@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv0465c: (2016-04-22 )
MSKTYVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFFASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSAHPGLACAVVNLHRRYRITTAQLAAATEERFSDGSGRGSITMPHEEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDLARELTRRLTEVHGVRINKRIDLGDTVLHRYDPATNTLEISSHLSPGQQVFKMAAELAYLEFGDLIDAMVTDGKFTSAESRTLARLGLANYFAAATVLPYRQFHDVAENFRYDVERLSAFYSVSYETIAHRLSTLQRPSMRGVPFTFVRVDRAGNMSKRQSATGFHFSSSGGTCPLWNVYETFANPGKILVQIAQMPDGRNYLWVARTVELRAARYGQPGKTFAIGLGCELRHAHRLVYSEGLDLSGDPNTAATPIGAGCRVCERDNCPQRAFPALGRALDLDEHRSTVSPYLVKQL
Atome Classification :
(20 SA)
----.........10........20........30........40-........50........-60....-....70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----MSK
T
Y
V
G
S
R
V
R
Q
L
R
N
ERGF
S
Q
A
A
L
A
Q
M
L
EI
S
P
S
Y
L
N
Q
I
E
HD-V
R
P
L
T
V
A
V
L
L
R
I
T
E
V
FGV-
D
A
T
F
FA-SQD
D
T
R
L
V
A
E
L
R
E
V
TLDRDL
D
I
A
I
D
P
H
E
V
A
E
M
V
SAHPGL
A
C
A
V
V
NL
H
R
R
Y
R
I
T
T
A
Q
L
A
A
A
T
E
E
RFSDGSGRG
S
I
TM
P
H
E
E
V
R
D
Y
F
Y
Q
R
Q
N
Y
L
H
A
L
D
T
A
A
E
D
L
T
A
Q
M
R
M
H
H
G
D
L
A
R
E
L
T
R
R
L
T
E
VH
G
V
R
I
N
K
R
IDL
G
D
T
V
L
H
RYDPAT
N
T
L
E
ISSHLS
P
G
Q
Q
V
F
K
M
A
A
E
L
A
Y
L
E
F
G
D
L
I
D
A
M
VTDGKFTS
A
E
S
R
T
L
A
R
L
G
L
A
N
Y
F
A
A
A
TVL
P
Y
R
Q
F
H
D
V
A
E
N
F
R
Y
D
V
E
R
L
S
A
F
Y
S
V
S
Y
E
T
I
A
H
R
L
S
T
LQRPSMRGV
P
F
T
F
V
R
V
DRAGNMSKRQSATG
F
H
FSSSGGTC
P
L
W
N
V
Y
E
T
FANPG
K
I
L
V
Q
I
AQMPDGR
N
Y
L
W
V
A
R
T
V
E
L
R
A
A
RYGQPG
K
T
F
A
I
GLGCE
L
R
H
A
H
R
L
V
Y
SEGLDLSGDPNTAATPIGAGCRVCERDNCP
Q
R
A
F
P
A
LGRAL
D
L
D
E
HRSTV
S
P
Y
L
VKQL
50
HHSearch
77.09
27%
-105
- C2 -
1B0N
4
SINR_BACSU
A:
[2-71]
---------
I
G
Q
R
I
K
Q
Y
R
K
E
K
G
Y
S
L
S
E
L
A
E
K
A
G
V
A
K
S
Y
L
S
S
I
E
R
N
L
Q
T
N
P
S
I
Q
F
L
E
K
V
S
A
V
L
D
V
-
S
V
H
T
L
L
-
D
E
K
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
77.03
31%
-67
- C2 -
1Y9Q
1
?
A:
[9-92]
------
K
S
Q
I
A
N
Q
L
K
N
L
R
K
S
R
G
L
S
L
D
A
T
A
Q
L
T
G
V
S
K
A
M
L
G
Q
I
E
R
G
-
E
S
S
P
T
I
A
T
L
W
K
I
A
S
--
G
L
-
E
A
S
F
S
A
F
F
A
N
D
P
Q
L
L
S
S
E
R
S
F
P
D
D
L
N
M
K
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
61
Fugue
76.61
23%
-78
* C2 *
1Y7Y
-
?
A:
[5-73]
HDHY
A
D
L
V
K
F
G
Q
R
L
R
E
L
R
T
A
K
G
L
S
Q
E
T
L
A
F
L
S
G
L
D
R
S
Y
V
G
G
V
E
R
G
-
Q
R
N
V
S
L
V
N
I
L
K
L
A
T
A
L
D
I
-
E
P
R
E
L
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
PsiBlast_CBE
76.52
32%
-85
- C2 -
4IWR
2
?
E:
[16-71]
-------------
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
76.15
32%
-77
- C2 -
4I6R
4
?
A:
[16-71]
-------------
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
75.69
32%
-81
- C2 -
4FN3
2
?
A:
[16-71]
-------------
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
A
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
PsiBlast_CBE
75.54
32%
-78
- C2 -
3UFD
2
?
B:
[16-71]
-------------
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
75.41
32%
-83
- C2 -
4IWR
2
?
A:
[16-71]
-------------
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
PsiBlast_CBE
75.39
32%
-80
- C2 -
3S8Q
2
?
B:
[16-71]
-------------
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
PsiBlast_CBE
75.22
32%
-76
- C2 -
4FN3
3
?
B:
[16-71]
-------------
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
A
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
PsiBlast_CBE
75.10
32%
-83
- C2 -
4I6R
3
?
B:
[16-71]
-------------
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
75.00
32%
-78
- C2 -
4X4B
1
?
D:
[16-71]
-------------
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
74.74
32%
-81
- C2 -
3CLC
-
?
A:
[16-71]
-------------
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
74.70
32%
-78
- C2 -
4I8T
2
?
A:
[16-71]
-------------
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
74.65
21%
-73
- C2 -
3U3W
3
?
A:
[3-67]
------
A
E
K
L
G
S
E
I
K
K
I
R
V
L
R
G
L
T
Q
K
Q
L
S
E
N
I
-
C
H
Q
S
E
V
S
R
I
E
S
G
-
A
V
Y
P
S
M
D
I
L
Q
G
I
A
A
K
L
Q
I
-
P
I
I
H
F
Y
-
E
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
PsiBlast_CBE
74.40
32%
-77
- C2 -
3UFD
2
?
E:
[16-71]
-------------
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
74.21
32%
-81
- C2 -
3S8Q
2
?
A:
[16-71]
-------------
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
73.96
32%
-77
- C2 -
3UFD
2
?
A:
[16-71]
-------------
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
PsiBlast_CBE
73.91
32%
-73
- C2 -
4X4B
1
?
A:
[16-71]
-------------
I
K
K
I
R
L
E
K
G
M
T
Q
E
D
L
A
Y
K
S
N
L
D
R
T
Y
I
S
G
I
E
R
N
-
S
R
N
L
T
I
K
S
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
HHSearch
73.81
25%
-88
- C2 -
3QQ6
-
SINR_BACSU
A:
[-1-66]
-------
H
M
I
G
Q
R
I
K
Q
Y
R
K
E
K
G
Y
S
L
S
E
L
A
E
K
A
G
V
A
K
S
Y
L
S
S
I
E
R
N
L
Q
T
N
P
S
I
Q
F
L
E
K
V
S
A
V
L
D
V
-
S
V
H
T
L
L
-
D
E
K
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------