@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu38820: (2016-08-04 )
MKSLLAIYPGSIVSEELCIREGCLCFFDESNQRYISIPKTEISEKEVLVLQSFLTPADEGNQLSMKSPEENKWFSFLFSRGELPAYIKKRTRFVHFHLFGKIERTSFTEAVRHFWPVSFVIVWIHEDRGVIVEQESEAAAEKDELESLAKVLESDFYFSVRFYAGRFYEPDECLRKHYAREQAYFLFAEKRLPQVQSVTFEMIFPFLLLETEKEKLETLLSEEAELLFGSESELRKTIKLFIENNSNVTLTAKKLHLHRNSLQYRIDKFIERSGIDIKSYKGALLAYFICLQNESSE
Atome Classification :
(20 SA)
------........---.10.------------.......20-----.........30........40-........50......---------..60..---.-.....70..-----..---...----.80.....-...90.......--------------.100.-------------..---------....110--........120......-------.130---.....-----------------------------..140---.........150...-----....160-------.......170-..---......180.-------------------------------.--.....190....-..----.200..-------------.-----...-.210.......220.---......--230.......------------240...----...------.250.......260------------------------.......270---......-.280.......290.--....-------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------MK
S
L
L
A
IY---PG
S
I
------------
V
S
E
E
L
C
I
R------EG
C
L
C
F
F
DESN
Q
R
Y
I
SIPKTE-ISE
K
E
V
L
V
L
Q
S
FLTPA---------DEGNQL---S-MKSPEE
N
K
W
-----
F
S
---
F
L
F
----SRGE
L
P
A
Y
-
I
K
KR
T
R
F
V
H
F
H
L
--------------
F
G
K
IE-------------R
T
---------
S
F
T
E
A
V
---
R
H
FWP
V
S
F
V
I
V
W
I
HEDR-------
G
V
I
V
---EQ
E
S
E
-----------------------------AAA-----
E
K
D
E
L
E
S
L
A
K
V
L
ESD-----
F
Y
F
S
V
R
F
-------YAGRFY
E
P
D
--
E
C
---
L
R
K
H
Y
A
R
E
Q
A
-------------------------------
Y
--
F
L
F
A
E
K
RL
P
Q
V
Q
-
S
V
----
T
F
E
M
I
F
-------------
P
-----
F
L
L
-LET
E
K
E
K
L
E
T
L
L
S
E
E
---
A
E
L
LFG--
S
E
S
E
L
R
K
T
I
K
------------
L
F
I
ENN----S
N
V
------
T
L
T
A
K
K
L
H
L
H
R
N
S
L
------------------------
Q
Y
R
I
D
K
F
I
E
R
---SGID
I
K
-
S
Y
K
G
A
L
L
A
Y
F
I
C
LQN--ESSE-------------------------
47
Fugue
56.84
22%
40
- C2 -
4R5O
10
?
A:
[2-427]
DDCEDL
H
L
G
N
L
A
H
Y
---
P
N
V
L
K
GTFPT
E
S
Q
V
L
E
L
G
E
T
L
E
I
T
P
E
L
LNP
E
G
A
T
Y
S
W
L
V
N
G
K
E
Y
S
T
E
P
T
F
S
-
Y
K
I
D
N
P
C
R
A
D
L
S
C
I
I
K
---------
N
K
Y
G
K
V
---
E
M
S
T
S
F
S
S
N
H
N
-----
F
S
K
G
F
F
Y
V
----
A
D
G
T
F
N
F
Y
D
T
E
K
K
T
A
Y
Q
D
C
Y
A
S
L
N
AGKTLGIGNY
D
S
A
N
I
I
-------------
H
S
NG
K
F
Y
L
L
V
G
T
S
T
S
N
R
---
D
H
F
Y
I
V
D
A
K
T
L
Y
Y
E
N
S
A
V
V
G
ANLS
G
L
T
I
---
L
N
E
Q
Y
-----------------------------
G
L
V
T
GD
G
I
R
R
I
D
L
K
S
L
N
N
V
R
I
K
N
E
R
LLC
F
Y
N
S
I
I
Y
NG
K
V
---
L
S
N
D
T
Y
K
D
E
--
S
K
---
V
K
Y
Y
D
V
N
E
L
I
A
AKEGEA
P
A
V
T
E
L
DIIQK
Q
K
I
N
F
V
L
A
KDG
N
V
Y
--
T
L
E
S
A
D
N
G
C
N
I
V
-
K
I
K
NDF
T
L
E
K
V
F
A
NFQPAKGPYHSS
P
-----
T
I
G
M
V
A
S
E
T
E
N
I
I
Y
L
V
S
T
D
G
A
I
Y
K
Y
I
L
G
--
D
S
D
S
L
K
A
P
---------------
F
I
A
A
E
----
S
G
V
------
S
I
T
A
P
-
L
Q
L
N
Q
Q
S
G
------------------------
E
L
Y
V
T
Y
T
E
E
R
KD
E
S
K
I
V
V
Y
-
S
K
D
G
K
V
L
H
T
V
D
C
G
E
S
--
V
P
S
Q
I
L
F
NN--------------------
26
HHSearch
55.78
10%
-187
- C4 -
2ESN
-
?
A:
[10-60]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
L
L
L
V
F
D
------------
A
L
Y
R
-
H
----
R
N
V
------
G
T
A
A
S
E
L
A
I
S
A
S
A
F
------------------------
S
H
A
L
G
R
L
R
Q
G
---
L
D
D
E
L
F
-
L
R
Q
-------------------------------------------
50
Fugue
54.97
19%
-3
- C3 -
4C1N
2
?
A:
[1-442]
------
G
L
T
G
L
E
I
Y
K
H
L
P
K
K
N
------------
C
K
E
--
C
G
Q
------
P
T
C
L
A
F
A
M
Q
I
A
A
G
K
A
G
L
D
A
C
P
Y
V
S
D
E
A
K
E
L
L
E
S
A
S
A
P
P
V
A
L
I
K
V
G
KG
E
K
V
L
E
I
G
HE
T
-
V
L
F
R
H
D
K
R
F
EH
P
C
G
L
A
---
I
L
V
E
DTL
S
E
G
E
I
K
E
R
-
V
E
K
I
N
K
L
V
F
D
R
V
---------------
G
Q
M
H
SVN
L
V
A
L
K
GSSQD
A
A
---------
T
F
A
K
A
V
A
T
A
R
E
V
T
D
L
P
F
I
L
I
G
T
P
E
Q
L
-------
A
A
A
L
---
E
T
E
G
A
NNPLLYAATADN
Y
E
Q
M
V
E
L
A
K
K
YN
V
P
L
T
V
S
A
K
-----
G
L
D
A
L
A
E
L
V
Q
K
I
T
A
L
-----
G
Y
K
N
L
I
L
D
PQPEN
I
S
E
G
L
F
Y
Q
T
Q
I
R
R
L
---
A
I
K
K
L
F
R
P
F
G
-------------------------------
Y
P
T
I
A
F
A
L
D
E
N
P
Y
Q
A
-
V
M
----
E
A
S
V
Y
I
-------------
A
K
YAG
I
I
V
L
-
N
T
V
E
P
A
D
I
L
P
L
I
T
L
R
---
L
N
I
Y
T
D
--
P
Q
K
P
I
A
V
E
P
K
V
Y
E
I
LNPGPD
A
P
V
F
I
T
T
N
----
F
S
L
------
T
Y
F
C
V
A
G
D
V
E
G
A
R
I
P
A
Y
I
L
PVDTDGTS
V
L
T
A
W
A
A
GKFT
P
E
K
I
A
Q
F
L
K
E
---
S
G
I
A
E
K
V
N
H
R
K
A
I
L
P
G
G
V
A
V
L
S
--
G
K
L
Q
E
L
SG
W
E
I
L
V
G
P
RESSG
I
N
S
F
I
K
Q
RW
13
HHSearch
54.89
15%
-21
- C4 -
3ONQ
9
?
A:
[91-260]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
T
F
-------
L
L
A
L
---
A
C
Q
M
G
-----------------------------
A
V
---------
T
P
E
V
T
C
T
A
V
M
P
A
-----
F
S
E
D
E
P
L
-------
Y
L
S
P
V
R
S
G
V
--
A
G
---
A
S
H
A
L
R
E
T
M
F
-------------------------------
S
--
L
Q
A
A
P
A
L
S
T
P
S
R
-
P
L
----
R
A
D
E
L
L
-------------
P
-----
E
R
A
-
L
L
G
D
D
Y
A
R
E
E
L
Y
R
N
V
---
Y
Q
V
L
R
G
EN
P
D
D
P
T
Y
L
T
V
S
------------
T
F
L
K
Y
G
----
S
S
L
------
E
N
T
A
K
E
L
N
V
H
P
N
T
V
------------------------
R
Y
R
L
K
R
A
A
E
T
---
T
G
W
D
A
T
-
D
P
R
D
A
Y
V
L
T
T
A
L
A
I
G
--
R
M
R
--------------------------
32
HHSearch
49.33
11%
-178
- C4 -
3HHG
-
?
A:
[8-53]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
V
F
V
------------
Q
V
V
E
-
S
----
G
S
F
------
S
R
A
A
E
Q
L
A
M
A
N
S
A
V
------------------------
S
R
I
V
K
R
L
E
E
K
---
L
G
V
N
L
L
-
N
R
T
-------------------------------------------
21
HHSearch
46.80
15%
-194
- C4 -
3FXQ
1
TSAR_COMTE
A:
[5-51]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
L
Q
A
L
I
------------
C
I
E
E
-
V
----
G
S
L
------
R
A
A
A
Q
L
L
H
L
S
Q
P
A
L
------------------------
S
A
A
I
Q
Q
L
E
D
E
---
L
K
A
P
L
L
-
V
R
--------------------------------------------
24
HHSearch
45.73
16%
-123
- C4 -
4X6G
-
?
A:
[13-57]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Y
I
V
------------
T
L
A
Q
-
E
----
Q
H
F
------
G
R
A
A
E
R
C
H
V
S
Q
P
T
L
------------------------
S
V
G
V
K
K
L
E
D
E
---
L
G
V
L
I
F
-
E
R
S
-------------------------------------------
31
HHSearch
45.09
19%
-170
- C4 -
3SZP
-
?
A:
[5-51]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
N
L
F
R
------------
L
V
V
E
-
N
----
G
S
Y
------
T
S
T
S
K
K
T
M
I
P
V
A
T
I
------------------------
T
R
R
I
Q
A
L
E
D
S
---
L
N
L
R
L
L
-
N
R
H
-------------------------------------------
22
HHSearch
44.90
15%
-134
- C4 -
3ISP
-
Y1985_MYCTU
A:
[10-58]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
A
A
L
A
------------
A
V
V
E
-
L
----
G
S
F
------
D
A
A
A
E
R
L
H
V
T
P
S
A
V
------------------------
S
Q
R
I
K
S
L
E
Q
Q
---
V
G
Q
V
L
V
-
V
R
E
-------------------------------------------
10
PsiBlast_CBE
43.81
31%
-65
- C4 -
3ONQ
1
?
D:
[201-247]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
S
------------
T
F
L
K
Y
G
----
S
S
L
------
E
N
T
A
K
E
L
N
V
H
P
N
T
V
------------------------
R
Y
R
L
K
R
A
A
E
T
---
T
G
W
D
A
T
-
D
P
R
D
A
-----------------------------------------
14
HHSearch
43.59
18%
-90
- C4 -
1ETO
-
FIS_ECOLI
A:
[64-96]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
M
------------
V
M
Q
Y
T
L
----
G
N
Q
------
T
R
A
A
L
M
M
G
I
N
R
G
T
L
------------------------
R
K
K
L
K
K
Y
G
----------------------------------------------------------
46
Fugue
43.42
21%
64
- C5 -
2CVH
-
RADB_THEKO
A:
[1-220]
-MLSTG
T
K
S
L
D
S
L
L
---
G
G
G
F
------------
A
P
G
V
L
T
Q
V
------
Y
G
-----------------
P
Y
-
A
S
G
K
T
T
L
A
L
Q
T
G
L
L
S
------------
G
K
K
V
---
A
-
Y
V
D
T
E
G
G
--------------
F
----
S
P
E
R
L
V
Q
M
-
A
E
T
R
----------------------------------------
G
L
---------
N
P
E
E
A
L
---
S
R
F
I
L
F
T
P
--------------------------
S
D
-----------------------------
F
K
E
-----
Q
R
R
V
I
G
S
L
K
K
T
V
D
S
N
-----
F
A
L
V
V
V
D
-------
S
I
T
A
H
Y
R
A
E
--
E
N
RSG
L
I
A
E
L
S
R
Q
L
Q
-------------------------------
V
--
L
L
W
I
A
R
K
H
N
I
----------------------------
P
-----
V
I
V
-
I
N
Q
V
H
F
D
S
R
T
E
M
T
K
P
---
V
-------
A
E
Q
T
L
G
Y
R
C
K
------------
D
I
L
R
L
D
----
K
L
P
------
K
P
G
L
R
V
A
V
L
E
R
H
R
F
------------------------
R
---------------------
P
E
G
L
M
A
Y
F
R
I
T
E
R
GI
E
D
V
E
-------------------------
49
Fugue
42.71
12%
-33
* C5 *
1EFV
2
ETFB_HUMAN
B:
[4-255]
------
L
R
V
L
V
A
V
K
-----
R
V
------------
I
D
Y
A
V
K
I
R
-----------
V
K
P
D
R
T
G
V
V
T
D
G
V
K
H
S
-
M
N
P
F
C
E
I
A
V
E
E
A
V
R
L
K
---------
E
K
K
L
----------------------------------------------
V
K
E
V
I
A
V
S
--------------
C
G
P
----------------
A
---------
Q
C
Q
E
T
I
---
R
T
A
L
A
M
G
A
-------
D
R
-------
G
I
H
V
EVP
P
A
E
A
E
-----------------------------
R
L
G
-----
P
L
Q
V
A
R
V
L
A
K
L
A
E
K
E
-----
K
V
-
D
L
V
L
-------
L
G
K
Q
A
I
D
D
D
------------
C
N
Q
T
G
-------------------------------
Q
--
M
T
A
G
F
L
D
W
P
Q
G
T
F
A
S
----
Q
V
T
L
E
G
-------------
D
-----
K
L
K
-
V
E
R
E
I
D
G
G
L
E
T
L
R
L
K
---
L
P
A
V
V
T
--
A
D
L
R
L
N
E
P
R
Y
------------
A
T
L
P
N
I
----
M
K
A
K
K
K
K
I
E
V
I
K
P
G
D
L
G
V
D
L
T
S
-------------------------
K
L
S
V
I
S
V
E
D
P
---
P
Q
R
T
A
G
-
V
K
V
E
T
T
E
D
L
V
A
K
L
K
E
--
I
G
R
I
-------------------------
1
PsiBlast_PDB
41.65
31%
-60
- C4 -
3ONQ
2
?
A:
[201-247]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
S
------------
T
F
L
K
Y
G
----
S
S
L
------
E
N
T
A
K
E
L
N
V
H
P
N
T
V
------------------------
R
Y
R
L
K
R
A
A
E
T
---
T
G
W
D
A
T
-
D
P
R
D
A
-----------------------------------------
12
PsiBlast_CBE
40.49
31%
-60
- C4 -
3ONQ
3
?
B:
[201-247]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
S
------------
T
F
L
K
Y
G
----
S
S
L
------
E
N
T
A
K
E
L
N
V
H
P
N
T
V
------------------------
R
Y
R
L
K
R
A
A
E
T
---
T
G
W
D
A
T
-
D
P
R
D
A
-----------------------------------------
35
HHSearch
38.47
16%
-78
- C4 -
3E7L
2
?
A:
[27-58]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
R
E
Y
D
----
Y
D
L
------
K
R
T
A
E
E
I
G
I
D
L
S
N
L
------------------------
Y
R
K
I
K
S
L
N
I
---------------------------------------------------------
48
Fugue
37.27
12%
-68
- C- -
1VI7
-
YIGZ_ECOLI
A:
[3-208]
--------------------------------------------------------
L
M
E
S
W
L
I
P
A
A
P
V
-
T
V
V
E
E
I
--------------------------------------------------------
K
K
S
R
F
I
T
M
-
L
A
H
T
D
G
V
E
A
A
K
A
--------------
F
V
E
S
V
-------------
R
A
---------
E
H
P
D
A
R
---
H
H
C
V
A
W
V
A
G
A
P
D
D
S
Q
Q
L
-------
G
F
S
D
---
D
G
E
P
A
-----------------------------
G
T
A
-----
G
K
P
M
L
A
Q
L
M
G
S
G
V
G
E
-----
I
T
A
V
V
V
R
-------
Y
Y
G
G
I
L
L
G
T
--
G
G
---
L
V
K
A
Y
G
G
G
V
N
-------------------------------
Q
--
A
L
R
Q
L
T
T
Q
R
K
T
P
-
L
T
----
E
Y
T
L
Q
C
-------------
E
-----
Y
H
Q
-
L
T
G
I
E
A
L
L
G
Q
C
D
G
K
I
---
I
N
S
D
Y
Q
--
A
F
V
L
L
R
V
A
L
P
-----------------------------------------
A
A
K
V
------------------------
A
E
F
S
A
K
L
A
D
F
---
S
R
G
S
L
Q
-------------
L
L
A
--
I
E
E
E
-------------------------
41
HHSearch
37.27
19%
-68
* C4 *
4CH7
-
?
A:
[7-73]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
L
K
------------
I
I
Q
K
D
I
PLVK
E
P
F
------
S
V
L
A
Q
E
V
G
I
E
E
G
K
L
------------------------
L
K
T
I
E
K
L
V
E
D
--------------------------------------------------------
40
HHSearch
36.88
9%
-169
- C4 -
1TC3
2
TC3A_CAEEL
C:
[14-47]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
------------
V
M
K
L
L
N
----
V
S
L
------
H
E
M
S
R
K
I
S
R
S
R
H
C
I
------------------------
R
V
Y
L
K
D
P
V
S
---------------------------------------------------------
5
PsiBlast_PDB
36.20
35%
-79
- C4 -
3UT2
-
KATG2_MAGO7
A:
[705-737]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
R
S
E
K
Y
K
G
S
R
---
A
D
L
V
F
G
--
S
H
A
E
L
R
A
I
A
E
------------
V
Y
A
E
N
G
----
N
----------------------------------------------------------------------------------------------------------------