@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu38499: (2016-08-04 )
MLQLMKQLYEKPAVKWTCHTGFYLMILLVLFFMYGFHTANTGSYIYNDF
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10--.......---.20--.....----------...30...--.....40.-.......-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
Q
L
M
K
Q
L
Y
EK--PA
V
K
W
T
C---H
T
G
--
F
Y
L
M
I
----------
L
L
V
L
F
F
M
Y--GFHTANTG-
S
Y
IYNDF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
49.96
17%
-394
- C4 -
1ZRT
-
CY1_RHOCA
D:
[228-245]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
---
V
A
M
--
V
M
L
G
L
----------
L
S
V
M
L
Y
L
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
49.21
8%
-42
- C4 -
2HXT
2
FUCD_XANCP
A:
[2-435]
----------------------------------------------------------------------------------------------------------------------RTII
A
L
E
T
H
DVRFPTSRELDGSDAMNPDPDYSAA
Y
V
V
LRTDGAEDL
A
G
Y
G
L
V
F
T
IGRG
N
D
V
Q
T
A
A
V
A
A
L
AEHVVGLS
V
D
K
V
I
A
D
L
G
A
F
A
R
R
L
T
N
D
--
S
Q
L
R
W
L
G
---
P
E
K
G
V
M
H
M
A
I
----------
G
A
V
I
N
A
A
W
--
D
L
A
A
R
A
A
N
-
K
P
L
W
R
F
I
A
E
LT
P
E
Q
L
V
D
T
IDFRYLSDALT
R
D
E
A
L
A
I
L
R
D
A
QPQ
R
A
A
R
T
A
T
L
I
E
Q
G
Y
P
A
Y
T
TSPGWLGYS
D
E
K
L
V
R
L
A
K
E
A
V
A
D
GFR
T
I
K
L
K
V
G
AN
V
Q
D
D
I
R
R
C
R
L
A
R
A
A
I
GPD
I
A
M
A
V
D
ANQRWD
V
G
P
A
I
D
W
M
R
Q
L
AEFDIA
W
I
E
EPTSPDD
V
L
G
H
A
A
I
R
Q
G
ITPV
P
V
S
T
G
EHTQN
R
V
V
F
K
Q
L
L
Q
A
GAVD
L
I
Q
I
D
AARVGG
V
N
E
N
L
A
I
L
L
L
A
A
K
F
G
V
R
V
F
P
H
AGGVGLCEL
V
Q
H
L
A
M
A
D
F
V
AITGKMED
R
A
I
E
F
V
DHLHQHFLD
P
V
R
I
Q
HG
R
Y
L
A
PEVPGFSAEMH
P
A
S
I
A
E
F
SYPDG
R
F
W
V
E
D
L
A------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
49.10
30%
-133
- C2 -
4C1O
28
?
A:
[25-726]
PKNMF
F
N
A
H
HSPVGAFASFTLGFPGKSGGLDLELGRPPR
Q
N
V
Y
I
G
V
A
SLSQPG
M
Y
E
V
L
PFFEAG
D
D
E
S
K
RYDIENPDPNPEKPQILVPFPNEM
I
Q
R
E
F
H
VS
T
D
T
W
K
A
GD
L
T
F
T
I
Y
S
P
V
K
S
V
P
NPDTAK
E
E
D
L
K
F
A
L
VP
A
V
I
A
E
L
T
I
D
NTKGT
S
P
R
R
A
F
F
G
F
E
G
NDPY
T
S
M
R
R
IDDTCPP
L
R
G
V
G
Q
GRI
T
A
I
V
S
KHSD
V
R
S
A
L
H
F
S
L
E
D
I
L
T
T
P
--
L
E
E
N
W
T
F
GLG
K
V
G
--
A
L
I
M
D
T
P
A
G
M
K
R
T
Y
Q
F
A
V
C
F
Y
R
S
--
G
Y
A
T
A
G
L
D
T
S
Y
F
Y
T
R
F
F
KN
I
E
E
V
G
K
Y
A
L
D
H
I
E
A
L
K
E
R
A
F
Q
S
N
Q
L
I
ERDWLS
D
D
Q
K
F
M
M
A
H
A
I
R
S
Y
Y
G
N
T
Q
L
L
E
Q
EG
K
P
I
W
V
V
N
EGEYRMMNT
F
D
L
T
V
D
Q
L
F
F
E
L
K
M
NP
W
T
V
K
N
V
L
D
L
Y
V
E
RY
S
Y
Y
D
R
V
R
F
P
GEEKE
Y
P
G
G
I
S
F
T
HDMGVANTFSRPHYSAYELYGIDGCFSHM
T
H
E
Q
L
V
N
W
V
L
C
A
A
V
Y
I
E
Q
T
KD
W
A
W
R
Q
E
K
L
P
I
L
E
Q
C
L
E
S
M
V
N
R
D
HPDPEKRNGVMG
L
D
S
TRTMG
G
A
E
I
T
TYDSLDVSLGQARNN
L
Y
L
A
G
K
C
W
A
A
Y
V
A
L
E
K
I
F
R
D
T
GK
E
A
L
A
A
L
A
G
E
Q
A
E
K
C
A
A
T
I
V
S
Y
VTEQGYIPAVMGEG
N
D
S
K
I
IPAIEG
L
V
F
P
Y
F
T
NCHEALDPHGRF
G
E
Y
I
R
A
L
R
K
H
L
Q
Y
V
LTEGICLFPDGGWKISSTSNNSW
L
S
K
I
Y
L
C
Q
F
I
A
R
RILG
W
K
W
D
E
A
G
A
K
A
D
A
A
H
V
A
W
L
T
HPTLSVWSWSDQIIAGEISGSKYYPRGVTS
I
L
W
L
E
E
G
2
PsiBlast_PDB
46.04
40%
-261
- C4 -
3A3Y
-
?
A:
[915-934]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
--
K
I
V
E
F
T
C
---
H
T
S
--
F
F
I
S
I
----------
V
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
43.00
20%
-136
- C4 -
3FBL
1
Y132_AFV1Y
A:
[1-82]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y
H
K
L
R
L
A
I
K
E
I
C
K
T
D
GI
P
N
I
K
W
G
M
---
Y
I
A
--
F
G
E
K
L
----------
L
K
S
Y
L
K
M
K
A
G
S
A
S
S
D
M
I
A
-
E
Y
I
N
N
A
I
S
A
F
S
S
RTGIS
Q
E
T
A
Q
K
I
A
D
F
I
T
S
N
Y----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
42.19
22%
-249
* C4 *
2QJY
-
CY1_RHOSH
B:
[230-247]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
F
---
T
A
V
--
M
F
L
T
V
----------
L
S
V
L
L
Y
L
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
38.99
18%
-336
- C4 -
3DIN
-
SECE_THEMA
D:
[17-50]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
S
W
P
S
R
K
--
E
L
L
T
S
F
G
---
V
V
L
--
V
I
L
A
V
----------
T
S
V
Y
F
F
V
L
--
D
F
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
38.45
40%
-68
- C4 -
5AW7
-
?
A:
[915-934]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
--
K
I
V
E
F
T
C
---
H
T
S
--
F
F
I
S
I
----------
V
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
38.45
40%
-68
- C4 -
5AW6
-
?
A:
[915-934]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
--
K
I
V
E
F
T
C
---
H
T
S
--
F
F
I
S
I
----------
V
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
38.45
40%
-68
- C4 -
5AW4
-
?
A:
[915-934]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
--
K
I
V
E
F
T
C
---
H
T
S
--
F
F
I
S
I
----------
V
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
38.45
40%
-68
- C4 -
5AW0
-
?
A:
[915-934]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
--
K
I
V
E
F
T
C
---
H
T
S
--
F
F
I
S
I
----------
V
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
38.45
40%
-68
- C4 -
5AVZ
-
?
A:
[915-934]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
--
K
I
V
E
F
T
C
---
H
T
S
--
F
F
I
S
I
----------
V
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
38.45
40%
-68
- C4 -
5AVW
-
?
A:
[915-934]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
--
K
I
V
E
F
T
C
---
H
T
S
--
F
F
I
S
I
----------
V
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
38.45
40%
-68
- C4 -
5AVU
-
?
A:
[915-934]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
--
K
I
V
E
F
T
C
---
H
T
S
--
F
F
I
S
I
----------
V
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
38.45
40%
-68
- C4 -
5AVT
-
?
A:
[915-934]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
--
K
I
V
E
F
T
C
---
H
T
S
--
F
F
I
S
I
----------
V
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
38.45
40%
-68
- C4 -
5AVS
-
?
A:
[915-934]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
--
K
I
V
E
F
T
C
---
H
T
S
--
F
F
I
S
I
----------
V
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
38.45
40%
-68
- C4 -
5AVR
-
?
A:
[915-934]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
--
K
I
V
E
F
T
C
---
H
T
S
--
F
F
I
S
I
----------
V
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
38.45
40%
-68
- C4 -
5AVQ
-
?
A:
[915-934]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
--
K
I
V
E
F
T
C
---
H
T
S
--
F
F
I
S
I
----------
V
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
38.45
40%
-68
- C4 -
2ZXE
-
?
A:
[915-934]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
--
K
I
V
E
F
T
C
---
H
T
S
--
F
F
I
S
I
----------
V
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
37.97
40%
-68
- C4 -
5AW5
-
?
A:
[915-934]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
--
K
I
V
E
F
T
C
---
H
T
S
--
F
F
I
S
I
----------
V
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------