@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu39900: (2016-08-06 )
MINESTVLSKNPEMPSRKYLKSIIIEPGITLNEMASDIYNHIDGKVSIHDICSKIVNEYDVDYQTCLEDCMELFELLIDHEAIKVKQGA
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10...---...--..20--....-.----..----.--.30..-....--..--40...-----...------------..-------50........60----........70--------..------..-.--------.-..80........-----------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MINESTVLSKNPEM---
P
S
R
--
K
Y
L
---
K
S
I
I-I----EP----G--I
T
L
N
E
-
M
A
S
D
--
I
Y
--
N
HIDG-----
K
V
S
------------
I
H
-------
D
I
C
S
K
I
V
N
EYDV----
D
Y
Q
T
C
L
E
D
C
M
--------
E
L
------
F
E
-
L
--------
L
-IDHE
A
I
K
VKQGA-----------------------------------------------------------------------------------------
9
HHSearch
66.14
18%
0
- C4 -
3G2B
1
PQQD_XANCP
A:
[7-95]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
R
D
S
C
P
A
L
R
A
G
V
---
R
L
Q
HD
R
A
R
---
D
Q
W
V
L
L
----
A
P
----
E
R
V
V
E
L
D
D
-
I
A
L
V
--
V
A
--
Q
R
Y
D
G
-----
T
Q
S
------------
L
A
-------
Q
I
A
Q
T
L
A
A
E
F
D
A
----
D
A
S
E
I
E
T
D
V
I
--------
E
L
------
T
T
-
T
--------
L
-
H
Q
K
R
L
L
R
L
---------------------------------------------------------------------------------------------
29
Fugue
65.44
17%
1
- C4 -
3G2B
1
PQQD_XANCP
A:
[6-95]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
S
R
D
S
C
P
A
L
R
A
G
V
---
R
L
Q
--
H
D
R
ARD
Q
W
V
L
-
L
----
A
P
----
E
R
V
V
E
L
D
D
-
I
A
L
V
--
V
A
--
Q
R
Y
D
G
-----
T
Q
S
------------
L
A
-------
Q
I
A
Q
T
L
A
A
E
F
D
A
----
D
A
S
E
I
E
T
D
V
I
--------
E
L
------
T
T
-
T
--------
L
-
H
Q
K
R
L
L
R
L
---------------------------------------------------------------------------------------------
18
HHSearch
58.63
8%
-313
- C4 -
5EHK
-
?
A:
[232-292]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
R
S
P
-
V
V
A
E
--
I
L
--
G
A
A
R
R
-----
P
V
L
------------
A
G
-------
R
L
A
Q
S
V
A
Q
R
F
E
L
----
P
A
D
----
R
V
T
--------
G
L
------
L
A
-
D
--------
M
-
A
A
Q
E
L
L
I
T
---------------------------------------------------------------------------------------------
37
Fugue
56.37
30%
-15
- C2 -
4DFC
-
UVRA_ECOLI
B:
[128-250]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAST
V
S
Q
M
V
D
N
---
V
L
S
Q
P
E
G
---
K
R
L
--
M
L
L
---
A
P
I
I
-
K
----
E
R
KGEH
T
--
K
T
L
E
N
-
L
A
S
Q
GY
I
R
--
A
R
I
D
G
-----
E
V
C
D
LSDPPKLELQ
K
K
H
-------
T
I
E
V
-
V
V
D
R
F
K
V
RL
T
Q
R
L
A
E
S
F
E
T
A
L
--------
E
L
S
G
G
T
A
V
V
A
-
D
--------
M
-
D
D
P
K
A
E
E
L
L
F
S
A
N----------------------------------------------------------------------------------------
11
HHSearch
49.30
11%
-131
- C4 -
3DEE
-
?
A:
[172-229]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
L
D
G
-
F
D
M
M
--
L
L
--
E
I
M
G
S
S
----
A
L
S
------------
F
D
-------
T
L
A
Q
T
L
V
E
F
M
P
K
----
A
D
-
N
W
K
N
I
L
L
--------
G
K
------
W
S
-
G
--------
W
-
I
E
Q
R
I
I
I
P
S
--------------------------------------------------------------------------------------------
30
Fugue
48.90
27%
-13
- C4 -
4U1D
-
EIF3A_YEAST
A:
[6-493]
FR
P
E
N
A
I
K
R
A
D
E
L
I
S
V
GE
K
Q
A
A
L
Q
S
L
H
D
F
I
T
ARRIRWATPSTV
E
P
V
V
F
K
F
L
E
I
G
V
E
L
KK
G
K
L
L
K
D
G
L
H
Q
Y
K
K
L
I
QGS
T
E
G
L
V
S
V
G
A
V
A
R
K
F
I
D
L
V
E
S
K
I
A
S
EQ
T
R
A
D
E
L
Q
K
Q
E
I
D
A
I
T
S
W
L
RFTWES
Y
R
A
V
L
D
L
L
R
N
N
A
L
L
E
I
T
Y
SG
V
V
K
K
T
M
H
F
C
L
K
Y
Q
R
K
N
E
F
K
R
L
A
EMLRQHLDAANY
Q
Q
S
K
S
G
N
N
L
V
D
L
S
D
A
D
T
L
Q
R
Y
LD
Q
R
F
Q
Q
V
D
V
S
V
K
L
E
L
W
H
E
AYRSIE
D
V
F
H
L
M
K
I
S
K
R
A
P
K
P
S
T
L
AN
Y
Y
E
N
L
V
K
V
F
F
V
S
G
D
P
L
L
HTTAW
K
K
F
Y
K
L
Y
S
T
N
P
R
A
T
E
E
E
FKTYSSTIF
L
S
A
I
S
T
Q
L
D
E
I
P
S
I
G
Y
D
P
H
L
--
R
M
Y
---
R
L
L
N
-
L
----
D
A
----
K
--
P
T
R
K
E
-
M
L
Q
S
--
I
I
E
D
E
S
I
Y
G
-----
K
V
D
-------------------------------------------
E
E
L
K
--------
E
L
------
Y
D
-
I
--------
I
E
V
N
F
D
V
D
T
V
K
Q
Q
L
E
N
L
L
V
K
L
S
S
K
T
Y
F
S
Q
Y
I
A
P
L
R
D
VIMR
R
V
F
V
A
A
S
Q
KFTTVSQSE
L
Y
K
L
A
T
L
P
A
P
L
D
L
S
AW
D
I
E
K
S
L
LQAAVEDYVSITIDHESAKVTFAK
32
Fugue
48.89
19%
0
- C3 -
2DB2
-
DHX30_HUMAN
A:
[51-169]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GS
S
G
S
S
G
A
S
R
D
L
L
K
--
E
F
---
P
Q
P
--
K
N
L
---
L
N
S
V
-
I
----
G
R
----
A
--
L
G
I
S
H
-
A
K
D
K
--
L
V
--
Y
V
H
T
N
GPK
K
K
K
V
T
------------
L
H
I
KWP
K
S
V
E
V
E
G
Y
G
S
K
K
I
D
A
----
E
R
Q
A
A
A
A
A
C
Q
--------
L
F
------
K
G
-
W
GLLGPRN
E
L
-
F
D
A
A
K
Y
R
V
L
A
D
R
F
GSGPSSG---------------------------------------------------------------------------------
38
Fugue
48.47
21%
51
- C3 -
2LTL
-
NFU1_YEAST
A:
[1-119]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGHH
H
H
H
H
S
H
MNSQR
L
I
H
I
K
T
L
T
T
P
N
E
N
A
L
K
F
L
S
T
D
G
E
M
---
L
Q
T
--
R
G
S
---
K
S
I
V
-
I
K
NTD
E
N
----
L
--
I
N
H
S
K
-
L
A
Q
Q
--
I
F
--
L
Q
C
P
G
-----
V
E
S
------------
L
M
I
G
-----
D
D
F
L
T
I
N
K
D
R
M
V
----
H
W
N
S
I
K
P
E
I
I
--------
D
L
------
L
T
-
K
--------
Q
-
L
A
Y
G
E
D
V
I
S
K
E
------------------------------------------------------------------------------------------
19
HHSearch
48.35
22%
-235
- C- -
3EET
-
?
A:
[35-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
I
R
E
E
Y
G
V
----
S
D
T
V
A
----
L
--------
E
A
------
R
K
-
V
--------
L
-
M
A
E
G
L
V
E
G
R
S
G
------------------------------------------------------------------------------------------
8
PsiBlast_PDB
47.82
25%
-131
- C4 -
3LV9
1
?
A:
[40-115]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
---
D
S
E
--
E
K
I
---
L
A
I
L
-
K
----
E
E
----
G
--
V
T
R
Y
P
-
V
C
R
K
--
N
K
--
D
D
I
L
G
-----
F
V
H
------------
I
R
-------
D
L
Y
N
Q
K
I
N
E
N
K
I
----
E
L
E
E
I
L
R
D
I
I
--------
Y
I
------
S
E
N
L
--------
T
-
I
D
K
A
L
E
R
I
R
K
-------------------------------------------------------------------------------------------
2
PsiBlast_PDB
47.62
36%
-238
- C4 -
2QT3
1
ATZC_PSESD
A:
[194-220]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
N
V
E
G
-----
S
L
----------------------
D
L
C
F
K
L
A
K
E
Y
D
V
----
D
I
D
Y
H
I
H
D
-------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
47.27
19%
3
- C3 -
2ABO
-
?
A:
[6-136]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGT
Y
W
A
T
L
I
T
A
F
L
K
T
V
S
KVEELDCVD
S
A
V
L
V
D
V
S
K
I
I
T
L
T
Q
E
F
----
R
R
--
H
Y
D
---
S
V
Y
R
-
A
----
D
Y
----
G
--
P
A
L
K
N
-
W
K
R
D
--
L
S
--
K
L
F
T
S
-----
L
F
V
------------
D
V
-------
I
N
S
G
R
I
V
G
F
F
D
V
----
G
R
Y
V
C
E
E
V
L
C
PGSWT
E
D
H
E
L
------
L
N
-
D
--------
C
-
M
T
H
F
F
I
E
N
N
L
M
N
HFPLED-----------------------------------------------------------------------------------
14
HHSearch
47.20
16%
-35
- C4 -
4V1T
1
?
A:
[6-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
Q
I
Q
P
H
F
---
H
V
E
--
V
I
E
---
P
K
Q
V
Y
L
----
L
G
EQ--
A
N
-
H
A
L
T
G
Q
L
Y
C
Q
--
I
L
--
P
L
L
N
G
-----
Q
Y
T
------------
L
E
-------
Q
I
V
E
K
L
D
G
E
--
V
----
P
----
P
E
Y
I
D
--------
Y
V
------
L
E
-
R
--------
L
-
A
E
K
G
Y
L
T
E
A
--------------------------------------------------------------------------------------------
20
HHSearch
46.83
9%
-215
- C4 -
4P3V
-
DBHB_ECOLI
A:
[1-51]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
------------
K
S
-------
Q
L
I
D
K
I
A
A
G
A
D
I
----
S
K
A
A
A
G
R
A
L
D
--------
A
I
------
I
A
-
S
--------
V
-
T
----------------------------------------------------------------------------------------------------
25
HHSearch
46.35
13%
-186
- C4 -
2LSO
-
H1X_HUMAN
A:
[23-67]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-----
G
S
S
------------
L
A
-------
K
I
Y
T
E
A
K
K
V
P
W
F
----
D
Q
Q
N
G
R
T
Y
L
K
--------
Y
S
------
I
K
-
A
--------
L
-
V
Q
N
D
T
L
L
Q
V
K
G
------------------------------------------------------------------------------------------
4
PsiBlast_PDB
45.77
36%
-258
- C4 -
4CQD
3
ATZC_PSESD
A:
[214-240]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
N
V
E
G
-----
S
L
----------------------
D
L
C
F
K
L
A
K
E
Y
D
V
----
D
I
D
Y
H
I
H
D
-------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
45.26
18%
-241
- C4 -
3EDP
1
?
A:
[36-73]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
T
A
L
Q
E
I
Y
S
S
----
S
R
T
T
I
----
R
--------
R
A
------
V
D
-
L
--------
L
-
V
E
E
G
L
V
V
R
K
N
G
------------------------------------------------------------------------------------------
5
PsiBlast_PDB
45.24
36%
-262
- C4 -
5AKQ
2
ATZC_PSESD
A:
[214-240]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
N
V
E
G
-----
S
L
----------------------
D
L
C
F
K
L
A
K
E
Y
D
V
----
D
I
D
Y
H
I
H
D
-------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
44.54
36%
-237
- C4 -
4CQB
3
ATZC_PSESD
A:
[214-240]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
N
V
E
G
-----
S
L
----------------------
D
L
C
F
K
L
A
K
E
Y
D
V
----
D
I
D
Y
H
I
H
D
-------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
43.65
3%
-241
- C4 -
1MUL
-
DBHA_ECOLI
A:
[1-47]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
------------
K
T
-------
Q
L
I
D
V
I
A
E
K
A
E
L
----
S
K
T
Q
A
K
A
A
L
E
--------
S
T
------
L
A
-
A
--------
I
-
T
----------------------------------------------------------------------------------------------------