@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu37610: (2016-08-02 )
MANEFRVCDDCQATNIKTLLPRLKEVDPDAKVEVGCQSYCGPGRKKSFAFVNNRPLSAPTEDELIDKVKKKIKK
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........----------.----------10.-.-.-.....20---......----------.---.--30--..-.-.-....---.40.--.--......50.------..--..----..--------.-------60........70...----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MANEFRVC----------D----------DCQ-A-T-
N
I
K
T
L
L
P
---
R
L
K
EVD----------P---D--A---
K
V
-
E
-V-GCQS---YCGP--G--RK
K
S
F
A
F
VN------NR--PL----SA--------P-------
T
E
D
E
L
I
D
K
V
K
K
K
IKK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
65.81
18%
17
- C3 -
2LJK
-
MIEN1_HUMAN
A:
[26-100]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
V
V
E
Y
C
----------
E
----------
P
C
G
-
F
-
E
A
T
Y
L
E
L
A
S
---
A
V
K
E
Q
Y
----------
P
---
G
--
I
---
E
I
-
E
-
S
-
R
-
L
G
---------
G
--
T
G
A
F
E
I
E
I
N
------
G
Q
--
L
V
----
F
S
--------
K
LENGGFP
Y
E
K
D
L
I
E
A
I
R
R
A
S
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
60.84
18%
-8
- C3 -
2P0G
-
?
A:
[5-80]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
E
I
Y
Y
C
----------
R
----------
Q
C
N
-
W
-
M
L
R
S
A
W
L
S
Q
---
E
L
L
H
T
F
----------
S
---
E
--
E
IE-
Y
V
-
A
-
L
H
P
--
D
---------
T
--
G
G
R
F
E
I
F
C
N
------
G
V
--
Q
I
----
W
E
RKQEG
G
F
-
P
-------
E
A
K
V
L
K
Q
R
V
R
D
L
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
59.77
18%
5
- C3 -
2OKA
-
?
A:
[7-83]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
V
I
T
Y
C
----------
T
----------
Q
C
Q
-
W
L
L
-
R
A
A
W
L
A
Q
---
E
L
L
S
T
F
----------
A
---
D
--
D
LG-
K
V
-
C
-
L
-
E
-
P
G
---------
T
--
G
G
V
F
R
I
T
C
D
------
G
V
--
Q
V
----
W
E
RKADGGF-
P
-------
E
A
K
A
L
K
Q
R
V
R
D
R
I
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
58.53
15%
-16
- C3 -
2OJL
-
?
A:
[10-85]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
A
I
Q
Y
C
----------
T
----------
Q
C
Q
-
W
-
L
L
R
A
A
W
M
A
Q
---
E
L
L
S
T
F
----------
G
---
A
DL
G
---
E
V
-
A
-
L
-
V
-
P
G
---
T
--------
G
G
V
F
R
I
H
Y
N
------
G
A
--
P
L
----
W
D
--------
R
EVDGGFP
E
A
K
V
L
K
Q
R
V
R
D
H
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
58.26
22%
85
- C3 -
1FO5
-
THIO_METJA
A:
[11-83]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
M
C
----------
P
----------
H
C
P
-
A
----
A
K
R
V
V
E
---
E
V
A
N
E
M
----------
P
D--
A
--
V
---
E
V
-
E
-
Y
I
N
V
M
E
NPQ
K
A
M
E
YG
I
--
M
A
V
P
T
I
V
I
N
------
G
D
V
E
F
I
----
G
A
--------
P
-------
T
K
E
A
L
V
E
A
I
K
K
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
56.09
10%
23
- C3 -
3DEX
-
?
A:
[14-89]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
Q
I
E
Y
C
----------
T
----------
Q
C
R
W
L
-
P
-
R
A
A
W
L
A
Q
---
E
L
L
T
T
F
----------
E
---
T
--
E
LT-
E
L
-
A
-
L
-
K
-
P
G
---
T
--------
G
G
V
F
V
V
R
V
D
------
D
E
--
V
V
----
W
D
RREQGF--
P
-------
E
P
T
A
V
K
R
L
V
R
D
R
V
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
55.18
14%
-8
- C- -
2FA8
-
?
A:
[7-83]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
A
I
R
Y
C
----------
T
----------
Q
C
N
-
W
-
L
L
R
A
G
W
M
A
Q
---
E
I
L
Q
T
F
----------
A
---
S
D-
I
G--
E
V
-
S
-
L
I
P
--
S
---------
T
--
G
G
L
F
E
I
T
V
D
------
G
T
--
I
I
----
W
E
--------
R
KRDGGFP
G
P
K
E
L
K
Q
R
I
R
D
L
I
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
54.20
14%
-61
- C3 -
2NPB
-
SELW_MOUSE
A:
[1-88]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
L
A
V
R
V
V
----------
Y
----------
S
G
A
-
C
-
G
-
Y
K
P
K
Y
L
Q
---
L
K
E
K
L
E
----------
H
---
E
--
F
---
P
G
-
C
-
L
-
D
I
C
G
---
E
G
T
P
--
Q
--
V
T
G
F
F
E
V
T
V
------
A
G
--
K
L
----
V
H
SKKRGDGY
V
-------
D
T
E
S
K
F
R
K
L
V
T
A
I
K
A
A
L
A
Q
C
Q----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
52.18
16%
80
- C3 -
4F9D
4
PGAB_ECOLI
A:
[6-609]
PWPHN
G
F
V
A
I
S
W
H
N
VEDEADQRFM
S
V
R
T
S
A
L
R
E
Q
F
A
W
L
R
E
N
G
Y
Q
P
V
S
I
A
Q
I
R
E
A
H
R
G
G
K
P
L
P
EK
A
V
V
L
T
F
D
DGY
Q
S
F
Y
T
R
V
F
P
I
L
Q
A
F
Q
W
P
A
V
W
A
P
V
G
S
W
V
D
TPADKQVKFGD
E
L
V
D
REYFAT
W
Q
Q
V
R
E
V
A
R
S
RL
V
E
L
A
S
HTWNSHYGIQANAT
G
S
L
L
PVYVNRAYFTDHARYET
A
A
E
Y
R
E
R
I
R
L
D
A
V
K
M
T
E
Y
L
R
T
KVEVNPH
V
F
V
W
PYGEAN
G
I
A
I
E
E
L
K
K
L
GYD
M
F
F
T
LESGLANASQLD
S
I
P
R
V
L
I
A
NNPS
L
K
E
F
A
Q
Q
I
I
T
V
QEK
S
P
Q
R
I
M
H
I
D
L
D
Y
V
Y
D
E
N
----------
L
----------
Q
Q
M
-
D
-
R
-
N
I
D
V
L
I
Q
---
R
V
K
D
M
Q
----------
I
---
S
--
T
---
V
Y
-
L
-
Q
-
A
F
A
D
---
P
D
G
D
--
G
--
L
V
K
E
V
W
F
P
N
------
R
L
---------
L
--------
P
-------
M
K
A
D
I
F
S
R
V
A
W
Q
L
R
T
R
SG
V
N
I
Y
A
W
M
P
VLSWDLDPTLT
R
V
K
Y
L
PTG
E
K
K
A
Q
I
H
PEQYHRLSPFD
D
R
V
R
A
Q
V
G
M
L
Y
E
D
L
A
G
H
AAFD
G
I
L
F
H
DDALLSDYEDAS
A
P
A
I
T
A
Y
Q
Q
A
GFSGS
L
S
E
I
R
Q
N
P
E
Q
F
K
Q
W
A
R
F
K
S
R
A
L
T
D
F
T
L
E
L
S
A
R
V
K
A
I
RGPH
I
K
T
A
R
N
I
F
A
L
P
V
I
QPESEAWFAQN
Y
A
D
F
L
K
S
Y
D
W
T
A
I
MAMPYLEGVA
E
K
S
A
D
Q
W
L
I
Q
L
T
N
Q
I
K
N
I
PQAKDK
S
I
L
E
L
QA
I
S
S
Q
Q
L
A
H
W
M
S
L
L
Q
L
N
GVK
N
Y
G
Y
Y
P
3
HHSearch
51.13
13%
-12
- C3 -
1M2D
1
FER2_AQUAE
A:
[4-90]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
H
V
F
V
C
----------
V
Q
D
R
P
PGHPQG
S
C
A
-
Q
-
R
-
G
S
R
E
V
F
Q
---
A
F
M
E
K
I
Q
T
D
P
Q
L
F
---
M
---
T
--
T
---
V
I
-
T
-
P
T
G
C
M
N
---
A
S
M
M
-------
G
P
V
V
V
V
Y
PD----
G
V
--
W
Y
----
G
Q
--------
V
-------
K
P
E
D
V
D
E
I
V
E
K
H
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
50.41
26%
45
- C2 -
2BBD
8
?
A:
[1-323]
------------------------------------------------------------------------------------------------------------------G
E
I
Y
T
E
T
L
Q
Q
T
Y
A
W
T
A
G
T
N
I
P
I
K
I
P
RNNFIR
K
I
R
V
Q
L
I
G
S
I
S
N
SGT
A
A
V
T
L
P
SAPFPYNLVQ
T
F
N
L
S
Y
EGSKTL
Y
S
V
S
G
T
G
L
G
I
L
M
Y
Y
T
T
K
GQNPAYPAPG
T
S
V
P
AS
G
S
V
N
L
N
V
M
W
E
F
D
LARFPATMV
Q
N
I
I
L
S
I
L
T
G
Q
A
PSG
V
S
I
N
A
S
F
Y
I
T
I
T
Y
E
RVT
A
Q
E
I
L
S
E
G
G
L
G
----------
A
----------
D
G
E
M
P
----
L
A
T
V
L
P
---
K
V
I
E
I
P
----------
T
F
NV
P
--
A
---
S
S
-
A
-
P
-
I
H
V
A
---
Y
L
Q
P
--
G
QI
Y
K
R
Q
L
V
Y
V
I
------
N
S
--
T
S
GINN
T
D
--------
P
-------
T
E
Y
E
L
K
I
V
R
G
V
P
T
D
K
I
K
V
S
W
A
A
L
Q
A
E
N
Q
A
E
YQVAPYSGA
S
A
I
I
D
F
R
K
Y
F
NGDLDLTHAPSDS
I
E
Y
D
L
A
L
QNQ
D
N
V
Y
S
L
Y
V
S
Y
V
L
PY
Y
D
Q
L
A
AL----------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
50.06
14%
35
- C3 -
2NPB
-
SELW_MOUSE
A:
[3-81]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
V
R
V
V
Y
S
----------
G
----------
A
C
G
-
Y
-
K
P
K
Y
L
Q
L
K
E
---
K
L
E
H
E
F
----------
P
---
G
--
C
---
L
D
I
C
G
E
-
G
T
P
Q
---------
V
--
T
G
F
F
E
V
T
V
A
------
G
K
--
L
V
----
H
S
--------
K
KRGDGYV
D
T
E
S
K
F
R
K
L
V
T
A
I
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
49.41
16%
-65
- C3 -
1SB6
-
?
A:
[1-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
I
Q
L
T
V
P
----------
T
----------
I
A
C
-
E
-
A
-
C
A
E
A
V
T
K
---
A
V
Q
N
E
D
----------
A
---
Q
--
A
---
T
V
-
Q
-
V
-
D
---------------
L
T
S
K
K
V
T
I
T
----------------
S
A
--------
L
-------
G
E
E
Q
L
R
T
A
I
A
S
A
G
H
E
VE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
46.28
7%
-194
- C3 -
3GMF
1
?
A:
[168-197]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
P
S
F
M
I
D
------
G
I
--
L
L
----
A
G
T-------
H
-------
D
W
A
S
L
R
P
Q
I
L
A
R
L
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
44.43
19%
110
- C3 -
1PFJ
-
TF2H1_HUMAN
A:
[1-108]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MATS
S
E
E
V
L
L
IVK
K
V
R
Q
KK
Q
D
G
A
L
Y
L
M
A
E
R
I
A
W
A
----------
P
----------
E
G
K
-
D
-
R
-
F
T
I
S
H
M
Y
AD
I
K
C
Q
K
I
S
----------
P
---
E
--
G
---
K
A
-
K
-
I
-
Q
L
Q
L
---
V
L
H
A
--
G
--
D
T
T
N
F
H
F
S
N
ESTAV
K
E
R
--
D
A
----
V
K
--------
D
-------
L
L
Q
Q
L
L
P
K
F
K
R
K
A
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
44.08
14%
21
- C3 -
2AUV
1
A:
[6-84]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
P
I
S
V
C
----------
M
G
T
--------
A
C
F
-
V
-
K
-
G
A
D
K
V
V
H
---
A
F
K
E
Q
L
KIDIGDVTPD
G
---
R
--
F
---
S
I
-
D
-
T
L
R
C
V
G
---
G
C
A
L
-------
A
P
I
V
M
V
G
------
E
K
--
V
Y
----
G
N
--------
V
-------
T
P
G
Q
V
K
K
I
L
A
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
42.04
20%
-89
- C3 -
4IHU
-
?
A:
[168-197]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
T
P
T
V
R
V
N
------
G
T
--
E
Y
----
E
W
--------
S
-------
T
P
A
A
L
V
A
K
I
K
E
I
V
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
41.08
15%
-149
- C1 -
1BI6
1
H:
[13-25]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
C
P
G
---
F
C
K
T
--
C
--
K
A
E
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
40.79
21%
-110
- C3 -
2N8O
-
?
A:
[1-51]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
---
W
L
N
F
L
K
----------
Y
---
I
--
A
---
K
Y
-
G
-
K
-
K
A
V
S
---
A
A
W
K
--
Y
--
K
G
K
V
L
E
W
L
N
------
V
----------
G
--------
P
-------
T
L
E
W
V
W
Q
K
L
K
K
I
A
G
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
39.20
15%
46
- C3 -
1QQG
-
IRS1_HUMAN
A:
[159-262]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AFK
E
V
W
Q
V
I
LKPKGLGQTKN
L
I
G
I
Y
R
L
C
L
T
SK
T
I
S
F
V
K
L
----------
N
S
E
-
A
-
A
-
A
V
V
L
Q
L
M
---
N
I
R
R
C
G
----------
H
---
S
--
E
N
F
F
F
I
-
E
-
V
-
G
R
S
A
---
V
T
G
P
--
G
----
E
F
W
M
Q
V
D
------
D
S
--
V
V
----
A
Q
--------
N
-------
M
H
E
T
I
L
E
A
M
R
A
M
S
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------