I
G
G
V
R
A
V
Y
ECE--------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
88.75
48%
-100
- C5 -
1V8D
2
Y214_THET2 (first)
A:
[40-232]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
G
I
R
R
A
--
A
Q
R
A
A
E
E
F
L
----
Q
A
F
P
M
A
P
G
------
S
L
----
F
V
----
L
G
G
S
T
S
----
E
V
L
G
----
T
R
P
-------
S
L
E
A
A
H
A
V
L
E
G
L
---------
L
P
-
P
L
--------
L
E
--
R
G
V
H
V
A
V
Q
A
C
E
H
--
L
N
R
A
-----
L
-
V
V
E
R
E
--
T
A
R
A
F
G
K
E
E
V
A
V
F
P
H
P
K
A
G
-----------
G
A
K
A
T
A
A
F
L
R
F
R
D
P
V
M
-------
V
E
S
L
--
K
------
A
Q
AH
G
G
M
D
I
----------
G
--------------
G
V
L
I
G
M
H
L
R
P
V
A
V
P
-
L
R
L
S
V
R
K
I
G
E
A
V
L
L
A
A
K
T
R
P
-
K
L
V
G
G
A
R
A
V
Y
T
R
E
E
M
L
K
K
L
E
E
F
LP---------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
88.36
49%
-102
- C5 -
1V8D
2
Y214_THET2 (first)
A:
[40-220]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
G
I
R
R
A
--
A
Q
R
A
A
E
E
F
L
----
Q
A
F
P
M
A
P
G
------
S
L
----
F
V
----
L
G
G
S
T
S
----
E
V
L
----
G
T
R
P
-------
S
L
E
A
A
H
A
V
L
E
G
L
---------
L
P
-
P
L
--------
L
E
--
R
G
V
H
V
A
V
Q
A
C
E
H
--
L
N
R
A
-----
L
-
V
V
E
R
E
--
T
A
R
A
F
G
K
E
E
V
A
V
F
P
H
P
K
A
G
-----------
G
A
K
A
T
A
A
F
L
R
F
R
D
P
V
M
-------
V
E
S
L
KA
Q
------
A
H
--
G
G
M
D
I
----------
G
--------------
G
V
L
I
G
M
H
L
R
P
V
A
V
P
-
L
R
L
S
V
R
K
I
G
E
A
V
L
L
A
A
K
T
R
P
-
K
L
V
G
G
A
R
A
V
Y
T
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
88.17
48%
-102
- C5 -
1V8D
2
Y214_THET2 (first)
A:
[40-221]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
G
I
R
R
A
--
A
Q
R
A
A
E
E
F
L
----
Q
A
F
P
M
A
P
G
------
S
L
----
F
V
----
L
G
G
S
T
S
----
E
V
L
----
G
T
R
P
-------
S
L
E
A
A
H
A
V
L
E
G
L
---------
L
P
-
P
L
--------
L
E
--
R
G
V
H
V
A
V
Q
A
C
E
H
--
L
N
R
A
-----
L
-
V
V
E
R
E
--
T
A
R
A
F
G
K
E
E
V
A
V
F
P
H
P
K
A
G
-----------
G
A
K
A
T
A
A
F
L
R
F
R
D
P
V
M
-------
V
E
S
L
KA
Q
------
A
H
--
G
G
M
D
I
----------
G
--------------
G
V
L
I
G
M
H
L
R
P
V
A
V
P
-
L
R
L
S
V
R
K
I
G
E
A
V
L
L
A
A
K
T
R
P
-
K
L
V
G
G
A
R
A
V
Y
T
R
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
40.13
23%
-93
- C5 -
3PE5
-
?
A:
[144-247]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
T
S
F
M
R
D
T
Y
V
N
V
P
E
W
G
-----------
D
T
K
L
T
H
A
Y
S
Y
G
G
P
A
L
A
-------
I
E
T
I
--
E
------
R
N
--
F
G
I
D
I
----------
D
R
Y
A
V
V
Y
FDT
F
P
G
I
V
D
T
L
G
G
I
E
V
E
M
T
Q
T
E
-
A
D
V
M
N
E
S
V
G
P
E
F
A
N
F
T
E
G
K
N
-
T
L
N
G
A
T
A
L
V
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
40.02
26%
-5
- C2 -
3DU1
-
?
X:
[0-236]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMN
V
G
E
I
L
R
H
--
Y
A
A
G
K
R
N
F
Q
HINL
Q
E
I
E
L
T
N
A
------
S
L
----
T
G
----
A
D
L
S
Y
A
----
D
L
R
Q
T
R
L
G
K
S
N
FSHTCLR
E
A
D
L
S
E
A
I
L
W
G
I
DLSEADLYR
A
I
-
L
R
--------
E
A
DL
T
G
A
K
L
V
K
T
R
L
E
E
AN
L
I
K
A
-----
S
-
L
C
G
A
N
LN
S
A
N
L
S
R
C
L
L
F
Q
A
D
L
R
P
S
S
N
QRTDLGYVLLT
G
A
D
L
S
Y
A
--
D
L
R
A
A
S
L
HHANLDG
A
K
L
C
--
R
------
A
N
--
F
G
R
T
I
QWGNLAADLS
G
--------------
A
S
L
Q
G
A
D
L
S
Y
A
N
L
E
S
A
I
L
R
K
A
N
L
Q
G
A
D
L
T
G
A
I
L
K
D
A
E
L
K
G
A
I
M
P
D
G
S
I
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
39.24
21%
-139
- C5 -
2NYG
1
YOKD_BACSU
A:
[23-65]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
L
G
L
K
K
G
------
M
T
----
V
L
----
V
H
S
S
L
S
----
S
I
-
G
W
V
N
G
G
-------------
A
V
A
V
I
Q
A
L
---------
I
D
-
V
V
--------
T
E
--
E
G
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
38.45
16%
-161
- C5 -
3SMA
1
?
A:
[32-75]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
L
G
V
R
P
G
------
G
V
----
L
L
----
V
H
A
S
L
S
----
A
L
G
-
W
V
C
G
G
-------------
A
Q
A
V
V
L
A
L
---------
Q
D
-
A
V
--------
G
K
--
E
G
T
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
38.42
27%
-108
- C5 -
3U7Q
1
NIFK_AZOVI
B:
[128-164]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
N
--
M
K
D
G
L
Q
N
C
------
K
A
T
Y
K
P
D
------
M
I
----
A
V
----
S
T
T
C
M
A
----
E
V
I
G
D
D
L
N
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
38.34
14%
-201
- C5 -
2XDQ
1
CHLN_THEEB
A:
[83-147]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
--
L
K
R
L
C
L
E
I
------
K
R
D
R
N
P
S
------
V
I
----
V
W
----
I
G
T
C
T
T
----
E
I
I
K
M
D
L
E
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
37.73
11%
-6
- C4 -
4J4H
5
?
A:
[1-259]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
A
L
L
T
PDDLIN
I
N
M
Q
L
Q
K
A
D
S
A
V
Q
E
V
TGLD
I
K
G
I
C
K
A
L
YGTFSSSE
K
V
G
I
V
P
V
TSGNGIIGN
F
S
A
S
L
H
A
I
T
Q
Y
F
G
F
D
S
F
V
T
D
M
P
----
D
V
S
G
Y
Y
E
A
------
V
Q
N
GAE
I
I
----
L
M
A
D
D
R
----
T
F
L
A
H
N
L
K
N
G
K
-------
M
A
N
N
Q
P
C
T
G
I
I
Y
---------
A
E
-
I
A
S
R
YLKADS
K
D
--
V
L
V
V
G
L
G
K
V
G
F
P
--
G
A
E
H
-----
L
-
V
Q
K
D
F
--
R
V
Y
G
Y
D
A
D
E
T
L
L
E
R
A
T
S
N
L
-----------
G
I
I
P
F
D
P
A
N
P
K
K
F
S
I
I
-------
F
E
A
T
--
P
------
C
A
--
N
T
I
P
E
----------
A
--------------
V
L
S
E
N
C
V
L
S
T
P
G
I
P
-
C
A
I
S
E
E
L
R
D
K
Y
E
V
Q
L
I
A
E
-
P
-
L
G
I
G
T
A
S
M
L
Y
S
V
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
37.18
24%
-164
- C5 -
3IJW
2
?
A:
[26-67]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
G
L
K
K
G
------
M
T
----
V
I
----
V
H
S
S
L
S
----
S
-
I
G
W
I
S
G
G
-------------
A
V
A
V
V
E
A
L
---------
M
E
-
V
I
--------
T
E
--
E
G
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
36.77
14%
-58
- C4 -
1UCP
-
ASC_HUMAN
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
R
A
R
D
A
--
I
L
D
A
L
E
N
L
-----
T
A
E
E
L
K
K
F
------
K
L
----
K
L
L
S
VP
L
R
E
G
Y
G
----
R
I
P
R
G
A
L
L
S
M
D
-------
A
L
D
L
T
D
K
L
V
S
------------
F
-
Y
L
--------
E
T
--
Y
G
A
E
L
T
A
N
V
L
R
D
--
M
G
L
Q
-----
E
-
M
A
G
Q
L
--
Q
A
A
T
H
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
36.60
22%
-154
- C5 -
4WES
1
NIFK_CLOPA
B:
[82-118]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
--
I
K
T
A
V
K
N
I
------
F
S
L
Y
N
P
D
------
I
I
----
A
V
----
H
T
T
C
L
S
----
E
T
L
G
D
D
L
P
T
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
36.11
13%
-157
- C5 -
5HT0
2
?
A:
[9-60]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
--
L
A
E
D
L
R
A
I
--------
G
L
A
D
G
------
D
A
----
V
L
----
V
H
A
A
L
R
----
K
V
G
-
K
I
V
G
G
-------------
P
D
D
I
L
D
A
M
---------
R
D
-
V
I
--------
G
P
--
A
G
T
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
36.00
23%
-27
- C4 -
5FQE
24
?
A:
[28-607]
TT
L
G
A
S
I
G
S
TDFHYLQKD
Y
D
E
I
K
K
LNLN
T
W
N
E
V
A
W
IG
D
E
L
N
S
K
I
V
M
W
T
N
S
S
P
V
N
N
V
T
L
S
S
S
DFINENGDLISSNN
I
K
I
S
W
L
K
E
T
L
A
NIGRSNPS
A
P
L
E
P
F
PDIIHNS
G
S
L
N
I
E
K
N
K
I
A
S
A
W
I
N
I
K
I
P
RNAKP
G
I
Y
N
G
S
I
E
V
T
A
DELE
K
S
Y
T
F
D
Y
S
F
E
V
L
NLVQPLPSETN
T
Q
I
E
F
W
Q
H
P
Y
T
I
A
R
Y
Y
KICKEDLFT
E
K
H
F
K
Y
L
R
G
N
L
K
E
Y
R
N
M
G
G
R
G
V
I
A
T
IVHEAWNHQSY
D
S
D
P
S
M
I
K
W
R
K
N
SYG
T
F
E
F
D
Y
S
H
F
D
K
W
I
Q
L
N
I
D
L
GILDPEKGFGQIKCYSIVPWNN
R
I
Q
Y
F
N
EATN
K
E
E
A
I
N
P
T
PG
S
D
L
W
I
N
I
--
W
T
Q
F
L
T
S
F
M
----
S
H
L
E
E
K
----------------------------------------------------------
G
W
---------
F
N
-
I
-------------
T
Y
I
S
M
D
E
R
S
M
D
D
--
L
K
A
C
-----
V
D
L
I
E
N
I
--
T
N
N
S
Y
E
H
F
K
I
S
S
A
M
D
Y
E
S
G
-----------
N
---
D
Y
S
F
L
D
R
---------------------------------
I
----------
D
--------------
D
I
S
I
G
L
S
H
---------
I
N
H
N
S
--
D
D
M
K
N
M
A
T
H
R
Q
-
E
L
-
G
L
L
T
T
I
Y
T
C
T
GDYPSSFTISDPS
E
G
A
F
T
I
W
Y
S
L
Y
Q
NTN
G
F
L
R
WSWDGWVENPLENVSYKYWEPGDPFL
I
Y
P
A
EKDSIGKT
F
Y
S
T
P
R
L
E
K
L
K
E
G
I
R
D
I
N
K
A
K
Y
L
M
E
K
A
P
NL
K
N
S
I
E
N
L
I
Y
S
L
K
R
P
N
K
G
E
N
AYGSAVAAS
K
E
D
R
D
L
T
I
S
E
A
N
R
I
K
N
G
I
N
N
F
A
R
E
F
I
S
L
T
M
24
HHSearch
32.45
23%
-221
- C5 -
3H1Q
1
?
A:
[4-43]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
L
E
Q
K
L
N
L
L
N
D
L
I
-------
V
R
E
I
--
V
NPLPPP
Y
K
--
V
G
V
D
L
----------
G
--------------
T
A
D
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
30.48
12%
-24
- C4 -
2PXX
2
ECE2_HUMAN
A:
[1-213]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSGYRE
V
E
Y
W
D
Q
R
Y
QGAADS
A
P
Y
D
W
F
G
D
--
F
S
S
F
R
A
L
L
E
----
P
E
L
R
-
P
E
D
------
R
I
----
L
V
----
L
G
C
G
N
S
A
L
S
Y
E
L
F
L
G
G
F
P
N
V
T
-------
S
V
D
Y
S
S
V
V
V
A
A
M
---------
Q
A
C
Y
A
--------
H
V
--
P
Q
L
R
W
E
T
M
D
V
R
K
--
L
D
F
P
SASFD
V
-
V
L
E
K
G
--
T
L
D
A
L
L
A
G
E
R
D
P
W
T
V
S
S
E
G
-----------
V
H
T
V
D
Q
V
L
S
E
V
S
R
V
L
V
-------
P
G
G
R
--
F
------
I
S
--
M
T
S
A
-----------
A
--------------
P
H
F
R
T
R
H
Y
A
Q
A
Y
Y
G
-
W
S
L
R
H
A
T
Y
G
S
G
F
H
F
H
L
Y
L
M
H
-
K
G
G
K
L
S
V
A
Q
L
A
L
G
A
Q
I
L----------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
30.48
27%
-49
- C5 -
4HAC
-
?
A:
[109-202]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
G
L
G
S
S
A
-------
A
V
T
I
A
S
-----
I
---------
G
A
-
L
N
--------
E
L
--
F
G
F
G
L
S
L
Q
E
I
A
K
--
L
G
H
E
-----
I
-
E
I
K
V
Q
--
G
A
A
S
---
P
T
D
T
Y
V
S
T
--
F
G
-----------
G
V
V
T
I
P
E
R
R
K
L
K
T
P
-----------------------
D
--
C
G
I
V
I
----------
G
--------------
D
T
G
V
F
S
S
T
K
E
L
V
A
N
-
V
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
30.34
19%
38
* C4 *
2SCU
1
SUCD_ECOLI
A:
[1-119]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SILIDKN
T
K
V
I
C
Q
G
--
F
T
G
S
Q
G
T
F
H
----
S
E
Q
A
I
A
Y
G
------
T
K
----
M
V
----
G
G
V
T
P
------------
G
K
G
G
-------
T
T
H
L
G
L
P
V
F
N
T
V
---------
R
E
-
A
V
--------
A
A
--
T
G
-------------------------------------
A
T
A
S
V
I
Y
V
P
----------------------
A
P
F
C
K
D
S
I
-------
L
E
A
I
--
D
------
A
G
--
I
K
L
I
I
----------
T
--------------
I
T
E
-------------
G
I
P
T
L
D
M
L
T
V
K
V
K
L
D
E
A
G
V
-
R
M
I
G
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
29.99
23%
17
- C5 -
2JRX
-
YEJL_ECOLI
A:
[10-76]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
--
V
E
Q
L
L
A
E
L
------
L
N
V
L
E
K
H
KAP
T
D
L
S
L
----
M
V
----
L
G
N
M
V
T
----
N
L
I
N
T
S
I
A
P
A
Q
-------
R
Q
A
I
A
N
S
F
A
R
A
L
---------
Q
S
-
S
I
--------
N
E
--
D
K
A
H
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------