@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv0020c: (2016-04-18 )
MGSQKRLVQRVERKLEQTVGDAFARIFGGSIVPQEVEALLRREAADGIQSLQGNRLLAPNEYIITLGVHDFEKLGADPELKSTGFARDLADYIQEQGWQTYGDVVVRFEQSSNLHTGQFRARGTVNPDVETHPPVIDCARPQSNHAFGAEPGVAPMSDNSSYRGGQGQGRPDEYYDDRYARPQEDPRGGPDPQGGSDPRGGYPPETGGYPPQPGYPRPRHPDQGDYPEQIGYPDQGGYPEQRGYPEQRGYPDQRGYQDQGRGYPDQGQGGYPPPYEQRPPVSPGPAAGYGAPGYDQGYRQSGGYGPSPGGGQPGYGGYGEYGRGPARHEEGSYVPSGPPGPPEQRPAYPDQGGYDQGYQQGATTYGRQDYGGGADYTRYTESPRVPGYAPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGTSVTLQLDDGSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNAPVQEWQLADGDVIRLGHSEIIVRMH
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440..--.-------....450...-------....-460..--.....470.......480--..--.....490.......500-...-----------.---.-...510.......520.....------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MG
S
Q
K
R
L
V
Q
R
V
E
R
K
L
E
Q
T
V
G
D
A
F
A
R
I
FGGSI
V
P
Q
E
V
E
A
L
L
R
R
E
A
A
D
G
I
Q
S
LQG
N
R
LLAPN
E
Y
I
I
T
LGV
H
D
F
E
K
LGADPELKSTG
F
A
R
D
L
A
D
Y
I
Q
E
QG
W
Q
T
Y
G
D
V
V
V
R
F
EQSSNLHT
G
Q
F
R
ARGTVNPDVETHPP
V
I
DCARPQSNHAFGAEPGVAPMSDNSSYRGGQGQGRPDEYYDDRYARPQEDPRGGPDPQGGSDPRGGYPPETGGYPPQPGYPRPRHPDQGDYPEQIGYPDQGGYPEQRGYPEQRGYPDQRGYQDQGRGYPDQGQGGYPPPYEQRPPVSPGPAAGYGAPGYDQGYRQSGGYGPSPGGGQPGYGGYGEYGRGPARHEEGSYVPSGPPGPPEQRPAYPDQGGY
D
Q
G
Y
QQG
A
T
TYGRQDYGGGADYTRYTESPRVPGYAPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAG
T
S
V
T
L
Q
L
DDGS--G-------
R
T
Y
Q
LREGSN-------IIGR-GQDA
Q
--
F
RLPDTGVS
R
R
H
L
E
I
R
WD--G
Q
--
V
A
L
L
A
DLNSTNGTTVNN--APV-----------
Q
---
E
-
W
QLADG
D
V
I
R
LGH
S
E
I
I
V
RMH------------
4
PsiBlast_PDB
85.69
100%
-126
- C1 -
3PO8
1
A:
[3-97]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
S
V
T
L
Q
L
D
D
G
S
--
G
-------
R
T
Y
Q
L
R
E
G
S
N
-------
I
I
G
R
-
G
Q
D
A
Q
--
F
R
L
P
D
T
G
V
S
R
R
H
L
E
I
R
W
D
--
G
Q
--
V
A
L
L
A
D
L
N
S
T
N
G
T
T
V
N
N
--
A
P
V
-----------
Q
---
E
-
W
Q
L
A
D
G
D
V
I
R
L
G
H
S
E
I
I
V
R
M
H
------------
5
PsiBlast_PDB
84.37
100%
-122
- C1 -
3POA
2
A:
[4-97]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
V
T
L
Q
L
D
D
G
S
--
G
-------
R
T
Y
Q
L
R
E
G
S
N
-------
I
I
G
R
-
G
Q
D
A
Q
--
F
R
L
P
D
T
G
V
S
R
R
H
L
E
I
R
W
D
--
G
Q
--
V
A
L
L
A
D
L
N
S
T
N
G
T
T
V
N
N
--
A
P
V
-----------
Q
---
E
-
W
Q
L
A
D
G
D
V
I
R
L
G
H
S
E
I
I
V
R
M
H
------------
38
HHSearch
84.33
100%
-126
- C1 -
3PO8
1
A:
[4-96]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
V
T
L
Q
L
D
D
G
S
--
G
-------
R
T
Y
Q
L
R
E
G
S
N
-------
I
I
G
R
-
G
Q
D
A
Q
--
F
R
L
P
D
T
G
V
S
R
R
H
L
E
I
R
W
D
--
G
Q
--
V
A
L
L
A
D
L
N
S
T
N
G
T
T
V
N
N
--
A
P
V
-----------
Q
---
E
-
W
Q
L
A
D
G
D
V
I
R
L
G
H
S
E
I
I
V
R
M
-------------
34
HHSearch
81.13
100%
-115
- C1 -
3OUN
-
A:
[67-157]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
T
L
Q
L
D
D
G
S
--
G
-------
R
T
Y
Q
L
R
E
G
S
N
-------
I
I
G
R
-
G
Q
D
A
Q
--
F
R
L
P
D
T
G
V
S
R
R
H
L
E
I
R
W
D
--
G
Q
--
V
A
L
L
A
D
L
N
S
T
N
G
T
T
V
N
N
--
A
P
V
-----------
Q
---
E
-
W
Q
L
A
D
G
D
V
I
R
L
G
H
S
E
I
I
V
R
--------------
2
PsiBlast_PDB
80.82
98%
-115
- C1 -
3OUN
-
A:
[67-157]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
T
L
Q
L
D
D
G
S
--
G
-------
R
T
Y
Q
L
R
E
G
S
N
-------
I
I
G
R
-
G
Q
D
A
Q
--
F
R
L
P
D
T
G
V
S
R
R
H
L
E
I
R
W
D
--
G
Q
--
V
A
L
L
A
D
L
N
S
T
N
G
T
T
V
N
N
--
A
P
V
-----------
Q
---
E
-
W
Q
L
A
D
G
D
V
I
R
L
G
H
S
E
I
I
V
R
--------------
53
Fugue
79.00
100%
-85
* C2 *
2LC0
-
FHAA_MYCTU
A:
[1-132]
M
G
S
Q
K
R
L
V
Q
R
V
E
R
K
L
E
Q
T
V
G
D
A
F
A
R
I
F
G
G
S
I
V
P
Q
E
V
E
A
L
L
R
R
E
A
A
D
G
I
Q
S
L
Q
G
N
R
L
L
A
P
N
E
Y
I
I
T
L
G
V
H
D
F
E
K
L
G
A
D
P
E
L
K
S
T
G
F
A
R
D
L
A
D
Y
I
Q
E
Q
G
W
Q
T
Y
G
D
V
V
V
R
F
E
Q
S
S
N
L
H
T
G
Q
F
R
A
R
G
T
V
N
P
D
V
E
T
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
78.95
100%
-85
- C2 -
2LC0
-
FHAA_MYCTU
A:
[1-132]
M
G
S
Q
K
R
L
V
Q
R
V
E
R
K
L
E
Q
T
V
G
D
A
F
A
R
I
F
G
G
S
I
V
P
Q
E
V
E
A
L
L
R
R
E
A
A
D
G
I
Q
S
L
Q
G
N
R
L
L
A
P
N
E
Y
I
I
T
L
G
V
H
D
F
E
K
L
G
A
D
P
E
L
K
S
T
G
F
A
R
D
L
A
D
Y
I
Q
E
Q
G
W
Q
T
Y
G
D
V
V
V
R
F
E
Q
S
S
N
L
H
T
G
Q
F
R
A
R
G
T
V
N
P
D
V
E
T
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
78.61
100%
-86
- C2 -
2LC0
-
FHAA_MYCTU
A:
[1-131]
M
G
S
Q
K
R
L
V
Q
R
V
E
R
K
L
E
Q
T
V
G
D
A
F
A
R
I
F
G
G
S
I
V
P
Q
E
V
E
A
L
L
R
R
E
A
A
D
G
I
Q
S
L
Q
G
N
R
L
L
A
P
N
E
Y
I
I
T
L
G
V
H
D
F
E
K
L
G
A
D
P
E
L
K
S
T
G
F
A
R
D
L
A
D
Y
I
Q
E
Q
G
W
Q
T
Y
G
D
V
V
V
R
F
E
Q
S
S
N
L
H
T
G
Q
F
R
A
R
G
T
V
N
P
D
V
E
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
77.29
99%
-96
- C1 -
2LC1
-
A:
[1-100]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
H
G
S
A
G
T
S
V
T
L
Q
L
D
D
G
S
--
G
-------
R
T
Y
Q
L
R
E
G
S
N
-------
I
I
G
R
-
G
Q
D
A
Q
--
F
R
L
P
D
T
G
V
S
R
R
H
L
E
I
R
W
D
--
G
Q
--
V
A
L
L
A
D
L
N
S
T
N
G
T
T
V
N
N
--
A
P
V
-----------
Q
---
E
-
W
Q
L
A
D
G
D
V
I
R
L
G
H
S
E
I
I
V
R
M
H
------------
39
HHSearch
59.68
31%
-76
* C1 *
2XT9
-
?
B:
[9-104]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
S
A
L
L
V
V
K
R
G
P
N
A
--
G
-------
S
R
F
L
L
D
Q
P
T
T
-------
S
A
G
R
-
H
P
D
S
D
--
I
F
L
D
D
V
T
V
S
R
R
H
A
E
F
R
L
E
--
G
G
--
E
F
Q
V
V
D
V
G
S
L
N
G
T
Y
V
N
R
--
E
P
V
-----------
D
---
S
-
A
V
L
A
N
G
D
E
V
Q
I
G
K
F
R
L
V
F
L
T
-------------
9
PsiBlast_PDB
59.03
31%
-71
- C1 -
2FEZ
-
EMBR_MYCTU
A:
[270-380]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
G
T
V
T
V
L
D
Q
R
T
M
A
S
G
Q
Q
A
V
A
Y
L
H
D
I
A
S
--
G
-------
R
G
Y
P
L
Q
A
A
A
T
-------
R
I
G
R
-
L
H
D
N
D
--
I
V
L
D
S
A
N
V
S
R
H
H
A
V
I
V
D
T
--
G
T
--
N
Y
V
I
N
D
L
R
S
S
N
G
V
H
V
Q
H
--
E
R
I
-----------
R
---
S
A
V
T
L
N
D
G
D
H
I
R
I
C
D
H
E
F
T
F
Q
I
-------------
10
PsiBlast_PDB
58.80
31%
-74
- C1 -
2FF4
1
EMBR_MYCTU
A:
[270-380]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
G
T
V
T
V
L
D
Q
R
T
M
A
S
G
Q
Q
A
V
A
Y
L
H
D
I
A
S
--
G
-------
R
G
Y
P
L
Q
A
A
A
T
-------
R
I
G
R
-
L
H
D
N
D
--
I
V
L
D
S
A
N
V
S
R
H
H
A
V
I
V
D
T
--
G
T
--
N
Y
V
I
N
D
L
R
S
S
N
G
V
H
V
Q
H
--
E
R
I
-----------
R
---
S
A
V
T
L
N
D
G
D
H
I
R
I
C
D
H
E
F
T
F
Q
I
-------------
62
Fugue
58.42
27%
-88
- C1 -
1MZK
-
P2C70_ARATH
A:
[177-298]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
S
S
W
L
F
L
E
V
I
A
G
P
--
A
-------
I
G
L
Q
H
A
V
N
S
T
SSSKLP
V
K
L
G
R
-
V
S
P
S
D
--
L
A
L
K
D
S
E
V
S
G
K
H
A
Q
I
T
W
N
--
S
T
KF
K
W
E
L
V
D
M
G
S
L
N
G
T
L
V
N
S
--
H
S
I
SHPDLGSRKWG
N
---
P
-
V
E
L
A
S
D
D
I
I
T
L
G
T
T
T
K
V
Y
V
R
I
S
S
Q
N
E-------
21
PsiBlast_CBE
57.55
31%
-76
- C1 -
2FF4
2
EMBR_MYCTU
B:
[270-380]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
G
T
V
T
V
L
D
Q
R
T
M
A
S
G
Q
Q
A
V
A
Y
L
H
D
I
A
S
--
G
-------
R
G
Y
P
L
Q
A
A
A
T
-------
R
I
G
R
-
L
H
D
N
D
--
I
V
L
D
S
A
N
V
S
R
H
H
A
V
I
V
D
T
--
G
T
--
N
Y
V
I
N
D
L
R
S
S
N
G
V
H
V
Q
H
--
E
R
I
-----------
R
---
S
A
V
T
L
N
D
G
D
H
I
R
I
C
D
H
E
F
T
F
Q
I
-------------
54
Fugue
56.90
27%
-95
- C1 -
1R21
-
KI67_HUMAN
A:
[1-100]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
W
P
T
R
R
L
V
T
I
K
R
S
G
V
D
--
G
-------
P
H
F
P
L
S
L
S
T
C
-------
L
F
G
R
-
G
I
E
C
D
--
I
R
I
Q
L
P
V
V
S
K
Q
H
C
K
I
E
I
H
--
E
Q
--
E
A
I
L
H
N
F
S
S
T
N
P
T
Q
V
N
G
--
S
V
I
-----------
D
---
E
P
V
R
L
K
H
G
D
V
I
T
I
I
D
R
S
F
R
Y
E
N
E
------------
55
Fugue
55.67
17%
-93
- C1 -
1WLN
-
A:
[1-120]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
G
S
S
G
P
E
K
L
P
Y
L
V
E
L
S
P
D
--
G
SDSRDKP
K
L
Y
R
L
Q
L
S
V
T
-------
E
V
G
T
-
E
K
F
D
D
N
S
I
Q
L
F
G
P
G
I
Q
P
H
H
C
D
L
T
N
M
--
D
G
--
V
V
T
V
T
P
R
S
M
D
A
E
T
Y
V
D
G
--
Q
R
I
-----------
S
---
E
T
T
M
L
Q
S
G
M
R
L
Q
F
G
T
S
H
V
F
K
F
V
D
PSGPSSG-----
40
HHSearch
55.14
30%
-109
- C1 -
1R21
-
KI67_HUMAN
A:
[15-99]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
--
G
-------
P
H
F
P
L
S
L
S
T
C
-------
L
F
G
R
-
G
I
E
C
D
--
I
R
I
Q
L
P
V
V
S
K
Q
H
C
K
I
E
I
H
--
E
Q
--
E
A
I
L
H
N
F
S
S
T
N
P
T
Q
V
N
G
--
S
V
I
-----------
D
---
E
P
V
R
L
K
H
G
D
V
I
T
I
I
D
R
S
F
R
Y
E
N
-------------
13
PsiBlast_PDB
54.64
30%
-77
- C1 -
4QCJ
-
ODHI_CORGL
A:
[56-136]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
--
G
-------
A
R
F
L
L
D
Q
P
T
T
-------
T
A
G
R
-
H
P
E
S
D
--
I
F
L
D
D
V
T
V
S
R
R
H
A
E
F
R
I
N
--
E
G
--
E
F
E
V
V
D
V
G
S
L
N
G
T
Y
V
N
R
--
E
P
R
-----------
N
---
A
-
Q
V
M
Q
T
G
D
E
I
Q
I
G
K
F
R
L
V
----------------
57
Fugue
54.14
19%
-89
- C1 -
4A0E
-
?
A:
[1-108]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
W
V
C
R
F
Y
Q
G
K
HR
G
-------
V
E
V
E
L
P
H
G
R
C
-------
V
F
G
S
D
P
L
Q
S
D
--
I
V
L
S
D
S
E
I
A
P
V
H
L
V
L
M
V
D
--
E
E
--
G
I
R
L
T
D
S
A
--
E
P
L
L
Q
E
G
--
L
P
V
-----------
P
---
L
G
T
L
L
R
A
G
S
C
L
E
V
G
F
L
L
W
T
F
V
A
V
GQPLPE
T
L
Q
V
P
T
46
HHSearch
53.35
25%
-91
- C1 -
3VA4
-
MDC1_MOUSE
A:
[36-125]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
E
-------
R
D
F
P
L
Y
L
G
K
N
-------
V
V
G
R
-
S
P
D
C
S
--
V
A
L
P
F
P
S
I
S
K
Q
H
A
V
I
E
I
S
AW
N
K
--
A
P
I
L
Q
D
C
G
S
L
N
G
T
Q
I
V
K
P
P
R
V
L
-----------
P
P
G
V
S
-
H
R
L
R
D
Q
E
L
I
L
F
A
D
F
P
C
Q
Y
H
R
-------------