@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv0008c: (2016-04-18 )
MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGRLAREVAAAQETLAQELTAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAAAILAGGAVAFSIVRRSSRPEPSPRPPSVEVQPRS
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.........20........30........40..----------......50------------.........60........70.....--...80.-...----....90.....----...100.......110--.......-.120.-......130..---...--..140...---------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSE
Q
V
E
TRLT-
P
R
E
R
L
T
RGLAYSAV
G
P
V
D
V
T
R
G
L
L
E
L
G
V
GLG
L
Q
----------
S
A
R
S
T
A
A
-------------
G
L
R
R
R
Y
R
E
G
R
L
A
R
E
V
A
A
A
Q
E
T
L
A
Q
E
L
--
T
A
A
Q
D
V
-
V
A
N
----
L
P
Q
A
L
Q
D
A
R
T
Q
----RRSKH
H
L
W
I
F
A
G
I
A
A
---
A
I
LAG
G
A
-
V
A
F
S
I
-
V
R
RSSRPEPSP---RPP--
S
V
E
VQPRS---------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
81.11
15%
-46
- C- -
1QGT
-
?
A:
[1-142]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
I
D
P
Y
K
E
F
G
-
A
T
V
E
L
L
S
F
L
P
S
D
F
F
P
S
---
V
R
D
L
L
D
T
A
S
A
L
Y
R
E
----------
A
L
E
S
P
E
H
-------------
C
-
S
P
H
H
T
A
L
R
Q
A
I
L
C
W
G
E
L
M
T
L
A
T
W
V
G
N
N
L
E
D
P
A
-
S
R
D
----
L
V
V
N
Y
V
N
T
N
M
G
----
L
K
I
R
Q
L
L
W
F
H
I
S
C
L
T
FG
R
E
T
V
L
E
Y
L
-
V
S
F
G
V
-
W
I
R
T
P
P
A
Y
R
P
P
---
N
A
P
--
I
L
S
T
-------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
81.01
29%
-63
- C- -
1UJ5
1
RPIA_THET2
A:
[4-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
E
S
Y
K
K
E
A
A
H
A
A
I
A
Y
V
Q
--
D
G
M
V
-
V
G
L
G
T
G
-
S
----------
T
A
R
Y
A
V
L
-------------
E
L
A
R
R
L
R
E
G
E
L
K
G
V
V
G
V
P
T
S
R
A
T
E
E
L
--
A
K
R
E
G
I
P
L
V
D
----
L
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
80.52
19%
-1
- C- -
4TQT
8
?
A:
[14-490]
A
S
K
V
I
K
G
G
T
V
I
T
AD
R
T
F
R
A
D
I
L
I
E
DGKIAAIGD
S
L
E
G
D
E
V
I
D
ASG
C
Y
V
M
PG
G
I
D
P
H
T
H
L
QMPFMGTYSSDD
F
D
T
G
T
A
A
A
L
A
G
GTT
M
V
V
D
F
V
L
P
D
SEGN
L
L
D
A
L
Q
E
W
F
Q
K
A
G
KAR
T
D
Y
S
F
H
M
A
I
TGWN
E
R
T
F
N
E
M
A
E
V
V
K
R
GINTFHFMAYKG
A
L
M
V
N
D
D
E
M
F
A
S
F
Q
R
C
A
E
L
G
A
M
P
L
V
HAEN
G
D
I
V
A
Q
L
Q
A
K
L
M
A
-
E
G
N
D
G
P
E
A
H
A
Y
S
R
--
P
P
E
V
E
G
E
A
T
N
R
A
I
M
I
A
D
Q
A
G
V
P
L
Y
V
V
HV
S
C
E
Q
S
H
E
-------------
A
I
R
R
A
R
Q
K
G
M
-----
R
V
F
G
E
P
L
I
Q
H
L
--
T
L
D
E
S
E
-
Y
H
N
----
R
D
W
D
Y
A
A
R
R
V
M
SPPF
R
D
K
L
N
Q
D
S
L
W
A
G
L
A
A
GSL
Q
C
V
A
T
D
H
-
C
A
F
T
T
-
E
Q
K
R
Y
G
I
G
N
F
T
---
K
I
P
N
G
T
G
G
L
E
E
R
M
P
V
L
W
T
R
GVRTGRLT
P
N
E
F
V
A
V
T
S
T
N
I
A
K
I
L
NIYPQKGAVVPGADAD
L
V
I
W
D
PE
T
T
K
K
ISAKTQHSSIDYNVFEG
F
E
L
K
G
LPI
M
T
L
S
RGRIAFDKGQVTAKPGD
G
R
F
I
E
R
E
P
NG
A
V
N
R
A
L
S
Q
W
K
E
I
V
A
P
R
K
V
E
R
S
A
39
Fugue
79.88
14%
-21
- C- -
3IHT
4
?
A:
[12-174]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E
Q
S
R
L
D
L
F
I
D
R
M
V
S
Q
R
A
C
L
E
H
A
I
A
Q
T
A
G
L
S
--
G
P
V
Y
E
L
G
L
G
N
G
R
T
----------
Y
H
H
L
R
Q
H
VQG
R
E
I
Y
V
F
E
RAV
A
S
H
P
D
S
T
P
P
E
A
Q
L
I
L
G
D
I
R
E
T
L
P
A
T
L
--
E
R
F
G
A
T
-
A
S
L
----
V
H
A
D
L
G
G
H
N
R
E
----
K
N
D
R
F
A
R
L
I
S
P
L
I
E
P
---
H
L
A
Q
G
G
L
M
V
S
S
D
R
M
Y
F
E
G
L
E
E
L
P
L
P
PGA
V
V
G
--
R
C
F
I
Y
R
R
G
---------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
76.99
26%
-40
- C- -
4BQL
1
?
A:
[42-124]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
S
Y
V
K
Y
G
P
I
T
L
N
E
P
K
M
V
Q
T
R
G
L
F
L
-------------
R
D
L
P
E
-------------
S
V
K
M
R
I
P
P
D
V
L
A
R
G
L
V
V
G
D
E
E
V
R
K
Y
L
--
S
S
V
R
D
V
-
Q
R
N
----
L
K
Y
P
L
K
D
G
-
V
A
----
R
R
D
D
E
E
A
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
75.37
26%
-44
- C- -
4CJ7
1
?
A:
[19-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
S
Y
V
K
Y
G
P
I
T
L
N
E
P
K
M
V
Q
T
R
G
L
F
L
-------------
R
D
L
P
E
-------------
S
V
K
M
R
I
P
P
D
V
L
A
R
G
L
V
V
G
D
E
E
V
R
K
Y
L
--
S
S
V
R
D
V
-
Q
R
N
----
L
K
Y
P
L
K
D
G
-
V
A
----
R
R
D
D
E
E
A
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
71.66
31%
4
- C- -
3J3W
-
RL20_BACSU
Q:
[12-73]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
R
K
K
V
L
K
L
A
K
G
Y
F
G
S
K
H
T
L
Y
K
----
V
A
N
Q
Q
V
-
M
K
S
----
G
N
Y
A
F
R
D
R
R
Q
K
----
K
R
D
F
R
K
L
W
I
T
R
I
N
A
A
---
A
R
M
N
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
71.57
31%
7
- C- -
3J3V
-
RL20_BACSU
Q:
[12-73]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
R
K
K
V
L
K
L
A
K
G
Y
F
G
S
K
H
T
L
Y
K
----
V
A
N
Q
Q
V
-
M
K
S
----
G
N
Y
A
F
R
D
R
R
Q
K
----
K
R
D
F
R
K
L
W
I
T
R
I
N
A
A
---
A
R
M
N
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_CBE
68.59
33%
11
- C- -
4FC7
2
DECR2_HUMAN
B:
[206-262]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
G
P
I
S
G
T
E
G
L
R
R
L
G
G
P
Q
A
S
L
----------
S
T
K
V
T
A
S
-------------
P
L
Q
R
L
G
N
K
T
E
I
A
H
S
V
L
Y
L
A
S
P
L
A
S
Y
V
--
T
G
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
68.33
39%
-26
- C- -
5ED9
-
SUN2_MOUSE
A:
[17-66]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
L
E
A
Q
L
A
S
L
R
Q
E
L
A
-
A
L
--
T
L
K
Q
N
S
-
V
A
D
E
V
G
L
L
P
Q
K
I
Q
A
A
R
A
D
----
V
E
S
Q
F
P
D
W
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_CBE
68.22
33%
10
- C- -
4FC6
2
DECR2_HUMAN
D:
[206-262]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
G
P
I
S
G
T
E
G
L
R
R
L
G
G
P
Q
A
S
L
----------
S
T
K
V
T
A
S
-------------
P
L
Q
R
L
G
N
K
T
E
I
A
H
S
V
L
Y
L
A
S
P
L
A
S
Y
V
--
T
G
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
68.22
33%
10
- C- -
4FC7
2
DECR2_HUMAN
A:
[206-262]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
G
P
I
S
G
T
E
G
L
R
R
L
G
G
P
Q
A
S
L
----------
S
T
K
V
T
A
S
-------------
P
L
Q
R
L
G
N
K
T
E
I
A
H
S
V
L
Y
L
A
S
P
L
A
S
Y
V
--
T
G
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_CBE
68.09
33%
9
- C- -
4FC7
2
DECR2_HUMAN
D:
[206-262]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
G
P
I
S
G
T
E
G
L
R
R
L
G
G
P
Q
A
S
L
----------
S
T
K
V
T
A
S
-------------
P
L
Q
R
L
G
N
K
T
E
I
A
H
S
V
L
Y
L
A
S
P
L
A
S
Y
V
--
T
G
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
68.05
33%
5
- C- -
4FC6
2
DECR2_HUMAN
C:
[206-262]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
G
P
I
S
G
T
E
G
L
R
R
L
G
G
P
Q
A
S
L
----------
S
T
K
V
T
A
S
-------------
P
L
Q
R
L
G
N
K
T
E
I
A
H
S
V
L
Y
L
A
S
P
L
A
S
Y
V
--
T
G
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_CBE
67.77
33%
8
- C- -
4FC7
2
DECR2_HUMAN
C:
[206-262]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
G
P
I
S
G
T
E
G
L
R
R
L
G
G
P
Q
A
S
L
----------
S
T
K
V
T
A
S
-------------
P
L
Q
R
L
G
N
K
T
E
I
A
H
S
V
L
Y
L
A
S
P
L
A
S
Y
V
--
T
G
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
67.65
33%
9
- C- -
4FC6
2
DECR2_HUMAN
A:
[206-262]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
G
P
I
S
G
T
E
G
L
R
R
L
G
G
P
Q
A
S
L
----------
S
T
K
V
T
A
S
-------------
P
L
Q
R
L
G
N
K
T
E
I
A
H
S
V
L
Y
L
A
S
P
L
A
S
Y
V
--
T
G
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
67.55
41%
-82
- C- -
3NF2
5
?
A:
[92-125]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
D
D
L
M
D
G
D
E
Q
----
R
R
H
R
D
T
V
W
K
V
H
G
P
A
Q
---
A
I
L
V
G
D
A
-
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
66.86
33%
3
- C- -
4FC6
2
DECR2_HUMAN
B:
[206-262]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
G
P
I
S
G
T
E
G
L
R
R
L
G
G
P
Q
A
S
L
----------
S
T
K
V
T
A
S
-------------
P
L
Q
R
L
G
N
K
T
E
I
A
H
S
V
L
Y
L
A
S
P
L
A
S
Y
V
--
T
G
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
66.74
29%
1
- C- -
4U6P
2
POLK_HUMAN
A:
[396-455]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
I
S
L
G
L
G
----------
S
T
H
L
T
R
D
-------------
G
E
R
K
S
M
S
V
E
R
T
F
S
E
I
N
K
A
E
E
----
Q
Y
--
S
L
C
Q
E
L
-
C
S
E
----
L
A
Q
D
L
Q
K
E
R
L
K
----
G
R
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
66.36
29%
1
- C- -
2W7O
2
POLK_HUMAN
A:
[378-437]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
I
S
L
G
L
G
----------
S
T
H
L
T
R
D
-------------
G
E
R
K
S
M
S
V
E
R
T
F
S
E
I
N
K
A
E
E
----
Q
Y
--
S
L
C
Q
E
L
-
C
S
E
----
L
A
Q
D
L
Q
K
E
R
L
K
----
G
R
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------