@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu38840: (2016-08-04 )
MKKRMLDVLMLVIGAFFFALAVNLFAIPNDLGEGGVTGITLILYYLFQWSPGVTNFILNAFLLLIGYKFLDGKTTVYTIIAVAANSLFLHLTHGWSIPSDELIINTIFAGVFAGVGIGMIIRVGGTTAGSAILARIANKYLDWNISYALLFFDLIVVFSSYFIIGAEKMMFTIVMLYIGTKVMDFIIEGLNTKKAITVISENKSEIAEQVNTLMDRGVTILSGKGNYTGQSKEILYIVINKQELSMLKKIIRSCDKKAFVIVHDVRDVFGEGFVDISK
Atome Classification :
(20 SA)
------------........--------.--10........20........30........40.----.......50........60----........70.------.......80........90.-.......100----.......110-------........120..---.--....130.......140.....--..150.......160.....----------..170....-----------.-..180.......190.......200--.---------......210..-.....220-......-------.--------.---------------230--------------....-.....240........250-...---.-----...260.......270......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------MK
K
R
M
L
D
V
--------
L
--
M
L
V
I
G
A
F
F
F
A
L
A
V
N
L
FAIPNDLGEG
G
V
T
G
I
T
L
I
----
L
Y
Y
L
FQWSP
G
V
T
N
F
I
L
N
A
F
----
L
L
L
I
G
Y
KFLDG------K
T
T
V
Y
T
I
I
A
VAAN
S
L
F
L
H
L
T-HGWSIPS
D
E
L
----
I
I
N
T
I
F
A
G
V
--------
F
A
GVG
I
G
M
I
I
R
VG---G--T
T
A
G
S
A
I
L
A
R
I
A
N
K
Y
LDW
N
I
S
Y
--
A
L
L
F
F
D
L
I
V
V
F
S
S
Y
F
I
IG
A
E
----------
K
M
M
F
T
I
V
M
L
-----------
Y
-
I
G
T
K
V
M
D
F
I
I
EGLNTK
K
A
I
T
V
ISE
N
--
K
---------
S
E
I
A
E
Q
V
N
T
L
M
-DRG
V
T
I
L--SGKGNY-------T--------G---------------Q----------------S
K
E
I
-
L
Y
I
V
I
N
-
K
Q
E
L
S
M
L
K
K
I
I
R
-SCD---K-----
K
A
F
V
I
V
H
D
V
R
D
V
F
GEGFVDISK
3
HHSearch
63.06
30%
-261
- C4 -
3HLU
-
?
A:
[6-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
V
Y
I
V
S
A
K
--
R
---------
K
I
I
A
D
R
M
L
Q
E
L
-
D
L
G
V
T
M
L
--
Q
A
V
G
A
Y
-------
K
--------
N
---------------
N
----------------
E
T
E
V
-
I
M
C
V
M
R
-
K
A
T
L
V
K
V
R
N
L
L
K
-
E
V
D
---
P
-----
D
A
F
M
I
V
S
---------------
29
Fugue
62.10
24%
-12
* C5 *
3NDH
10
?
A:
[5-225]
--------HHHH
E
F
D
H
L
K
D
L
--------
F
R
D
R
L
I
I
D
K
V
Q
R
R
L
P
Y
M
F
Q
L
A
E
L
E
S
S
R
A
G
K
V
G
M
E
----------------
V
G
S
L
R
E
R
I
I
----
S
S
L
L
I
Y
K
F
--
G
------
E
K
N
V
E
T
D
L
P
I
T
E
P
E
I
D
V
K
L
F
-------
G
S
P
I
----
S
I
K
T
I
T
G
K
E
--------
P
A
G
V
---
K
L
I
W
T
V
---
D
--
A
T
K
A
R
Q
F
L
E
T
-------
W
H
P
R
F
-------
D
L
I
L
V
H
I
N
W
S
S
L
G
G
------------------
V
Y
-----------
Y
-
I
P
D
Y
V
Q
Q
R
I
F
D
E
I
G
K
D
K
Y
I
K
L
P
K
Q
G
--
T
---------
N
P
-----------
R
G
V
E
I
----------------------------------------------------------
S
N
E
A
-
L
K
E
I
M
T
-
D
E
E
-
T
M
S
I
K
I
E
W
-
K
K
T
---
N
-----
V
Q
Y
N
A
F
K
R
W
V
D
L
W
S
E
G
------
1
PsiBlast_PDB
56.16
32%
-251
- C4 -
3HLU
-
?
A:
[10-75]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
S
A
K
--
R
---------
K
I
I
A
D
R
M
L
Q
E
L
-
D
L
G
V
T
M
L
--
Q
A
V
G
A
Y
-------
K
--------
N
---------------
N
----------------
E
T
E
V
-
I
M
C
V
M
R
-
K
A
T
L
V
K
V
R
N
L
L
K
-
E
V
D
---
P
-----
D
A
F
M
I
V
S
---------------
26
Fugue
55.72
20%
5
- C2 -
4TXD
1
?
A:
[21-369]
KRD
V
L
A
E
L
GLGD
L
R
P
Y
L
R
S
I
GDKDRIFP
K
--
A
H
R
I
E
V
V
F
L
V
R
A
A
N
Y
L
L
L
R
T
E
-
G
A
G
T
I
N
M
T
T
L
E
Y
SG
G
A
M
E
V
P
V
I
Q
P
Q
K
L
M
A
V
T
R
R
Q
----
M
L
Q
L
L
R
E
Y
R
D
S
LD
E
V
S
K
R
W
L
V
Q
E
V
I
G
K
A
K
D
L
G
F
K
K
V
S
-
E
E
W
N
C
T
I
Q
G
M
DGFC
P
H
C
T
I
F
G
A
A
L
T
EQHNEK
F
G
G
L
S
I
G
I
K
T
R
V
R
F
D
P
A
--
F
A
T
Q
R
R
I
T
P
E
T
H
N
K
V
T
E
G
H
L
S
M
T
G
Q
A
L
F
S
E
V
H
V
E
P
G
T
V
F
I
G
R
A
E
L
V
DLT
E
P
E
L
V
A
T
L
Y
S
L
A
T
L
R
E
L
G
G
RSG
I
Y
G
T
-
V
R
V
E
I
L
G
V
K
A
G
K
Y
A
S
T
T
A
Y
D
L
A
A
E
N
--
A
---------
G
K
G
Y
E
E
V
K
K
N
L
-
K
E
R
L
E
K
L
-----
G
F
T
-------
P
--------
V
---------------
D
----------------
N
S
K
L
-
L
A
A
V
D
H
-
K
D
P
N
G
L
F
K
D
L
W
R
-
S
S
I
---
D
-----
F
A
E
K
M
V
K
W
V
E
E
L
K
G
G
G
------
21
HHSearch
43.92
13%
-156
- C4 -
4RWW
3
?
A:
[12-63]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
--
S
---------
N
R
L
S
D
A
L
T
K
-
G
-
N
F
G
A
T
K
L
--
A
T
T
G
G
F
-------
L
--------
K
---------------
A
----------------
G
N
T
T
-
F
I
I
G
T
E
-
D
E
R
V
E
D
A
L
A
I
I
K
-
E
N
--------------------------------
23
HHSearch
42.44
22%
-21
- C4 -
1O51
3
Y021_THEMA
A:
[14-112]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
L
K
I
Y
L
G
E
--
K
DKHSGKP
L
F
E
Y
L
V
K
R
A
Y
E
L
G
-
M
K
G
V
T
V
Y
--
R
G
I
M
G
F
-------
G
--------
H
----------------P
D
--------------
L
P
I
V
-
L
E
I
V
D
E
-
E
E
R
I
N
L
F
L
K
E
I
D
-
N
I
D
---
F
-----
D
G
L
V
F
T
A
D
V
N
V
V
K
---------
31
Fugue
40.21
20%
-54
- C5 -
1Y88
10
Y1548_ARCFU
A:
[16-199]
-----------------------------------
N
L
Y
F
Q
G
H
M
V
A
R
L
L
E
E
H
--------
G
F
E
T
K
----
T
N
V
I
V
Q
G
N
C
V
E
Q
E
I
D
V
V
A
E
R
DGE
R
Y
M
I
E
C
K
F
H
N
I
------
P
V
Y
T
G
L
K
E
A
M
Y
T
Y
A
R
F
L
D
V
E
K
H
G
F
T
Q
P
W
--
I
----
F
T
N
T
K
F
S
E
E
--------
A
K
K
Y
A
G
C
V
G
I
K
L
T
---
G
WS
Y
P
E
K
E
G
I
E
V
L
L
E
S
K
G
L
-----
Y
--
P
I
T
I
L
R
I
D
K
E
V
L
D
E
L
V
R
--
A
----------
G
L
V
F
C
R
D
V
V
-----------
S
-
A
G
E
E
K
L
R
E
I
--
G
L
S
A
K
K
A
R
E
V
I
A
E
A
--
K
---------
K
V
I
G
G
S
---------------------------------------------------------------------------------------------------------------------------------
32
Fugue
39.55
12%
-111
- C1 -
1LKV
2
FLIG_THEMA
X:
[12-224]
------------
D
P
V
Q
L
V
N
F
--------
L
--
Q
-------------------------
S
E
H
P
Q
T
I
----
A
V
V
L
S
Y
L
D
P
P
V
A
A
Q
I
L
G
A
L
----
P
E
E
L
Q
T
E
V
L
K
R
------
I
A
L
L
E
R
T
S
P
E
V
V
K
E
I
E
R
N
L
E
-
K
K
I
S
G
F
V
S
R
T
----
F
S
K
V
-------------------------
G
---
G
--
I
D
T
A
A
E
I
M
N
N
L
-------
D
R
T
T
--
E
K
K
I
M
D
K
L
V
Q
E
N
P
E
L
A
D
E
I
R
----------
R
R
M
F
V
F
E
D
I
-----------
L
K
L
D
D
R
S
I
Q
L
V
L
R
E
V
D
T
R
D
L
A
L
A
L
K
G
A
--
S
---------
D
E
L
K
E
K
I
F
K
N
M
-
S
-----------------------------------------------------------------
K
R
-
A
A
A
L
L
K
-
D
E
L
E
Y
M
G
P
V
R
L
K
-
D
V
E
---
E
-----
A
Q
Q
K
I
I
N
I
I
R
R
L
E
E
A
G
E
I
V
I
A
R
10
HHSearch
38.90
20%
63
- C4 -
2CZ4
3
?
A:
[26-118]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
V
T
I
V
A
E
S
LL
E
---------
K
R
L
V
E
E
V
K
R
L
G
-
A
K
G
Y
T
I
T
--
P
A
R
G
E
G
-------
S
RGIRSVDW
E
---------------
G
----------------
Q
N
I
R
-
L
E
T
I
V
S
-
E
E
V
A
L
R
I
L
Q
R
L
Q
-
E
E
Y
FPH
Y
-----
A
V
I
A
Y
V
E
N
V
W
V
V
R
G
E
K
Y
-----
12
HHSearch
38.61
19%
16
- C4 -
2O66
2
GLNB_ARATH
A:
[14-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
V
E
A
I
V
R
P
WR
I
---------
Q
Q
V
S
S
A
L
L
K
I
G
-
I
R
G
V
T
V
S
--
D
V
R
G
F
G
--------ED
K
-----
F
---------------
V
----------------
A
K
V
K
-
M
E
I
V
V
K
-
K
D
Q
V
E
S
V
I
N
T
I
I
-
E
G
A
---
R
TGEIG
D
G
K
I
F
V
L
P
V
S
D
V
I
R
--------
14
HHSearch
38.53
16%
20
- C4 -
2GW8
-
?
A:
[3-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
E
A
I
V
K
P
FK
L
---------
D
D
V
R
E
A
L
T
E
I
G
-
I
T
G
M
T
V
S
--
E
V
K
G
F
G
-------
R
---------VD
F
------------
L
----------------
P
K
I
K
-
I
E
L
V
L
A
-
D
D
A
V
E
R
A
I
D
V
I
V
-
E
V
A
---
R
SGKIG
D
G
K
I
F
V
L
P
V
E
E
A
I
R
I
-------
15
HHSearch
37.73
18%
12
- C4 -
4AFF
3
GLNB_SYNE7
A:
[3-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
E
A
I
I
R
P
FK
L
---------
D
E
V
K
I
A
L
V
N
A
G
-
I
V
G
M
T
V
S
--
E
V
R
G
F
G
-------
R
QKR-----
G
SEYTVE
F
--------
L
----------------
Q
K
L
K
-
L
E
I
V
V
E
-
D
A
Q
V
D
T
V
I
D
K
I
V
-
A
A
A
---
R
TGENG
D
G
K
I
F
V
S
P
V
D
Q
T
I
R
I
-------
9
HHSearch
37.61
19%
38
- C4 -
2NS1
1
GLNK_ECOLI
B:
[6-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
V
T
V
I
I
K
P
FK
L
---------
E
D
V
R
E
A
L
S
S
I
G
-
I
Q
G
L
T
V
T
--
E
V
K
G
F
G
-------
R
--------
Q
---------------
K
G
H
A
ELYRGAEFS
V
N
F
L
P
K
V
K
-
I
D
V
A
I
A
-
D
D
Q
L
D
E
V
I
D
I
V
S
-
K
A
A
---
Y
TGKIG
D
G
K
I
F
V
A
E
L
Q
R
V
I
R
I
-------
11
HHSearch
37.28
21%
30
- C4 -
3NCQ
6
?
A:
[3-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
E
A
I
V
R
A
EK
F
---------
P
E
V
K
A
A
L
E
E
R
G
-
F
Y
G
M
T
V
T
D
V
K
G
R
G
Q
Q
-------
G
--------
G
M
Q
I
Q
F
RGRTMEVTL-
L
----------------
P
K
V
K
-
L
E
I
V
V
K
-
D
D
A
V
E
E
V
I
G
L
I
V
-
N
S
A
---
F
TGSPG
D
G
K
I
F
I
I
P
V
E
D
V
V
R
I
-------
22
HHSearch
36.20
16%
41
* C4 *
2J9C
9
Y059_METJA
A:
[5-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
E
A
I
I
R
P
EK
L
---------
E
I
V
K
K
A
L
S
D
A
G
-
Y
V
G
M
T
V
S
E
V
K
G
R
G
V
Q
GGI
V
E
R
Y
R
--------
G
R
E
Y
I
V
D
L
--------
I
----------------
P
K
V
K
-
I
E
L
V
V
K
-
E
E
D
V
D
N
V
I
D
I
I
C
-
E
N
A
---
R
TGNPG
D
G
K
I
F
V
I
P
V
E
R
V
V
R
V
R
T
-----
19
HHSearch
36.17
18%
35
- C4 -
1HWU
-
?
A:
[3-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
V
T
A
I
I
K
P
FK
L
---------
D
E
V
R
E
S
L
A
E
V
G
-
V
T
G
L
T
V
T
--
E
V
K
G
F
G
-----------------YVV
D
F
----------
L
----------------
P
K
V
K
-
I
E
V
V
V
D
-
D
K
V
V
E
Q
A
V
D
A
I
I
-
K
A
A
---
R
TGKIG
D
G
K
I
F
V
Q
E
V
E
Q
V
I
R
I
-------
6
HHSearch
35.34
16%
-28
- C4 -
3L7P
-
?
A:
[3-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
E
A
I
I
R
S
DK
L
---------
E
D
L
K
A
A
L
V
Q
S
G
F
I
K
G
M
T
I
S
--
Q
V
L
G
F
G
-----------------TL-------------
L
----------------
A
K
V
K
-
V
E
I
V
A
H
-
D
A
A
V
E
E
M
I
T
T
I
S
-
Q
A
V
KTG-------
G
K
I
F
V
S
P
V
D
E
I
V
R
I
-------
5
HHSearch
34.77
13%
4
- C4 -
4RLE
1
YAAQ_BACSU
A:
[12-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
A
V
V
Q
D
Q
D-
S
---------
N
R
L
L
K
T
L
T
D
-
H
-
N
F
R
V
T
K
L
--
A
T
T
G
G
F
-------
L
--------
K
---------------
S
----------------
G
N
T
T
-
F
M
I
G
V
E
-
D
I
R
V
N
K
A
L
S
L
I
K
-
E
N
G
---
Q
-----
K
R
--------------------
13
HHSearch
33.99
17%
10
- C4 -
1VFJ
-
?
A:
[3-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
V
A
I
V
R
P
EK
L
---------
N
E
V
L
K
A
L
F
Q
A
E
-
V
R
G
L
T
L
S
--
R
V
Q
G
H
G
-------
G
--------
E
TER
V
E
T
Y
R
GTTVKME
L
----------------
H
E
K
V
R
L
E
I
G
V
S
-
E
P
F
V
K
P
T
V
E
A
I
L
-
K
A
A
---
R
TGEVG
D
G
K
I
F
V
L
P
V
E
K
V
Y
R
I
-------
4
HHSearch
33.91
10%
13
- C4 -
3DFE
2
?
A:
[7-102]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
L
V
I
V
T
E
K
VL
L
---------
K
K
V
A
K
I
I
E
E
A
G
-
A
T
G
Y
T
V
V
--
D
T
G
G
---------------------------------------------------
S
N
V
K
-
F
E
V
L
T
E
N
R
E
M
A
E
K
I
A
D
Q
V
A
I
K
F
F
TD-
Y
-----
A
G
I
I
Y
I
C
E
A
E
V
L
Y
G
--------