@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu40780: (2016-08-08 )
MKCNKMNRVQLKEGSVSMTL
Atome Classification :
(20 SA)
--------------------------------------------------------.......-..10-....---...---..20-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------MKCNKM
N
-
R
V
Q
--LKEG---SVS---MTL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
69.16
25%
-116
- C22 -
2E74
3
PETN_MASLA
H:
[1-29]
--------------------------------------------------------
M
E
I
D
V
L
G
-
W
V
A
--
L
L
V
V
F
T
W
S
I
A
---
M
V
V
W
G
R
NGL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
68.89
25%
-50
- C19 -
1B8W
-
DLP1_ORNAN
A:
[1-42]
--------------------------------------------------FVQHRP
R
D
C
E
S
I
N
-
G
V
C
--
R
H
K
D
---
T
V
N
CRE
I
F
L
ADCYNDG
Q
K
C
C
RK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
67.74
30%
14
- C21 -
1IKP
4
TOXA_PSEAE
A:
[2-606]
-------------------------------------------------EEAFDLW
N
E
C
A
K
A
C
-
V
L
D
--
L
K
D
G
---
V
R
S
---
S
R
M
S
V
D
P
A
I
A
D
TN
G
Q
G
V
L
H
Y
S
M
V
L
E
GGND
A
L
K
L
A
IDNA
L
S
I
T
S
DGL
T
I
R
L
E
G
G
VEPNKPV
R
Y
S
Y
T
R
QAR
G
S
W
S
L
N
W
L
V
P
I
G
HEKPS
N
I
K
V
F
I
H
E
L
N
AGNQLSHMS
P
I
Y
T
I
E
M
G
D
E
L
L
A
K
L
A
R
D
A
T
F
F
V
R
A
H
ESNEM
Q
P
T
L
A
I
S
H
A
G
V
S
V
V
M
A
QKRW
S
E
W
A
S
GKVLCLLDQLDG
V
Y
N
Y
L
A
QQRCNLD
D
T
W
E
G
K
I
Y
R
V
LAGNPAKHDLDIKPT
V
I
S
H
R
L
H
F
PEGG
S
L
A
A
L
T
A
H
Q
A
C
HLPLETFTRH
R
Q
P
R
GA
E
Q
L
E
Q
C
G
Y
P
V
Q
R
L
V
A
L
Y
L
A
A
RLSWNQ
V
D
Q
V
I
R
N
A
L
A
S
PGSGG
D
L
G
E
A
I
R
E
Q
P
E
Q
A
R
L
A
L
T
L
A
A
A
E
S
E
R
F
V
R
QGTGND
E
A
G
A
A
N
A
D
V
V
S
L
TCPVAA
G
E
C
A
G
P
ADSGD
A
L
L
E
R
N
Y
PTGAEFLGDG
G
D
V
S
F
S
TRGTQNWT
V
E
R
L
L
Q
A
H
R
Q
L
E
E
R
GYVFV
G
Y
H
G
T
F
L
E
A
A
Q
S
I
V
FG
G
V
R
A
R
S
Q
DLDAIWR
G
F
Y
I
A
GD
P
A
L
A
Y
G
Y
AQDQEPDARG
R
I
R
N
G
A
L
L
R
V
Y
V
PRSSLPG
F
Y
R
T
SLTLAAPE
A
A
G
E
V
E
R
L
I
GHPLPLRL
D
A
I
T
G
P
EEEG
G
R
L
E
T
I
L
G
W
P
L
A
E
R
T
V
V
I
P
S
A
I
P
T
D
PRNVGGDLDPSSIP
D
K
E
Q
A
I
SALPDYASQPGK
2
Fugue
57.77
25%
59
- C- -
4IL7
-
?
A:
[138-222]
-------------------------E
N
Y
L
I
Y
S
G
F
G
TSLP
Q
T
Y
T
I
P
A
N
G
Y
L
I
I
S
I
T
N
T
S
T
G
N
I
G
-
Q
I
T
--
L
T
I
G
---
S
T
T
---
M
T
F
N
L
Q
T
G
E
N
K
I
P
V
I
A
GTQIT
N
M
T
L
T
S
S
S
A
I
L
I
Y
E
EV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
56.71
30%
124
- C18 -
5DZN
-
TIMD4_HUMAN
A:
[-1-112]
V
T
S
E
T
V
V
T
E
V
L
G
H
R
V
T
L
P
C
L
Y
SSWSHNS
N
S
M
C
W
G
K
DQCPYSGCKEAL
I
R
T
D
GMRVT
S
R
K
S
A
K
Y
-
R
L
Q
GT
I
P
R
G
---
D
V
S
---
L
T
I
L
NPSESD
S
G
V
Y
C
C
R
I
E
V
P
G
WFN
D
V
K
I
N
V
R
L
N
L
Q
R
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
54.30
38%
-
- C10 -
1ZNF
1
A:
[5-9]
---------------------------------------------------------
K
C
G
L
C
E
-
R
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
51.76
50%
155
- C1 -
2MDG
1
A:
[5-12]
---------------------------------------------------------
K
C
N
V
C
S
-
R
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
50.51
20%
-101
- C15 -
1YSH
-
RL37A_ORYSJ
D:
[38-52]
---------------------------------------------------------
F
C
E
F
C
G
-
K
F
A
--
V
K
R
K
---
A
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
49.78
20%
-50
* C23 *
2N9C
-
?
A:
[1-20]
--------------------------------------------------------
M
T
E
Y
K
L
V
-
V
V
G
--
A
G
G
V
---
G
K
S
---
H
V
W
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
46.73
15%
69
- C22 -
1G2Y
-
HNF1A_MOUSE
B:
[1-30]
----------------------------------------------------MVSK
L
S
Q
L
Q
T
E
M
L
A
A
--
L
L
E
S
---
G
L
S
---
K
E
A
LIQAL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
46.45
22%
-72
- C3 -
3MHS
1
SGF73_YEAST (first)
E:
[78-86]
----------------------------------------------------------
C
E
K
C
G
-
K
P
L
--
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
45.32
14%
-247
- C12 -
1KLR
1
A:
[5-11]
----------------------------------------------------------
C
Q
Y
C
E
-
F
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
44.57
15%
-
- C20 -
1UHE
1
?
B:
[1-24]
----------------------------------------------------M
T
F
E
M
L
Y
S
K
I
H
-
R
A
T
--
I
T
D
A
---
N
L
N
---
Y
I
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
44.52
15%
132
* C22 *
1G2Y
-
HNF1A_MOUSE
D:
[1-30]
----------------------------------------------------MVSK
L
S
Q
L
Q
T
E
M
L
A
A
--
L
L
E
S
---
G
L
S
---
K
E
A
LIQAL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
40.61
23%
-22
* C24 *
3O9X
1
MQSA_ECOLI
A:
[3-15]
--------------------------------------------------------
M
K
C
P
V
C
H
-
Q
G
E
--
M
V
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
39.53
25%
-7
- C24 -
1DXG
1
DESR_DESGI
A:
[7-18]
--------------------------------------------------------
Y
K
C
E
L
C
G
-
Q
V
V
--
K
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
38.82
25%
40
- C17 -
2I5O
1
A:
[11-18]
---------------------------------------------------------
P
C
E
K
C
G
-
S
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
38.00
31%
190
- C23 -
2BAI
1
POLG_ENMG3
A:
[18-30]
---------------------------------------------------------
E
C
P
K
C
S
-
A
L
Q
--
Y
R
N
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
37.68
30%
128
- C2 -
2ELS
1
A:
[11-20]
---------------------------------------------------------
T
C
E
Y
C
N
-
K
V
F
--
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
36.61
33%
37
- C6 -
2LO4
1
A:
[27-35]
--------------------------------------------------------
H
S
C
P
K
C
G
-
E
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------