@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv0071: (2016-04-19 )
MSSITVSVDPVDPVDPVDPVDPVDAVVAAGSDGLTVARIESEIGALEFLNELRTELKSGQFRPQPVRERKIPKPGGLGKVRRLGIPTVADRVVQAALKLVLEPIFETDFEPVSYGFRPARRAHDTIAEIHLFGTQEYRWVLDADIKACFDRIDHADLMDRVRHRIKDKRVLRLVNWQRIRHRWNWTDVRRWLTDPTGRWHPISADGITLFNPAAVPIRRYRYRGNTIPTPWTQAV
Atome Classification :
(20 SA)
.........10.....----------------...20........30...--------------------------------....-.40--........-------.50........60........70..-----......80----....--....90.--...-....100.....---.---.-110.......120------..---......130..------.....140.......150.-----..--....---160-.---.---.----..-----.-----..-.-170..-.----....180--.-.-.......190......-.200...-....210..-.....220.......230...---------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
S
S
I
T
V
SVDPVDPVDP----------------VDPVD
P
V
D
A
V
V
AAGSD
G
L
--------------------------------
T
V
A
R
-
I
E
---
S
E
I
G
A
L
E
F
-------
L
N
E
L
R
T
E
L
KSGQFRPQP
V
R
ERKIPK-----PGGLG
K
V
R----RLGI--
P
T
V
A
D
R
V
--
V
Q
A
-
A
L
K
L
V
L
E
P
I
F
ET---D---F-EPVSYGFRP
A
R
-
R
------AH---D
T
I
A
E
I
H
L
F
GT------Q
E
Y
R
W
V
L
D
A
D
I
K
A
C
F
D
RI
D
-----
H
A
--
D
L
M
D
---
R
---
V
---
R
---
H
----
R
I
-----
K
-----
D
K
-
R
-
V
L
R
L
V
-
N
----
W
Q
R
I
R
----
H
-R-W
N
W
T
D
V
R
R
W
LTDPTGR-WHPISAD-
G
I
T
L
FNPAA-V
P
I
R
R
Y
RYRGNTIPTPWTQAV---------------------------------
24
Fugue
80.40
11%
-34
- C3 -
3DAD
-
FHOD1_HUMAN
A:
[14-339]
-
S
V
V
T
V
R
V
Q
Y
L
E
D
T
D
P
FASANFPEPRR
A
P
T
C
S
L
D
G
A
L
P
L
G
A
Q
I
P
A
V
H
R
L
L
GAPLKLED
S
A
L
Q
V
SPSGYYLDTELSLEEQREM
G
F
Y
E
-
E
I
---
S
K
G
R
K
P
T
L
-------
I
L
R
T
Q
L
S
V
R
V
N
A
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S
G
P
E
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-----
R
R
S
L
F
S
L
K
----
Q
I
F
Q
E
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P
E
F
--
V
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C
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I
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A
A
A
---
D
---
H
-
N
Y
Q
S
Y
I
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A
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-
Q
L
M
LF
V
D
G
M
---
L
G
V
V
A
H
S
D
T
I
Q
------
W
L
Y
T
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A
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T
A
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K
-----
L
L
--
L
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F
V
---
E
---
Y
---
S
---
E
----
N
N
-----
A
-----
P
L
-
F
-
I
R
A
V
N
-
S
----
V
A
S
T
T
----
G
-
A
-
P
P
W
A
N
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E
K
N
G
A
-
D
P
E
L
L
V
Y
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T
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T
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A
A
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M
E
A
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Q
R
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L
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TAGTD
V
D
L
R
T
Q
L
V
L
Y
E
N
A
L
K
L
E
D
G
3
PsiBlast_PDB
74.78
31%
-16
- C4 -
1ZXX
1
PFKA_LACDE
A:
[190-267]
-------
V
I
P
E
R
P
Y
D
V
----------------
E
E
I
A
N
R
L
K
Q
A
Q
E
S
G
K
D
H
G
--------------------------------
L
V
V
V
-
A
E
---
G
V
M
T
A
D
Q
F
-------
M
A
E
L
K
---
K
Y
G
D
F
---
D
V
R
A
N
V
-----------
L
G
H
M
Q
----
R
G
G
T
--
P
T
V
S
D
R
V
--
L
A
S
-
K
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
62.01
10%
-43
* C4 *
1AEP
-
APL3_LOCMI
A:
[6-158]
--------------
N
I
----------------
A
E
A
V
Q
Q
L
N
H
T
I
V
N
A
A
H
E
L
--------------------------------
H
E
T
L
G
L
P
---
T
P
D
E
A
L
N
L
-------
L
T
E
Q
A
N
A
F
K
T
K
I
A
E
V
T
T
S
L
K
Q
E
A
E
K
-----
H
Q
G
---
S
V
----
A
E
Q
L
--
N
A
F
A
R
N
L
--
N
N
S
-
I
H
D
A
A
T
S
L
N
L
Q
D
---
Q
---
L
-
N
S
L
Q
S
A
L
T
N
V
G
-
H
------
Q
W
---
Q
D
I
A
T
K
T
Q
A
S
A
------
Q
E
A
W
A
P
V
Q
S
A
L
Q
E
A
A
E
K
T
K
-----
E
A
A
A
N
L
Q
N
---
S
---
I
---
Q
---
S
----
A
V
-----
Q
-----
K
---------------------------------------------------------------------------------------------------------------------
8
HHSearch
57.35
13%
-36
- C4 -
3UQS
-
?
A:
[180-320]
----------------------------------------------------------------------------------------------------------------------------------------------
K
K
R
----
L
L
W
G
--
S
D
L
G
T
M
I
--
R
A
A
-
R
A
F
G
P
F
C
D
A
L
K
E
T
C
-
I
---
F
-
N
P
I
R
V
G
M
S
M
N
E
-
D
------
G
P
---
F
I
F
A
R
H
----
A
-------
N
F
R
Y
H
M
D
A
D
Y
T
R
W
D
S
T
Q
Q
-----
R
A
--
I
L
K
R
---
A
G
D
I
M
---
V
---
R
----
L
S
-----
P
-----
E
P
-
D
L
A
R
V
V
M
-
D
----
D
L
L
A
P
----
S
L
L
D
V
G
D
Y
K
I
V
V
E
E
G
L
P
S
G
C
P
C
T
T
Q
-
L
N
-
S
L
--------------------------------------------------------------
21
Fugue
56.59
12%
-29
- C4 -
2EBO
1
VGP_EBOZM
A:
[1-74]
------------------------------------------------
G
L
--------------------------------
R
-
Q
L
-
A
N
---
E
T
T
Q
A
L
Q
L
-------
F
L
R
A
T
T
E
L
R
T
F
S
I
L
N
R
K
A
I
D
F
L
L
Q
R
-----
W
G
G
T
C
H
I
L
GPDC
A
I
E
P
--
H
D
W
T
K
N
I
--
T
D
K
-
I
D
Q
I
I
H
D
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
55.47
12%
-31
- C4 -
2CKW
-
A:
[180-320]
----------------------------------------------------------------------------------------------------------------------------------------------
K
R
R
----
L
L
W
G
--
C
D
A
A
T
T
L
--
I
A
T
-
A
A
F
K
A
V
A
T
R
L
Q
V
---
V
TP-
M
-
T
P
V
A
V
G
I
N
M
D
S
-
V
------------
Q
M
Q
V
M
N
D
S
L
--------
K
G
G
V
L
Y
C
L
D
Y
S
K
W
D
S
T
Q
N
-----
P
A
--
V
T
A
A
S
L
A
I
---
L
---
E
---
R
----
F
A
-----
E
-----
P
H
P
I
-
V
S
C
A
I
-
E
----
A
L
S
S
P
----
A
E
G
Y
V
N
D
I
K
F
V
T
R
G
G
L
P
S
G
M
P
F
T
S
V
-
V
N
-
S
I
--------------------------------------------------------------
11
HHSearch
55.42
13%
-25
- C4 -
4WYW
4
?
A:
[177-315]
----------------------------------------------------------------------------------------------------------------------------------------------
K
T
R
----
I
V
D
V
--
L
P
V
E
H
I
L
--
Y
T
R
-
M
M
I
G
R
F
C
A
Q
M
H
S
---
N
NGP
Q
-
I
G
S
A
V
G
C
N
P
D
V
-
D
------
W
Q
---
R
F
G
T
H
F
----
A
------
Q
-
Y
R
N
V
W
D
V
D
Y
S
A
F
D
A
N
H
C
-----
S
D
--
A
M
N
I
---
M
---
F
---
E
---
E
----
V
F
RTEFG
F
-----
H
P
-
N
-
A
E
W
I
L
-
K
----
T
L
V
N
T
----
E
H
A
-
Y
E
N
K
R
I
T
V
E
G
G
M
P
S
G
C
S
A
T
S
-
I
I
N
-
T
I
--
L
N
N
I
Y
-
V
-----------------------------------------------------
7
HHSearch
54.89
15%
-39
- C4 -
4NYZ
2
?
A:
[172-304]
----------------------------------------------------------------------------------------------------------------------------------------------
K
T
R
----
I
V
D
V
--
P
P
F
E
H
C
I
--
L
G
R
-
Q
L
L
G
K
F
A
S
K
F
Q
T
---
Q
PG-
L
E
L
G
S
A
I
G
C
D
P
D
V
-
H
-------------
W
T
A
F
G
V
A
M
Q
-------
G
F
E
R
V
Y
D
V
D
Y
S
N
F
D
S
T
H
S
-----
V
A
--
V
F
R
L
---
L
---
A
---
E
---
E
----
F
F
-----
S
EENGF
D
P
-
L
-
V
K
D
Y
L
-
E
----
S
L
A
I
S
----
K
H
A
-
Y
E
E
K
R
Y
L
I
T
G
G
L
P
S
G
C
A
A
T
S
M
L
-
N
-
T
I
--------------------------------------------------------------
14
HHSearch
53.95
16%
-10
- C4 -
1KHV
1
POLG_RHDVF
A:
[186-319]
----------------------------------------------------------------------------------------------------------------------------------------------
K
K
R
----
L
L
W
G
--
C
D
V
G
V
A
V
--
C
A
A
-
A
V
F
H
N
I
C
Y
K
L
K
M
V
A-
R
---
F
-
G
P
I
A
V
G
V
D
M
T
S
R
D
------
V
D
---
V
I
I
----
N
N
L
T
------
S
K
A
S
D
F
L
C
L
D
Y
S
K
W
-
D
S
T
M
-----
S
P
--
C
V
V
R
---
L
---
A
---
I
---
D
----
I
L
-----
A
D
CCE-
Q
T
-
E
L
T
K
S
V
V
-
L
----
T
L
K
S
H
----
P
M
T
I
L
D
A
M
I
V
Q
T
K
R
G
L
P
S
G
M
P
F
T
S
V
-
I
N
-
S
I
--------------------------------------------------------------
6
HHSearch
53.59
16%
-28
- C4 -
3BSO
7
?
A:
[180-316]
----------------------------------------------------------------------------------------------------------------------------------------------
K
K
R
----
L
L
W
G
--
S
D
L
A
T
M
I
--
R
C
A
-
R
A
F
G
G
L
M
D
E
L
K
T
---
H
CV-
T
-
L
P
I
R
V
G
M
N
M
N
E
-
D
------
G
-------
P
I
I
F
E
R
H
S
-------
R
Y
R
Y
H
Y
D
A
D
Y
S
R
W
D
S
T
Q
Q
-----
R
A
--
V
L
A
A
---
A
L
E
I
M
---
V
---
K
----
F
S
-----
S
-----
E
P
-
H
L
A
Q
V
V
A
-
E
----
D
L
L
S
P
----
S
V
V
D
V
G
D
F
T
I
S
I
N
E
G
L
P
S
G
V
P
C
T
S
Q
-
W
N
-
S
I
--------------------------------------------------------------
1
PsiBlast_PDB
53.37
29%
-48
* C5 *
2GGO
-
?
A:
[161-224]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
L
N
S
D
I
F
T
Y
L
D
K
I
S
ISERG
E
L
--
E
L
T
D
---
A
---
I
---
N
---
L
----
M
A
-----
K
-----
D
H
-
R
-
V
-
K
V
I
-
E
Y
E
G
Y
W
M
D
I
G
----
K
-
P
-
W
N
I
I
D
V
N
K
W
A
L
D
-----------------------------------------------------------------------------
2
PsiBlast_PDB
51.46
29%
-36
- C5 -
2GGQ
1
?
A:
[161-224]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
L
N
S
D
I
F
T
Y
L
D
K
I
S
ISERG
E
L
--
E
L
T
D
---
A
---
I
---
N
---
L
----
M
A
-----
K
-----
D
H
-
R
-
V
-
K
V
I
-
E
Y
E
G
Y
W
M
D
I
G
----
K
-
P
-
W
N
I
I
D
V
N
K
W
A
L
D
-----------------------------------------------------------------------------
23
Fugue
51.24
11%
-42
- C2 -
1BML
-
STRP_STREQ
C:
[12-166]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
------
V
N
---
N
S
Q
L
V
V
S
V
A
G
T
VEGTNQ
D
I
S
L
K
F
F
E
I
D
L
T
S
R
P
H
K
L
E
-----
K
A
--
D
L
L
K
---
A
---
I
---
Q
---
E
----
Q
L
-----
I
-----
A
N
-
V
-
H
S
N
D
D
-
Y
----
F
E
V
I
----------
D
F
A
S
D
A
T
I
T
D
R
N
G
K
V
-
Y
F
A
D
K
D
G
-
S
V
T
L
P
T
Q
----
P
V
Q
E
F
L
L
S
G
H
V
R
V
R
P
Y
K
E
-----------------------------------
10
HHSearch
51.12
15%
-13
- C4 -
1XR7
-
?
A:
[172-303]
----------------------------------------------------------------------------------------------------------------------------------------------
K
T
R
----
V
I
E
A
--
S
S
I
N
D
T
I
--
L
F
R
-
T
V
Y
G
N
L
F
S
K
F
H
L
N
PG
V
---
V
-
T
G
C
A
V
G
C
D
P
E
T
-
F
------
W
-------
S
K
I
P
L
M
L
--------
D
G
D
C
I
M
A
F
D
Y
T
N
Y
D
G
S
I
H
-----
P
I
--
W
F
K
A
---
L
---
G
---
M
V
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N
----
L
S
-----
F
-----
N
P
-----
T
L
I
-
N
----
R
L
C
N
S
----
K
H
I
-
F
K
S
T
Y
Y
E
V
E
G
G
V
P
S
G
C
S
G
T
S
I
F
-
N
-
S
M
--
I
N
N
I
I
-------------------------------------------------------
9
HHSearch
48.57
12%
-27
- C4 -
4WFZ
1
A:
[172-306]
----------------------------------------------------------------------------------------------------------------------------------------------
K
S
R
----
L
I
E
A
--
S
S
L
N
D
S
V
--
A
M
R
-
Q
T
F
G
N
L
Y
K
T
F
H
L
---
N
PG-
V
V
T
G
S
A
V
G
C
D
P
D
L
-
F
------
W
S
---
K
----
I
P
V
M
L
--------
D
-
G
H
L
I
A
F
D
Y
S
G
Y
D
A
S
L
S
-----
P
V
--
W
F
A
----
C
---
L
---
K
---
M
I
L
E
K
L
G
-----
Y
-----
T
H
-
K
-
E
T
N
Y
I
-
D
----
Y
L
C
N
S
----
H
H
L
-
Y
R
D
K
H
Y
F
V
R
G
G
M
P
S
G
C
S
G
T
S
I
-
F
N
-
S
M
--
I
N
N
I
I
-
I
-----------------------------------------------------
5
HHSearch
48.29
11%
-27
- C4 -
5CQG
-
?
A:
[183-319]
-----------------------------------------------------------------------------------------------------------------------------
V
L
N
I
I
P
K
-----
Q
D
---
N
F
R
----
A
I
V
S
--
I
F
P
D
S
A
R
K
P
F
F
K
-
L
L
T
S
K
I
Y
K
V
L
E
-----------
E
K
Y
K
T
---
S
G
-
S
------
L
Y
---
T
C
W
S
E
F
T
Q
K
-
T
------
Q
G
Q
I
Y
G
I
K
V
D
I
R
D
A
Y
G
N
V
K
-----
I
P
--
V
L
C
K
---
L
---
I
---
Q
---
S
----
I
P
THL--
L
-----
D
S
-
E
-
K
K
N
F
I
V
D
----
H
I
S
N
Q
----
F
V
A
-
F
R
R
K
I
Y
K
W
N
H
G
L
L
Q
G
D
P
L
S
G
C
L
C
E
-
L
---------------------------------------------------------------
4
PsiBlast_PDB
47.70
48%
29
- C1 -
3P2D
-
ARRB2_BOVIN
A:
[19-83]
---
L
T
V
Y
L
G
K
R
D
F
V
D
H
----------------
L
D
K
V
D
P
V
D
G
V
V
L
V
D
P
D
Y
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
46.72
12%
2
- C3 -
3UX4
2
UREI_HELPJ
A:
[1-195]
-------
M
L
G
L
V
L
L
Y
V
----------------
G
I
V
L
I
S
N
G
I
C
G
L
T
K
V
D
P
K
--------------------------------
S
T
A
V
-
M
N
---
F
F
V
G
G
L
S
I
-------
V
C
N
V
V
V
I
T
Y
S
A
L
H
P
T
A
P
S
----------------------------------------------------
F
Y
G
---
P
---
A
-
T
G
L
L
F
G
F
T
Y
L
Y
-
A
------
A
I
---
N
H
T
F
G
L
D
W
R
P
Y
------
S
W
Y
S
L
F
V
A
I
N
T
V
P
A
A
I
L
S
H
-----
Y
S
--
D
M
L
D
---
D
---
H
---
K
---
V
----
L
G
-----
I
-----
T
E
-
G
-
D
W
W
A
I
-
I
----
W
L
A
W
G
----
V
-
L
-
W
L
T
A
F
I
E
N
I
L
K
I
P
L
G
K
-
F
T
P
W
L
A
I
-
I
E
G
I
L
T
-
A
W
-
I
P
A
W
L
L
F
I
Q
H
W
V
------------------------------------------
20
Fugue
46.63
11%
5
* C3 *
4YAM
-
LIGE_SPHPI
A:
[3-252]
R
N
N
T
I
T
L
Y
D
L
Q
L
E
S
G
C
----------------
T
I
S
P
Y
V
W
R
T
K
Y
A
L
K
H
K
G
F
--------------------------------
D
I
D
I
-
V
P
G
G
F
T
G
I
L
E
R
T
G
GRSERVP
V
I
V
D
D
G
E
W
V
L
D
S
W
V
I
A
E
Y
L
D
E
K
Y
P
D
RPMLF
E
G
P
T
Q
K
N
L
M
---
K
F
L
D
--
N
W
L
W
S
T
A
--
V
G
P
-
W
F
R
C
Y
I
L
D
Y
H
D
L
---
S
---
L
-
P
Q
D
R
D
Y
V
R
W
S
R
-
E
------
Q
W
FLG
G
Q
R
L
E
D
V
Q
A
G
R
------
E
D
R
L
P
L
V
P
P
T
L
E
P
F
R
R
I
L
A
-----
E
T
--
K
W
L
G
---
G
---
D
---
Q
---
P
----
N
F
-----
A
-----
D
Y
-
S
-
A
L
A
V
F
-
L
----
W
T
A
S
V
----
A
-
R
-
T
P
P
L
T
E
----
D
D
P
L
R
D
-
W
L
D
R
G
F
D
L
F
D
G
L
G
R
H
P
G
M
N
P
L
F
G
L
K
L
R
E
G
D
-
P
E
P
F
V
R
Q
----------------------------------
13
HHSearch
39.71
8%
-27
- C4 -
5I62
-
?
A:
[199-366]
----------------------------------------------------------------------------------------------------------------------------------------------
K
Q
R
----
V
V
W
M
--
F
P
F
A
V
N
I
--
R
E
L
-
Q
V
Y
Q
P
L
I
L
T
F
Q
R
---
L
G--
L
-
V
P
A
W
V
S
M
E
A
----------
V
D
---
R
R
I
T
K
M
F
D
T
K
G
-------
P
R
D
V
V
V
C
T
D
F
S
K
F
D
Q
H
F
N
-----
P
T
--
C
Q
S
V
---
A
---
K
E
L
L
A
---
D
----
L
L
-----
T
-----
G
Q
-
E
-
A
V
D
W
L
-
E
----
R
V
F
P
I
KY
A
I
P
L
A
Y
N
W
G
E
I
R
Y
G
I
H
G
M
G
S
G
S
G
G
T
N
A
D
-
E
-
T
L
--
V
H
R
V
L
-
Q
-----------------------------------------------------