@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv0174: (2016-04-20 )
MLTRFIRRQLILFAIVSVVAIVVLGWYYLRIPSLVGIGQYTLKADLPASGGLYPTANVTYRGITIGKVTAVEPTDQGARVTMSIASNYKIPVDASANVHSVSAVGEQYIDLVSTGAPGKYFSSGQTITKGTVPSEIGPALDNSNRGLAALPTEKIGLLLDETAQAVGGLGPALQRLVDSTQAIVGDFKTNIGDVNDIIENSGPILDSQVNTGDQIERWARKLNNLAAQTATRDQNVRSILSQAAPTADEVNAVFSGVRDSLPQTLANLEVVFDMLKRYHAGVEQLLVFLPQGAAIAQTVLTPTPGAAQLPLAPAINYPPPCLTGFLPASEWRSPADTSPRPLPSGTYCKIPQDAQLQVRGARNIPCVDVLGKRAATPKECRSKDPYVPLGTNPWFGDPNQILTCPAPGARCDQPVKPGLVIPAPSINTGLNPAPADQVQGTPPPVSDPLQRPGSGTVQCNGQQPNPCVYTPTSGPSAVYSPASGELVGPDGVKYAVANSSTTGDDGWKEMLAPAS
Atome Classification :
(20 SA)
-.........10...------..--------...20........30..-------......40........50........60...------.....70........80........---90---------.......---.100.......110......---.120.......130.......140.......150....-------...160......--.170.......180.......190..-..-...200-.......-------..210-.--......220.......230..------.-----....240.......250.......260.......270.......280.....--..290.....--..300.---...-----...310..-....--.320.......330---.........340.......------..350------.......360.......370.......380.......390--.......400.......410.......420.......430.......440......---.450.......460.......470.......480...---....490.......500.......510...----------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-
M
L
T
R
F
I
R
R
Q
L
I
L
F
A
------
I
V
--------
S
V
V
A
I
V
V
L
G
W
Y
Y
LRIPS-------LVGI
G
Q
Y
T
L
K
ADLPASGGLYPTA
N
V
T
Y
R
G
I
T
------
I
G
K
V
T
A
VEPTDQG
A
R
V
T
M
S
IASNYK---IP---------VDASANV---
H
S
V
S
A
V
G
E
Q
Y
I
D
L
VSTGAPG---KYFSSG
Q
T
ITKGTVP
S
E
IGPALDNSNRGLAAL
P
T
E
K
I
G
-------
L
L
L
D
E
T
A
Q
A
VGG--
L
G
P
A
L
Q
R
L
V
D
S
T
Q
A
I
V
G
DFKTNIG
D
V
-
N
D
-
I
IEN---SGPILDS-------QVN
T
G
-
D
--
Q
I
E
R
W
A
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K
L
N
N
L
A
A
QTAT
R
D
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------
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-----
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R
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I
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QAAP
T
A
D
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N
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Y
H
A
G
V
E
Q
L
L
V
--FLPQ
G
A
A
I
A
Q
--
T
VLTPT---PGA-----AQLPLAPA-INYP--P
P
C
L
T
GFL
P
A
S
E-----WRSPADTSPR--PLPSG
T
Y
------CKIPQ------D
A
Q
L
Q
V
RGARNI
P
C
V
D
V
LGKRAA
T
P
K
E
CRSKDPYVPLGTN--PWFGDPN
Q
I
L
TCPAPGARCDQPVKP
G
L
V
I
PAPSINTGLNPAPADQVQGTPPPVSDP---LQRPGS
G
T
V
Q
CNGQQPNP
C
V
YTPTSGPSAVYSPASGE---LVGPDG
V
K
Y
A
VANSSTTG
D
D
G
W
K
E
MLAPAS----------------------------------------------------------------------
26
Fugue
73.22
14%
-41
- C3 -
3RKI
3
?
A:
[26-508]
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E
------------------------------------
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---------------------------------
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---
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IDT
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N
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--
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--
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---
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---
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---
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N
V
N
-----------------------------------------------------------------------------
24
Fugue
65.50
14%
-42
- C6 -
5F9H
6
DDX58_HUMAN
A:
[11-692]
-
F
K
P
R
N
Y
Q
L
E
L
A
L
P
A
MKGKN
T
I
I
C
A
P
TGCG
K
T
F
V
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I
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GATAEN
V
P
V
E
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N
N
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N
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GT
I
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SLSIFT
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T
SKQ
H
P
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G
G
S
S
G
PL
P
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D
A
K
N
-
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--
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NEN
P
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-----
E
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-
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LS
F
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RDHN
I
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------
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V
A
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P
-------
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N
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Y
T
A
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---
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---
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SS
F
E
K
R
A
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I
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C
ARQNCSHDW
G
I
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V
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Y
KT
F
E
I
P
V
I
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IES
F
V
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E
D
IATG
V
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T
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Y
SKWKDFH
F
E
K
I
P
FDPAE
27
Fugue
64.03
20%
-54
- C4 -
4FDW
19
?
A:
[21-401]
A
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A
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-
E
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K
Y
D
-------
D
G
K
Q
R
P
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-
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V
T
S
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Q
I
S
--------
G
F
S
S
S
V
P
V
D
K
-
Q
E
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I
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Q
K
---------------
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F
S
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I
---
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-------------------------------------
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---------
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---
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KL
A
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-----------
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TF--------------------------------------------------------------------
14
HHSearch
53.12
10%
0
- C8 -
4UY3
-
EZRA_STAA1
A:
[81-192]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
P
V
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K
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A
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L
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-
H
--
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E
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R
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E
------
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-----
Y
E
V
L
K
A
D
G
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
51.21
20%
-15
- C6 -
5C50
3
ATG13_HUMAN
B:
[5-189]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
L
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F
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V
G
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P
V
----
G
T
-----
I
T
L
S
C
A
Y
R
-
I
N
L
A
--
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
48.46
15%
-31
* C6 *
2J9W
-
?
A:
[120-220]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
H
M
G
-------
N
L
N
R
C
I
A
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S
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------
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F
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H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
48.15
26%
4
- C8 -
4ZAD
1
FDC1_CANDC
A:
[311-421]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Y
R
D
Q
A
I
M
P
I
S
N
P
G
-------
L
C
T
D
E
T
H
T
L
I
G
G
--
L
V
S
A
E
T
K
Y
L
I
S
Q
H
P
V
L
S
K
I
---
V
E
D
V
-
F
T
-
P
Y
E
A
---
Q
A
L
W
L
A
V
-------
K
I
N
T
H
-
E
L
V
K
L
K
T
N
A
K
E
L
S
N
L
V
G
D
F
L
F
R
S
K
ECY---
K
-----
V
C
S
I
L
H
E
I
I
L
V
G
D
D
I
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
44.04
29%
70
* C5 *
3A72
-
?
A:
[243-309]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
P
ENI
A
S
A
P
G
Q
R
L
V
V
S
S
G
T
Q
P
-------
T
S
S
P
Y
A
V
W
T
P
Y
G
G
E
N
G
T
I
I
V
S
S
G
T
Q
G
T
L
F
I
N
K
A
L
G
E
G
E
W
T
E
I
P
C
P
------------------------------------------------------------------------
9
PsiBlast_PDB
43.98
29%
67
- C5 -
3A71
-
?
A:
[243-309]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
P
ENI
A
S
A
P
G
Q
R
L
V
V
S
S
G
T
Q
P
-------
T
S
S
P
Y
A
V
W
T
P
Y
G
G
E
N
G
T
I
I
V
S
S
G
T
Q
G
T
L
F
I
N
K
A
L
G
E
G
E
W
T
E
I
P
C
P
------------------------------------------------------------------------
5
PsiBlast_PDB
42.99
33%
120
- C8 -
4BTA
-
P4HA1_HUMAN
A:
[11-63]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
F
T
S
I
G
Q
M
-
T
D
-
L
I
H
T
---
E
K
D
L
V
T
S
L
K
D
Y
I
K
A
E
E
D
K
L
-
E
--
Q
I
K
K
W
A
E
K
L
D
R
L
T
S
-
T
A
T
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
42.96
25%
15
- C8 -
3HAI
-
PACN1_HUMAN
A:
[173-247]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
E
M
N
S
K
T
E
Q
S
V
T
P
E
Q
Q
K
K
L
Q
D
K
-----
V
D
K
C
K
Q
D
V
Q
K
T
Q
E
K
Y
E
K
V
L
E
D
V
G
K
T
T
P
Q
Y
M
E
N
M
E
Q
V
F
E
Q
C
Q
Q
F
E
---
E
K
R
L
V
--
F
L
K
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
42.72
33%
108
- C8 -
4BTB
-
P4HA1_HUMAN
A:
[5-61]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
F
T
S
I
G
Q
M
-
T
D
-
L
I
H
T
---
E
K
D
L
V
T
S
L
K
D
Y
I
K
A
E
E
D
K
L
-
E
--
Q
I
K
K
W
A
E
K
L
D
R
L
T
S
-
T
A
T
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
41.93
33%
123
- C8 -
4BT9
-
P4HA1_HUMAN
A:
[5-57]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
F
T
S
I
G
Q
M
-
T
D
-
L
I
H
T
---
E
K
D
L
V
T
S
L
K
D
Y
I
K
A
E
E
D
K
L
-
E
--
Q
I
K
K
W
A
E
K
L
D
R
L
T
S
-
T
A
T
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
40.45
27%
130
- C8 -
3WMI
-
?
B:
[566-602]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
--
Q
W
D
D
W
V
D
K
M
E
N
L
N
H
D
I
L
T
T
L
H
------
T
-----
A
R
N
N
L
E
Q
S
M
I
T
F
N
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
40.15
9%
120
- C8 -
1HF9
-
ATIF1_BOVIN
A:
[1-41]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
-------
K
K
H
H
E
-
N
--
E
I
S
H
H
A
K
E
I
E
R
L
Q
K
E
I
E
R
H
K
Q
------
S
-----
I
K
K
L
K
Q
S
E
D
D
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
40.12
9%
120
- C8 -
1HF9
-
B:
[1-41]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
-------
K
K
H
H
E
-
N
--
E
I
S
H
H
A
K
E
I
E
R
L
Q
K
E
I
E
R
H
K
Q
------
S
-----
I
K
K
L
K
Q
S
E
D
D
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
39.95
33%
133
- C8 -
4BT8
-
P4HA1_HUMAN
A:
[7-66]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
G
Q
M
-
T
D
-
L
I
H
T
---
E
K
D
L
V
T
S
L
K
D
Y
I
K
A
E
E
D
K
L
-
E
--
Q
I
K
K
W
A
E
K
L
D
R
L
T
S
-
T
A
T
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
39.13
33%
154
- C8 -
2YQ8
-
P4HA1_HUMAN
A:
[7-62]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
G
Q
M
-
T
D
-
L
I
H
T
---
E
K
D
L
V
T
S
L
K
D
Y
I
K
A
E
E
D
K
L
-
E
--
Q
I
K
K
W
A
E
K
L
D
R
L
T
S
-
T
A
T
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
36.64
27%
50
- C5 -
3N2O
2
SPEA_VIBVY
A:
[547-620]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
G
A
Y
Q
E
I
L
G
D
M
H
N
L
F
G
D
T
-
H
S
-
V
V
V
N
V
G
D
Q
G
E
I
N
I
D
-------
F
I
N
E
G
-
D
--
T
V
E
D
M
M
R
Y
V
H
I
D
V
D
Q
I
R
---
K
------
N
-----
Y
H
S
L
V
S
Q
R
V
D
Q
E
E
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
34.90
12%
130
* C8 *
5CMZ
-
?
B:
[2-33]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
--
T
W
E
E
W
D
K
K
I
E
E
L
I
K
K
S
E
E
L
I
K
------
K
-----
I
E
E
Q
I
K
K
Q
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------