@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu38050: (2016-08-03 )
MDYKETAKRLIELLGGKENIISAAHCATRLRLVMKDESKIDQAQVEELDGVKGAFSSSGQYQIIFGTGLVNKVFDAFSKEADIEREEHVNHQDAAKEKLNPAARFAKTLSNIFVPIIPAIVASGLLMGLLGMINAFHWMSKDSALLQLLDMFSSAAFIFLPILIGVSASKEFGSNPYLGAVIGGIMIHPNLLNPWGLAEATPDYMHLFGFDIALLGYQGTVIPVLLAVYVMSKVEKWTRKVVPHAVDLLVTPFVTVIVTGFVAFIAIGPLGRALGSGITVALTYVYDHAGFVAGLIFGGTYSLIVLTGVHHSFHAIEAGLIADIGKNYLLPIWSMANVAQGGAGLAVFFMAKKAKTKEIALPAAFSAFLGITEPVIFGVNLRYRKPFIAAMIGGALGGAYVVFTHVAANAYGLTGIPMIAIAAPFGFSNLIHYLIGMAIAAVSAFIAAFVMKINEDEERKK
Atome Classification :
(20 SA)
---.........10........20........---------------------30.....----...40........50........60........-70........80........90........100.......110.......120.......130....--...140.........150.......160..----.....170.......180...---....190.......200.......210.......220.......230.......-----240.......-------250.....-..260.......270.......280.-.....-.290.......300.......310..--...----..----320--.....-.--.330...-.....340....----...350.......360.......370.......380----.......390.......400.......410---.-........420.......430.......440.......450.......460-
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---M
D
Y
K
E
T
A
K
R
L
I
E
L
LGGK
E
N
I
I
S
A
A
H
C
A
T
R
---------------------
L
R
L
V
MKD----ESKI
D
Q
A
Q
V
E
E
LDGVKGAFSSSG
Q
Y
Q
I
I
FGT
G
L
-
V
N
K
V
F
D
A
FSKEADI
E
R
E
EHV
N
H
Q
D
A
A
K
EKL
N
P
A
A
R
F
A
K
T
L
S
N
I
F
V
P
I
I
P
A
I
V
A
S
G
L
L
M
G
L
L
G
M
I
N
A
F
--
H
WMS--
K
D
S
A
L
L
Q
L
L
D
M
F
SS
A
A
F
I
F
L
P
I
L
I----GVSA
S
K
EFGSNPY
L
G
A
VIG
G
I
---
M
IHPNLLNPWGLAEATP
D
Y
M
H
L
F
G
F
D
I
A
L
LGYQG
T
V
I
P
V
L
L
A
V
Y
V
M
S
K
V
E
K
W
T
R
-----
K
V
V
P
H
A
V
D
L
L
-------
V
T
P
F
V
T
V
I
-
V
T
G
F
V
A
F
I
A
IG
P
L
G
R
A
LGSG
I
T
V
A
L
T
-
Y
VYDH-
A
G
F
V
A
G
L
I
FGG
T
Y
S
L
I
V
L
TGVH
H
S
F
H
--
A
I
E
----
A
G
----
L
I
A
--
D
IGKN-
Y
--
L
L
-
P
I
W
S
-
M
A
N
V
AQGGA
G
L
A
----
V
F
F
M
AKKAKTKEIA
L
P
A
A
F
S
A
F
LGITE
P
V
I
F
G
V
N
L
R
----YRK
P
F
I
A
A
M
I
GGALG
G
A
Y
V
V
F
T
H
VAANA-----Y-GLTGI
P
M
I
A
I
AAPF
G
F
S
N
L
I
H
Y
L
I
G
M
A
I
A
A
V
S
A
F
I
A
A
F
V
M
KINE
D
E
ERKK--
40
Fugue
77.48
15%
-132
- C1 -
4MT7
-
ARHG9_RAT
A:
[45-381]
---
Q
N
R
D
Q
M
R
A
N
V
I
N
E
I
M
S
T
E
-----
R
H
Y
I
K
H
---------------------
L
K
D
I
C
E
G
-----------
Y
L
K
Q
C
R
K
R
R
D
M
F
S
-
D
E
Q
L
K
V
I
F
G
N
----
I
E
D
I
Y
R
F
Q
M
G
F
V
R
D
L
E
K
Q
Y
N
N
D
D
P
H
L
S
E
I
G
P
C
F
L
E
H
Q
D
G
F
W
I
Y
S
E
Y
C
N
N
H
L
D
A
C
M
E
L
S
K
L
M
K
D
S
R
Y
--
Q
H
F
F
--
E
A
C
R
L
L
Q
Q
M
I
D
I
A
I
D
G
F
L
L
T
P
V
Q
K
----
I
C
K
Y
P
L
Q
L
A
E
L
L
K
Y
T
A
---------------------
Q
D
H
S
D
Y
R
Y
V
A
A
A
L
A
V
M
R
N
V
T
Q
Q
I
N
E
R
K
R
R
L
E
N
I
D
K
I
A
Q
W
Q
A
-----
S
V
L
D
W
E
G
D
D
I
-------
L
D
R
S
S
E
L
I
-
Y
T
G
E
M
A
W
I
Y
-
Q
P
Y
G
R
N
-----
Q
Q
R
V
F
-
F
L
F
D
H
---------------------------------------------------------------------------
Q
----
M
V
L
C
K
K
D
L
I
R
R
D
I
---
L
Y
Y
K
G
R
I
D
M
D
K
Y
E
V
I
D
I
E
D
G
----
R
D
D
D
F
N
V
S
M
----------------
K
N
A
-----
F
-
K
L
H
N
K
E
----------
T
E
E
V
H
L
F
F
A
K
K
L
E
E
K
I
R
W
L
R
A
F
R
E
E
R
K
M
V
Q
E
D
E
K
I
G
1
PsiBlast_PDB
68.52
53%
-184
- C2 -
3IPJ
1
?
A:
[6-81]
-----
Y
N
K
I
A
N
E
L
I
K
I
I
G
-
E
D
N
I
I
S
I
T
H
C
A
T
R
---------------------
L
R
V
M
V
K
D
----
R
E
I
I
N
D
K
K
V
E
K
V
D
E
V
K
G
V
F
F
T
S
G
Q
Y
Q
I
I
L
G
T
G
I
-
V
N
K
V
Y
A
E
V
E
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
67.38
53%
-179
- C2 -
3IPJ
2
?
B:
[6-81]
-----
Y
N
K
I
A
N
E
L
I
K
I
I
G
-
E
D
N
I
I
S
I
T
H
C
A
T
R
---------------------
L
R
V
M
V
K
D
----
R
E
I
I
N
D
K
K
V
E
K
V
D
E
V
K
G
V
F
F
T
S
G
Q
Y
Q
I
I
L
G
T
G
I
-
V
N
K
V
Y
A
E
V
E
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
64.50
48%
-123
- C2 -
3IPJ
1
?
A:
[4-87]
---
N
K
Y
N
K
I
A
N
E
L
I
K
I
I
-
G
E
D
N
I
I
S
I
T
H
C
A
T
R
---------------------
L
R
V
M
V
K
D
----
R
E
I
I
N
D
K
K
V
E
K
V
D
E
V
K
G
V
F
F
T
S
G
Q
Y
Q
I
I
L
G
T
-
G
I
V
N
K
V
Y
A
E
V
E
K
M
G
L
K
T
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
62.63
12%
-109
- C2 -
3QNQ
8
?
A:
[13-426]
-----------------------------------------------------------------------------------------------------------------------------
A
G
K
V
A
E
Q
R
H
L
L
A
I
R
D
G
L
V
L
T
M
P
F
L
I
I
G
S
I
F
L
I
I
S
T
L
P
I
P
G
Y
S
E
F
M
A
S
L
F
G
K
N
W
N
V
A
L
G
Y
P
V
S
A
T
F
N
I
M
A
L
I
A
V
F
G
I
A
Y
R
L
G
E
Y
Y
K
V
D
A
L
A
S
G
A
L
S
L
V
T
F
L
L
A
T
P
F
Q
V
A
Y
I
M
P
G
T
K
E
-
S
I
L
V
D
G
V
I
P
A
A
L
M
-
G
S
Q
G
L
F
V
A
M
I
I
A
I
I
S
T
E
I
Y
R
F
L
V
Q
K
KM
I
I
K
M
P
E
T
V
P
P
A
V
T
R
S
F
A
A
L
I
P
G
F
I
V
V
T
V
V
W
I
I
R
L
I
F
E
H
T
T
F
G
S
I
H
N
V
V
G
K
L
L
Q
E
P
L
S
I
L
G
A
S
L
W
G
A
V
I
A
V
I
L
V
H
V
L
W
A
C
G
I
H
G
A
T
I
V
G
G
V
M
S
P
I
W
L
S
L
M
D
Q
N
R
I
A
F
Q
A
G
Q
D
V
P
NT
I
T
A
Q
F
F
D
L
W
I
Y
M
G
G
S
G
A
T
L
A
L
V
V
G
M
L
L
F
A
R
S
Q
Q
L
K
S
L
G
R
L
S
I
A
P
G
I
F
N
I
N
E
M
V
T
F
G
M
P
I
V
MNP
L
L
L
I
P
F
I
V
V
P
V
V
L
T
I
V
S
Y
F
A
M
E
W
G
L
V
A
R
P
SGAAV
T
W
T
T
P
I
L
F
S
--
G
Y
L
G
S
G
-
G
-
K
I
S
G
V
I
L
Q
L
V
N
F
A
L
A
F
V
I
Y
L
P
F
L
K
I
W
D
K
Q
K
----
33
Fugue
61.79
44%
9
- C2 -
3IPJ
1
?
A:
[1-95]
SNA
N
K
Y
N
K
I
A
N
E
L
I
K
I
I
G
-
E
D
N
I
I
S
I
T
H
C
A
T
R
---------------------
L
R
V
M
V
K
D
----
R
E
I
I
N
D
K
K
V
E
K
V
D
E
V
K
G
V
F
F
T
S
G
Q
Y
Q
I
I
L
G
T
G
I
-
V
N
K
V
Y
A
E
V
E
K
M
G
L
K
T
L
S
K
K
E
Q
D
E
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
59.09
35%
-145
- C2 -
3BP3
1
PTGCB_ECOLI
A:
[2-81]
----
G
T
S
E
M
A
P
A
L
V
A
A
F
G
G
K
E
N
I
T
N
L
D
A
C
I
T
R
---------------------
L
R
V
S
V
A
D
----
V
S
K
V
D
Q
A
G
L
K
K
L
-
G
A
A
G
V
V
V
A
G
S
G
V
Q
A
I
F
G
T
-
K
-
S
D
N
L
K
T
E
M
D
E
Y
I
R
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
54.90
44%
-142
- C2 -
3BP3
1
PTGCB_ECOLI
A:
[5-66]
-------
E
M
A
P
A
L
V
A
A
F
G
G
K
E
N
I
T
N
L
D
A
C
I
T
R
---------------------
L
R
V
S
V
A
D
----
V
S
K
V
D
Q
A
G
L
K
K
L
-
G
A
A
G
V
V
V
A
G
S
G
V
Q
A
I
F
G
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
54.51
44%
-153
- C2 -
1O2F
-
B:
[314-375]
-------
E
M
A
A
A
L
V
A
A
F
G
G
K
E
N
I
T
N
L
D
A
C
I
T
R
---------------------
L
R
V
S
V
A
D
----
V
S
K
V
D
Q
A
G
L
K
K
L
-
G
A
A
G
V
V
V
A
G
S
G
V
Q
A
I
F
G
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
54.12
44%
-143
- C2 -
3BP3
1
B:
[7-66]
---------
A
P
A
L
V
A
A
F
G
G
K
E
N
I
T
N
L
D
A
C
I
T
R
---------------------
L
R
V
S
V
A
D
----
V
S
K
V
D
Q
A
G
L
K
K
L
-
G
A
A
G
V
V
V
A
G
S
G
V
Q
A
I
F
G
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
53.66
44%
-157
- C2 -
3BP8
-
PTGCB_ECOLI
C:
[2-61]
---------
A
P
A
L
V
A
A
F
G
G
K
E
N
I
T
N
L
D
A
C
I
T
R
---------------------
L
R
V
S
V
A
D
----
V
S
K
V
D
Q
A
G
L
K
K
L
-
G
A
A
G
V
V
V
A
G
S
G
V
Q
A
I
F
G
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
51.32
34%
-117
- C2 -
1IBA
-
A:
[15-92]
--------
M
A
P
A
L
V
A
A
F
G
G
K
E
N
I
T
N
L
D
A
C
I
T
R
---------------------
L
R
V
S
V
A
D
----
V
S
K
V
D
Q
A
G
L
K
K
L
-
G
A
A
G
V
V
V
A
G
S
G
V
Q
A
I
F
G
T
-
K
-
S
D
N
L
K
T
E
M
D
E
Y
I
R
N
F
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
50.46
44%
-139
- C2 -
1IBA
-
A:
[15-75]
--------
M
A
P
A
L
V
A
A
F
G
G
K
E
N
I
T
N
L
D
A
C
I
T
R
---------------------
L
R
V
S
V
A
D
----
V
S
K
V
D
Q
A
G
L
K
K
L
-
G
A
A
G
V
V
V
A
G
S
G
V
Q
A
I
F
G
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
40.94
42%
-259
- C3 -
1OFD
-
GLTS_SYNY3
A:
[1405-1436]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
G
G
V
-
I
V
V
L
G
P
V
G
R
N
V
G
A
G
M
T
G
G
L
A
-
Y
F
L
D
E
-
V
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
40.21
42%
-270
- C3 -
1OFE
-
GLTS_SYNY3
A:
[1405-1436]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
G
G
V
-
I
V
V
L
G
P
V
G
R
N
V
G
A
G
M
T
G
G
L
A
-
Y
F
L
D
E
-
V
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
39.56
14%
-106
- C- -
3FX7
-
?
A:
[5-88]
--------------------------
Q
M
D
T
E
E
---------------------
V
R
E
F
V
G
H
----
L
E
R
F
K
E
L
L
R
E
E
V
N
S
L
S
N
H
F
H
N
L
E
S
W
R
---------
D
A
R
R
D
K
F
S
E
V
L
D
N
L
K
S
T
F
N
E
F
D
E
A
A
Q
E
Q
I
A
W
L
K
E
R
I
R
V
L
E
E
D
Y
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
38.49
42%
-265
- C3 -
1LM1
-
GLTS_SYNY3
A:
[1405-1436]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
G
G
V
-
I
V
V
L
G
P
V
G
R
N
V
G
A
G
M
T
G
G
L
A
-
Y
F
L
D
E
-
V
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
37.81
42%
-254
- C3 -
1LLW
-
GLTS_SYNY3
A:
[1405-1436]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
G
G
V
-
I
V
V
L
G
P
V
G
R
N
V
G
A
G
M
T
G
G
L
A
-
Y
F
L
D
E
-
V
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
37.41
42%
-265
- C3 -
1LLZ
-
GLTS_SYNY3
A:
[1405-1436]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
G
G
V
-
I
V
V
L
G
P
V
G
R
N
V
G
A
G
M
T
G
G
L
A
-
Y
F
L
D
E
-
V
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
34.84
18%
-44
- C2 -
5DLE
2
?
A:
[11-74]
-------------------
A
E
K
I
V
A
V
T
A
C
P
V
G
V
A
H
T
Y
I
A
A
K
K
I
E
N
E
A
K
K
Q
G
Y
S
I
R
V
E
T
Q
G
SIGI
E
N
A
L
T
E
E
E
I
K
N
A
S
V
V
I
L
A
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------