@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu38229: (2016-08-03 )
MKTHVKKDLDKGWHMLIQEARSIGLGIHDVRQFLESETASRKKNHKKTVRQD
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------.........10.-----------------.......20........30......-..40........50.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------MK
T
H
V
K
K
D
L
D
K
G
-----------------
W
H
M
L
I
Q
E
A
R
S
IGL
G
I
H
D
V
R
Q
F
L
E
S
E
-
T
A
S
RKK
N
H
K
K
TVRQD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
59.76
27%
-200
- C3 -
1QB2
-
SRP54_HUMAN
A:
[403-428]
-----------------------------------------------------------------------------------------------------------------------------------------------
I
Q
R
V
A
R
G
S
G
V
S
T
R
D
V
Q
E
L
L
T
Q
Y
-
T
K
F
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
59.27
26%
-227
- C3 -
1MFQ
1
C:
[91-117]
-----------------------------------------------------------------------------------------------------------------------------------------------
I
Q
R
V
A
R
G
S
G
V
S
T
R
D
V
Q
E
L
L
T
Q
Y
-
T
K
F
A
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
58.38
23%
-361
- C3 -
3GP4
1
?
A:
[44-73]
-----------------------------------------------------------------------------------------------------------------------
E
D
L
R
-----------------
W
I
L
F
T
R
Q
M
R
R
A
G
L
S
I
E
A
L
I
D
Y
L
A
L
F
-
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
58.22
19%
-148
- C3 -
1HQ1
-
A:
[72-98]
-----------------------------------------------------------------------------------------------------------------------------------------------
K
R
R
I
A
A
G
S
G
M
Q
V
Q
D
V
N
R
L
L
K
Q
F
-
D
D
M
Q
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
55.86
19%
-154
- C3 -
1DUL
1
A:
[38-64]
-----------------------------------------------------------------------------------------------------------------------------------------------
K
R
R
I
A
A
G
S
G
M
Q
V
Q
D
V
N
R
L
L
K
Q
F
-
D
D
M
Q
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
55.46
26%
-20
* C3 *
1PGY
-
A:
[1-47]
---------------------------------------------------------------------------------------------------------------------
A
L
V
D
E
V
-----------------
K
D
M
E
I
A
R
L
M
S
L
G
L
S
I
E
E
A
T
E
F
Y
E
N
D
V
T
Y
E
R
Y
L
E
I
L
K
S
K
Q
K
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
55.37
13%
-18
- C3 -
3PYA
3
KSA_ARATH
A:
[8-720]
SN
A
F
K
E
A
V
K
S
V
K
T
I
L
R
N
LTDGE
I
T
I
S
A
Y
D
T
A
W
V
A
L
IDAGDKTPAF
P
S
A
V
K
W
I
A
E
N
QLSDGSWGDAYLFS
Y
H
D
R
L
I
N
T
L
A
C
V
V
A
L
R
S
W
NLF
P
H
Q
C
N
K
G
I
T
F
F
R
E
N
I
GKLEDE
N
D
E
H
M
P
I
G
F
E
V
A
-----------------
F
P
S
L
L
E
I
A
R
G
I
N
I
D
V
P
Y
D
S
P
V
L
K
D
I
-
Y
A
K
K
E
L
K
L
T
R
I
P
K
E
I
M
H
K
IPTTLLHSLEGMRDLD
W
E
K
L
L
K
L
QSQDGSFLFS
P
S
S
T
A
F
A
F
M
Q
TRD
S
N
C
L
E
Y
L
R
N
A
V
K
R
F
NGGVPNVFPV
D
L
F
E
H
I
W
I
V
D
R
L
Q
R
L
GISRYF
E
E
E
I
K
E
C
L
D
Y
V
H
R
Y
WTDN
G
I
C
WARCSHVQD
I
D
D
T
A
M
A
F
R
L
L
R
Q
H
GYQVSADVFKNFEKEGEFFCFVGQSNQA
V
T
G
M
F
N
L
Y
R
A
S
Q
L
AFPRE
E
I
L
K
N
A
K
E
F
S
Y
N
Y
L
L
E
K
R
E
R
EELIDKWIIMKD
L
P
G
E
I
G
F
A
L
E
I
PWYASL
P
R
V
E
T
R
F
Y
I
D
Q
YGGEN
D
V
W
I
G
K
T
L
Y
R
M
PYVNN
N
G
Y
L
E
L
A
K
Q
D
Y
N
N
C
Q
A
Q
H
Q
L
E
W
D
I
F
Q
K
W
Y
E
E
N
RLSEWGVR
R
S
E
L
L
E
C
Y
Y
L
A
A
A
T
IFESER
S
H
E
R
M
V
W
A
K
S
S
V
L
V
K
A
I
S
S
S
FGES
S
D
S
R
R
S
F
S
D
Q
F
H
E
Y
IP
G
S
V
Q
A
S
R
L
A
G
V
L
I
G
T
L
N
Q
M
S
F
D
L
F
M
S
HGRDV
N
N
L
L
Y
L
S
W
G
D
W
M
E
K
W
K
L
YGDEG
E
G
E
L
M
V
K
M
I
I
L
M
KNNDLTNFFTH
T
H
F
V
R
L
A
E
I
I
N
R
I
CLPRQN
D
E
K
E
K
T
I
K
S
M
E
K
E
M
G
K
M
V
E
L
A
L
S
ESDTF
R
D
V
S
I
T
F
L
D
V
A
K
A
F
Y
Y
F
A
L
CGDHL
Q
T
H
I
S
K
V
LFQKVG
10
HHSearch
55.29
13%
-287
- C3 -
3HH0
-
?
A:
[45-74]
------------------------------------------------------------------------------------------------------------------------
D
L
Y
-----------------
V
L
Q
Q
I
Q
S
F
K
H
L
G
F
S
L
G
E
I
Q
N
I
I
L
Q
R
-
D
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
55.23
24%
-266
- C3 -
1Q08
-
ZNTR_ECOLI
A:
[2-30]
------------------------------------------------------------------------------------------------------------------------
D
L
Q
-----------------
R
L
K
F
I
R
H
A
R
Q
L
G
F
S
L
E
S
I
R
E
L
L
S
I
R
-
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
53.61
17%
-267
- C3 -
1R8D
-
MTA_BACSU
A:
[44-73]
-----------------------------------------------------------------------------------------------------------------------
A
D
L
E
-----------------
R
L
Q
Q
I
L
F
F
K
E
I
G
F
R
L
D
E
I
K
E
M
L
D
H
P
-
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
50.55
16%
-95
- C3 -
2ADN
-
CCDA_ECOLI
A:
[1-72]
---------------------------------------------------------------------------------------------------------------
M
K
Q
R
I
T
V
T
V
D
S
D
--------------------
S
Y
Q
L
L
K
A
Y
D
V
N
I
S
G
L
V
S
T
T
M
Q
N
-
E
A
R
R
L
R
A
E
R
W
K
V
E
N
Q
E
GMVEVA
R
F
I
E
M
NGSFADENKDW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
49.63
25%
-173
- C3 -
1B0N
3
SINI_BACSU
B:
[9-39]
---------------------------------------------------------------------------------------------------------------------
F
E
L
D
Q
E
-----------------
W
V
E
L
M
V
E
A
K
E
A
N
I
S
P
E
E
I
R
K
Y
L
L
L
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
47.98
21%
66
- C2 -
1TVS
-
?
?:
[1-75]
----------------------------------------------------------------------------------------------------------LEDRR
I
P
G
T
A
E
E
N
L
Q
K
S
SGGVPGQNTGGQEARPN
Y
H
C
Q
L
C
F
L
R
S
L
G
I
------
D
Y
L
D
A
S
-
L
R
K
K
N
K
Q
R
L
K
A
I
Q
Q
G
RQPQYLL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
47.45
14%
-148
- C3 -
1Q06
-
CUER_ECOLI
A:
[42-75]
-----------------------------------------------------------------------------------------------------------------------
Q
H
L
N
-----------------
E
L
T
L
L
R
Q
A
R
Q
V
G
F
N
L
E
E
S
G
E
L
V
N
L
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
47.11
21%
-173
- C3 -
1B0N
3
SINI_BACSU
B:
[9-39]
---------------------------------------------------------------------------------------------------------------------
F
E
L
D
Q
E
-----------------
W
V
E
L
M
V
E
A
K
E
A
N
I
S
P
E
E
I
R
K
Y
L
L
L
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
46.28
10%
-263
- C3 -
4UA1
-
?
A:
[44-73]
-----------------------------------------------------------------------------------------------------------------------
Q
T
V
D
-----------------
R
L
H
F
I
K
R
M
Q
E
L
G
F
T
L
N
E
I
D
K
L
L
G
V
V
-
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
44.30
15%
97
- C3 -
1EXJ
2
BMRR_BACSU
A:
[3-120]
--------------------------------------------------------------------------E
S
Y
Y
S
I
G
E
V
S
K
L
A
NVS
I
K
A
L
R
Y
Y
D
K
I
DLFKPAYVDPD
T
S
Y
R
Y
Y
T
D
S
Q
L
I
-----------------
H
L
D
L
I
K
S
L
K
Y
I
G
T
P
L
E
E
M
K
K
A
Q
D
L
E
-
M
E
E
L
F
A
F
Y
T
E
Q
E
R
Q
I
R
E
K
L
D
F
L
S
A
L
E
Q
T
I
S
L
V
K
K
R
M
K
R
Q
M
E
YPA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
42.74
15%
-161
- C3 -
4UE4
-
SRP54_BACSU
C:
[399-424]
-----------------------------------------------------------------------------------------------------------------------------------------------
R
K
R
I
A
K
G
S
G
T
S
V
Q
E
V
N
R
L
L
K
Q
F
-
D
E
M
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
40.98
15%
-115
- C3 -
2JQE
-
SRP54_ARCFU
A:
[387-413]
-----------------------------------------------------------------------------------------------------------------------------------------------
I
R
R
I
A
I
G
S
G
T
S
P
Q
E
V
K
E
L
L
N
Y
Y
-
K
T
M
K
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
40.02
11%
67
- C3 -
2KZ9
-
VATE_YEAST
A:
[1-69]
-------------------------------------------------------------------------------------------------------MASAITAL
T
P
N
Q
V
N
D
E
L
N
K
M
-----------------
Q
A
F
I
R
K
E
A
E
E
K
A
K
E
I
Q
L
K
A
D
Q
E
Y
E
I
-
E
K
T
N
I
V
R
N
E
T
N
N
I
D
G
N
F
K
S
K
L
K
K
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------