@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu37300: (2016-08-02 )
MKALIPKQHGAWAMLLIPFLLGMVKGGPVIWHIPLFLGWLFLYLAVYPVTLALKKKQSKPYQKWMCYYGFPTCCFLMISVFHKPPLIWVGVSLLPLFLIHMYFARRKNERALLNDVAGVLFFCSGGFASCWLGMGTLDGWAWFIFLQSALFFIGSSFYVKSVIRERKNRAFAYWSWGYHLLLPFLSALFGAGWAFLAFIPSSLRAWFFHGRDWPVKTIGILEIVNACFFLAVMCLFITR
Atome Classification :
(18 SA)
-----------------------.........10------...-......20.----....--------...30.---..---.----.---------...40..--......50........60......-----------------..----70....----------....80..--..----....--90...-----.---------....---100.-------.--------.....110.......120---....--...---.130.--------------...------...140...--------------....150.-.....--------.160-.....-..170.--...--...180-------.--------------.......190....----...200.......---210..---.....220.......230-----.......----------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------MKALIPKQHG-------A
W
A
-
M
L
L
I
P
F
L
L
G
----MVKG--------G
P
V
I
W
H---
I
P
---
L
----
F
---------
L
G
W
L
F
L
Y
--
L
A
V
Y
P
V
T
L
A
L
KKKQSK
P
Y
Q
K
W
M
C
Y-----------------YG----
F
P
T
C
C
F
----------
L
M
I
S
V
FHK--P
P
----
L
I
W
V
--
G
V
S
L
L
-----
P
---------
L
F
L
I
---
H
M
Y
F
-------
A
--------RRKN
E
R
A
L
L
N
D
V
A
G
V
L
F
----FCSG--
G
F
A
---
S
C
W
LG--------------MGT------L
D
G
W
A
W
F
I
F
--------------
L
Q
S
A
L
F
F
I-G
S
S
F
Y
--------
V
K
S
V
-
I
R
ERK-N
R
A
F
A
Y
--WS
W
--
G
Y
H
L
L
--------
L
--------------
P
F
L
S
A
L
F
G
A
G
W
A
F
L
----
A
F
I
P
S
S
L
R
A
W
FFH---GRDWP---V
K
T
I
G
I
L
E
I
V
N
A
C
F
F
L
A
V
-----
M
C
L
FITR----------------------------------------------------------
18
Fugue
71.87
21%
-69
- C5 -
4MUO
-
YBIB_ECOLI
A:
[1-320]
------------------MD
Y
R
K
I
I
K
E
I
G
R
G
K
N
H
A
R
D
L
D
R
D
T
A
-
R
G
L
Y
A
H
M
L
N
GEVP
D
L
E
L
--------
G
G
V
L
I
A
---
L
R
---
I
K
GEG
E
---------
A
E
M
L
G
F
Y
--
E
A
M
Q
N
H
T
I
K
L
T
P
P
A
G
K
P
M
P
I
V
I
P
S
-----------------
Y
N
GARK
Q
A
N
L
T
P
----------
L
L
A
I
L
L
H
K
L
G
F
P
----
V
V
V
H
--
G
V
S
E
D
-----
P
T--------
R
V
L
T
---
E
T
I
F
-------
E
L
M
GITPTL
H
G
G
Q
A
Q
A
K
L
D
E
H
Q
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V
F
M
P
V
G
A
F
C
P
P
--
L
E
K
---
Q
L
A
M
R
--------------
W
R
M
------
G
V
R
N
S
A
H
T
L
--------------
A
K
L
A
T
P
F
A
E
G
E
A
L
R
--------
L
S
S
V
S
H
P
E
Y
I
-
G
R
V
A
K
F
--
F
S
D
I
G
G
R
A
L
L
--------
M
HGTEGEVYANPQRC
P
Q
I
N
L
I
D
R
E
G
M
R
V
L
YEKQ
A
K
D
P
E
T
T
A
Q
W
I
E
R
---
C
L
A
G
S
---
E
P
I
P
E
S
L
K
I
Q
M
A
C
C
L
V
A
T
GEAAT
I
S
D
G
L
A
R
V
N
Q
A
F-----------------------------------------------------
17
Fugue
60.93
16%
-66
- C3 -
1JQE
2
HNMT_HUMAN
A:
[13-292]
G
K
Y
V
E
S
F
R
R
F
L
N
H
S
T
E
H
Q
C
M
Q
E
F
M
D
K
K
L
P
G
I
I
G
-------
R
I
G
-
D
T
K
S
E
I
K
I
L
----
S
I
G
G
--------
G
A
G
E
I
D
---
L
Q
---
I
----
L
---------
S
K
V
Q
A
Q
Y
PG
V
C
I
N
N
E
V
V
E
P
S
A
E
Q
I
A
K
Y
K
E
L
V
--------------------
A
----
K
I
S
N
L
E
----------
N
V
K
F
A
W
H
K
--
E
T
----
S
S
E
Y
--
Q
S
R
M
L
-----
E
KK
E
L
Q
K
W
D
F
I
H
M
I
---
Q
M
L
Y
YVKD
I
P
A
T
--------
L
K
F
F
H
S
L
L
G
T
N
A
K
M
L
I
I
----
V
V
S
G
SS
G
W
D
---
K
L
W
K
K
--------------
Y
G
S
RFPQDD
L
C
Q
Y
I
T
S
D
D
--------------
L
T
Q
M
L
D
N
L
-
G
L
K
Y
E
--------
C
Y
D
L
-
L
S
T
M
D
I
S
D
C
F
I
D
--
G
N
E
--
N
G
D
L
L
--------
W
--------------
D
F
L
T
E
T
C
N
----
F
N
----
A
T
A
P
P
D
L
R
A
E
L
G
K
D
L
Q
E
P
E
F
S
---
A
K
K
E
G
K
V
L
F
N
N
T
L
S
F
I
V
I
-----
E
A
---------------------------------------------------------------
11
Fugue
59.24
15%
-107
- C6 -
3MAJ
2
?
A:
[13-381]
-----------------------
G
T
T
V
L
T
E
A
Q
R
-------
I
D
W
M
R
L
I
R
A
E
N
V
G
----
P
R
T
F
--------
R
S
L
I
N
H
FGS
A
R
---
A
----
A
---------
L
E
R
L
P
E
L
--
A
R
R
G
G
A
A
R
A
G
R
I
P
S
E
D
E
A
R
R
E
I
E
A
-----------------
G
R
----
R
I
G
V
E
L
V
A
PGETGYP
T
R
L
A
T
I
D
D
A
--
P
P
----
L
L
G
V
H
A
L
P
E
A
L
AVMA
R
P
M
--------
I
A
I
V
G
S
R
N
A
S
G
-------
A
--------
G
L
K
F
A
G
Q
L
A
A
D
L
G
A
A
G
F
----
V
V
I
S
--
G
L
A
RG
I
D
Q
A
A
H
--------------
R
A
S
------
L
S
S
G
T
V
A
V
L
AGGHDKIYPAEH
E
D
L
L
L
D
I
I
Q
T
-
R
G
A
A
I
S
EMPLGHV
P
R
G
K
-
D
F
P
R
R
-
N
R
L
I
S
G
--
A
S
V
--
G
V
A
V
I
E
A
A
YRS
G
S
L
--------------
I
T
A
R
R
A
A
D
Q
G
R
E
V
F
----
A
-
V
P
G
S
P
L
D
P
R
A
A
---
G
T
N
D
L
---
I
K
Q
-
G
A
T
L
I
T
S
A
S
D
I
V
E
A
-----
V
A
S
I
L
E
G
EPDTG
D
R
T
R
I
L
A
L
LGP
S
P
V
G
I
D
D
L
I
R
L
S
GIS
P
A
V
V
R
T
I
L
L
E
L
E
L
A
GR
L
E
R
H
G
GS
L
V
S
L
16
Fugue
57.29
17%
-169
- C5 -
4Q2E
5
CDSA_THEMA
A:
[29-290]
-----------------------
I
T
A
S
V
V
A
P
F
V
-------
V
L
C
-
F
V
S
Y
E
S
L
I
G
----
L
V
S
A
--------
I
L
I
L
A
G
---
Y
E
---
L
----
I
T
L
E
M
KERD
A
R
F
F
Y
V
I
L
--
L
A
L
Y
P
V
L
Y
G
L
V
F
E
E
P
T
Q
P
L
S
I
L
F
I
-----------------
T
G
----
V
V
F
S
L
I
T
D
KD
P
S
Q
V
--
F
K
T
V
A
A
F
S
--
I
A
----
L
I
Y
V
--
T
F
F
L
S
-----
F
---------
F
L
P
I
---
Y
R
D
F
------------------
G
A
A
N
A
L
L
V
L
T
S
T
W
V
F
----
D
S
F
A
--
Y
F
T
---
G
L
K
F
G
RTRISPRYSPRKS
L
E
G
V
------
I
G
G
F
L
G
V
V
I
--------------
Y
T
F
L
Y
R
L
V
-
V
N
D
L
L
--------
S
V
N
V
-
I
C
F
R
T
-
F
L
P
F
A
--------
A
T
V
A
I
--------
M
--------------
D
T
F
G
D
I
F
E
C
A
L
K
R
H
----
Y
G
V
K
D
S
G
K
T
L
P
G
H
---
G
-----------
G
M
L
D
R
I
D
G
L
L
F
V
A
P
-----
V
S
Y
I
V
F
K
I
L
EGVVR---------------------------------------------------
13
Fugue
49.46
16%
-61
- C2 -
4Q7J
-
RS1_ECOLI
D:
[3-179]
---------------------E
S
F
A
Q
L
F
E
E
S
L
K
-------
E
I
E
-
T
R
P
G
S
I
V
R
G
----
V
V
V
A
--------
I
D
K
------------------------------------
D
V
V
L
V
D
A
G
L
K
S
E
S
A
I
P
A
E
Q
F
K
---------------------------------------------------------------------------------------------
N
-------
A
--------
Q
G
E
L
E
I
Q
V
G
D
E
V
D
V
A
L
D
----
A
V
E
D
--
G
F
G
---
E
T
L
L
S
--------------
R
E
K
------
A
K
R
H
E
A
W
I
T
--------------
L
E
K
A
Y
----
E
D
A
E
T
--------
V
T
G
V
-
I
N
G
K
V
-
K
G
-----------
G
F
T
V
E
--------
L
--------------
N
G
I
R
A
F
L
P
G
S
---
L
----
V
D
V
R
P
V
R
D
T
L
H
L
E
---
G
K
E
L
E
---
F
K
V
I
K
L
D
Q
K
R
N
N
V
V
V
S
R
R
-----
A
V
I
E
S
E
N
S---------------------------------------------------------
15
Fugue
49.36
12%
-16
- C4 -
3HYI
3
?
A:
[7-294]
-----------------RT
F
S
E
E
I
K
E
E
L
V
N
V
P
F
-------
G
S
R
-
E
E
V
I
S
E
L
L
G
----
F
I
K
A
RGDLDVKS
R
H
I
V
F
S
---
L
H
S
F
A
A
----
S
---------
R
R
L
L
N
L
M
--
K
Y
L
S
K
P
V
S
E
I
I
V
E
K
K
K
R
Y
I
K
I
T
A
E
Y
S
ESFMVIEPFFD
V
A
L
F
V
S
----
F
L
R
G
L
F
----------
L
S
G
G
S
M
T
N
--
P
R
YHY
H
L
E
I
N
--
L
F
E
E
E
-----
T
---------
L
A
L
T
---
R
K
S
L
-------
K
--------
D
F
F
N
I
N
A
G
I
I
E
L
R
N
T
R
K
----
L
Y
I
K
--
S
I
K
---
D
I
L
V
F
--------------
L
E
A
------
I
G
V
Q
R
K
L
E
E
--------------
I
D
R
I
V
T
E
R
-
K
V
I
G
D
--------
V
N
R
T
-
V
N
F
I
E
-
A
N
A
I
R
T
--
A
N
S
--
T
A
R
Q
I
--------
R
--------------
A
I
E
L
I
K
E
N
M
G
---
L
----
E
N
L
P
E
D
L
R
R
V
A
L
V
---
R
L
R
N
K
ELS
L
R
E
L
G
K
K
L
N
L
T
K
S
Q
I
Y
S
K
-----
L
K
R
I
I
K
I
A
ERFGDV---------------------------------------------------
20
Fugue
38.14
13%
-91
* C5 *
1P32
-
C1QBP_HUMAN
A:
[74-282]
--------------------------
M
H
T
D
G
D
K
-------
A
F
V
-
D
F
L
S
D
E
I
K
E
----
E
R
K
I
--------
Q
K
H
K
T
L
---
P
K
---
M
----
S
---------
G
G
W
---
E
--
L
E
L
N
G
T
E
A
K
L
V
R
K
V
A
G
---------------------------------
E
K
I
T
----------
V
T
F
N
I
N
N
S
--
I
P
----
L
-------
T
S
T
-----
P
---------
N
F
V
V
---
E
V
I
K
-------
N
--------
D
D
G
K
---------------------------------
K
--------------
A
L
V
------
L
D
C
H
Y
P
E
D
E
--------------
A
E
S
D
I
F
S
I
-
R
E
V
S
F
--------
Q
S
T
G
-
E
S
E
W
K
-
D
T
N
Y
T
L
N
T
D
S
L
--
D
W
A
L
Y
--------
D
--------------
H
L
M
D
F
L
A
D
R
G
----------
V
D
N
T
F
A
D
E
L
V
E
---
L
S
T
A
L
---
E
H
Q
E
Y
I
T
F
L
E
D
L
K
S
F
V
K
S
-----
Q
----------------------------------------------------------------
7
HHSearch
28.99
19%
-404
- C6 -
1WAZ
-
?
A:
[53-68]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
---------
F
I
G
L
---
T
I
Y
A
-------
I
--------
Q
R
K
R
Q
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
28.18
36%
-171
- C6 -
2HTG
1
A:
[13-26]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
L
L
N
D
A
V
T
V
V
L
----
Y
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
28.12
50%
-
- C1 -
5EFI
2
?
C:
[7-14]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
-
I
R
E
K
G
-
N
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
24.47
33%
169
- C6 -
1CM4
-
B:
[4-21]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
N
-------
A
--------
R
R
K
L
K
G
A
I
L
T
T
M
L
A
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
23.99
21%
-82
- C6 -
1Z2T
-
A:
[7-20]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
L
F
--------
V
K
R
Y
-
V
R
K
M
R
-
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
22.95
33%
49
- C6 -
4RGD
1
?
A:
[52-66]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
Y
--------
L
K
K
E
-
I
K
K
K
G
-
K
R
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
19.35
14%
-105
* C6 *
1IQ5
-
?
B:
[8-21]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
T
L
I
L
--------
V
K
A
M
-
G
H
R
K
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
13.31
36%
128
- C6 -
1CKK
-
B:
[8-21]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
V
I
L
--------
V
K
S
M
-
L
R
K
R
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
11.18
4%
-94
- C6 -
3L1L
-
ADIC_ECO57
A:
[407-431]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
----
E
V
M
W
--
S
F
V
T
L
-----
M
---------
V
I
T
A
---
M
Y
A
L
-------
N
--------
Y
N
R
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
7.90
43%
-
- C6 -
2NA7
-
TNR6_HUMAN
A:
[174-194]
--------------------------------------------------------------------------------------------------
L
G
W
L
S
L
L
--
L
L
P
I
P
L
I
V
W
V
K
R
K
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
5.35
18%
0
- C- -
3WU2
-
PSBM_THEVL
M:
[25-33]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
L
Y
--------
V
Q
T
E
-
S
Q
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------