@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv1241: (2016-04-29 )
MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSGLDLAGFNKLADELEDEALLDATRRAR
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........--20..-......30........40..-.....-.50........60-.........70........80.....--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
R
T
T
L
TL
D
D
D
V
V
R
L
V
E
D
A
V
--
H
R
ER-R
P
M
K
Q
V
I
N
D
A
L
R
R
ALAPPV
K
-
R
Q
E
Q
Y-RLE
P
H
E
S
A
V
RSG--LDLA
G
F
N
K
L
A
D
E
L
E
D
E
A
L
L
D
A
T
RRAR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
63.42
23%
-30
- C3 -
4CCZ
1
METH_HUMAN
A:
[4-638]
T
L
R
D
E
I
N
A
I
L
Q
K
R
I
M
V
L
D
G
G
M
G
T
M
I
Q
R
E
KLEEHFRGQEFKDHARPLKGNNDILSITQ
P
D
V
I
Y
Q
I
H
K
E
Y
L
L
AD
I
I
E
T
NTFSSTSIAQADYGLEHL
A
Y
R
M
N
M
C
S
A
G
V
A
R
K
A
A
E
E
V
T
L
Q
T
G
I
K
R
F
V
A
G
A
L
G
PTNKTLSVSPSVERPDYRNIT
F
D
E
L
V
E
A
Y
Q
E
Q
A
K
G
L
L
D
G
GVDILLIETIFD
T
A
N
A
K
A
A
L
F
A
L
Q
N
L
F
EEKYAP
R
P
I
F
I
S
G
T
I
V
D
KSGRTLSGQT
G
E
G
F
V
I
S
V
SHGEPL
C
I
G
L
N
C
ALGAAEMR
P
F
I
E
I
I
G
K
C
T
T
A
Y
V
L
C
Y
P
N
A
GFAMDGLVN
I
V
G
G
C
C
G
S
T
----
P
D
H
I
R
E
I
A
E
A
V
K
N
C
K
P
R
-
V
P
P
A
T
A
F
E
G
H
M
L
L
S
-------
G
L
E
P
F
-
R
I
G
P
Y
T
N
F
V
N
I
G
ER
C
N
V
A
G
S
R
K
F
A
K
L
I
M
A
G
N
Y
E
E
A
L
C
V
A
K
V
Q
V
E
M
GAQ
V
L
D
V
N
MDDGMLD
G
P
S
A
M
T
R
F
C
N
L
I
A
S
E
PDIAK
V
P
L
C
I
D
S
SN
F
A
V
I
E
A
G
L
K
C
CQ
G
K
C
I
V
NSISLKEG
E
D
D
F
L
E
K
A
R
K
I
K
K
Y
G
A
A
M
V
V
M
AFDEEGQATE
T
D
T
K
I
R
V
C
T
R
A
Y
H
L
L
V
KKLGFNPND
I
I
F
D
PNILTIGTGMEEHNL
Y
A
I
N
F
I
H
A
T
K
V
I
K
E
T
L
PG
A
R
I
S
G
GLSNLSFSFRGM
E
A
I
R
E
A
M
H
G
V
F
L
Y
H
A
I
K
S
GMDMGIVNAGNLPVYDDIH
K
E
L
L
Q
L
C
E
D
L
I
W
NKDPE
A
T
E
K
L
L
R
YAQ
21
HHSearch
63.32
27%
-110
- C4 -
4AAI
-
?
A:
[11-51]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
T
T
L
A
F
D
E
D
V
Y
H
T
L
K
L
V
S
--
V
Y
L
N
-
R
D
M
T
E
I
I
E
E
A
V
V
M
W
L
I
Q
N
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
63.20
21%
-112
- C4 -
2AY0
2
PUTA_ECOLI
A:
[4-45]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
M
G
V
M
L
D
D
A
T
R
E
R
I
K
S
A
A
--
T
R
I
D
-
R
T
P
H
W
L
I
K
Q
A
I
F
S
Y
L
E
Q
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
62.31
21%
-114
* C4 *
2GPE
1
PUTA_ECOLI
A:
[4-45]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
M
G
V
K
L
D
D
A
T
R
E
R
I
K
S
A
A
--
T
R
I
D
-
R
T
P
H
W
L
I
K
Q
A
I
F
S
Y
L
E
Q
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
60.46
36%
-27
- C4 -
4TYB
1
?
A:
[312-368]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
L
V
N
G
D
D
L
V
V
I
C
E
S
A
G
--
T
Q
E
D
-
A
A
S
L
R
V
F
T
E
A
M
T
R
Y
S
A
P
P
G
D
P
P
Q
P
E
Y
-
D
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
60.09
36%
-24
- C4 -
4TXS
-
?
A:
[312-369]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
L
V
N
G
D
D
L
V
V
I
C
E
S
A
G
--
T
Q
E
D
-
A
A
S
L
R
V
F
T
E
A
M
T
R
Y
S
A
P
P
G
D
P
P
Q
P
E
Y
-
D
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
59.87
21%
-128
- C4 -
3KXE
-
PARD1_CAUCR
C:
[5-46]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
T
S
V
V
L
G
D
H
F
Q
A
F
I
D
S
Q
V
--
A
D
G
R
Y
G
S
A
S
E
V
I
R
A
G
L
R
L
L
E
E
N
E
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
59.74
36%
-23
- C4 -
4TYA
-
?
A:
[312-369]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
L
V
N
G
D
D
L
V
V
I
C
E
S
A
G
--
T
Q
E
D
-
A
A
S
L
R
V
F
T
E
A
M
T
R
Y
S
A
P
P
G
D
P
P
Q
P
E
Y
-
D
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
59.49
36%
-26
- C4 -
4KE5
1
POLG_HCVBK
A:
[314-374]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
L
V
Y
G
D
D
L
V
V
I
C
E
S
A
G
--
T
Q
E
D
-
A
A
S
L
R
V
F
T
E
A
M
T
R
Y
S
A
P
P
G
D
P
P
Q
P
E
Y
-
D
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
59.18
36%
-26
- C4 -
4KB7
1
POLG_HCVBK
A:
[314-376]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
L
V
Y
G
D
D
L
V
V
I
C
E
S
A
G
--
T
Q
E
D
-
A
A
S
L
R
V
F
T
E
A
M
T
R
Y
S
A
P
P
G
D
P
P
Q
P
E
Y
-
D
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
59.17
19%
-118
- C4 -
2K5J
-
?
A:
[10-51]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
I
L
L
D
L
S
N
E
V
I
K
Q
L
D
D
L
E
--
V
Q
R
N
-
L
P
R
A
D
L
L
R
E
A
V
D
Q
Y
L
I
N
Q
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
59.15
22%
-98
- C4 -
2CPG
1
COPG_STRAG
A:
[4-43]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
T
I
T
L
S
E
S
V
L
E
N
L
E
K
M
A
--
R
E
M
G
-
L
S
K
S
A
M
I
S
V
A
L
E
N
Y
K
K
G
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
59.08
36%
-24
- C4 -
3HHK
1
?
A:
[312-361]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
L
V
N
G
D
D
L
V
V
I
C
E
S
A
G
--
T
Q
E
D
-
A
A
S
L
R
V
F
T
E
A
M
T
R
Y
S
A
P
P
G
D
P
P
Q
P
E
Y
-
D
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
58.27
36%
-29
- C4 -
4KBI
1
?
A:
[314-377]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
L
V
Y
G
D
D
L
V
V
I
C
E
S
A
G
--
T
Q
E
D
-
A
A
S
L
R
V
F
T
E
A
M
T
R
Y
S
A
P
P
G
D
P
P
Q
P
E
Y
-
D
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
58.08
36%
-22
- C4 -
2D3U
-
?
A:
[312-361]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
L
V
N
G
D
D
L
V
V
I
C
E
S
A
G
--
T
Q
E
D
-
A
A
S
L
R
V
F
T
E
A
M
T
R
Y
S
A
P
P
G
D
P
P
Q
P
E
Y
-
D
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
58.03
36%
-20
- C4 -
4TY8
-
?
A:
[312-369]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
L
V
N
G
D
D
L
V
V
I
C
E
S
A
G
--
T
Q
E
D
-
A
A
S
L
R
V
F
T
E
A
M
T
R
Y
S
A
P
P
G
D
P
P
Q
P
E
Y
-
D
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
58.02
18%
-98
- C4 -
1P94
-
?
A:
[36-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
N
V
N
F
D
E
E
K
H
T
R
F
K
A
A
C
--
A
R
K
G
-
T
S
I
T
D
V
V
N
Q
L
V
D
N
W
L
K
E
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
57.87
36%
-16
- C4 -
2D41
-
?
A:
[312-361]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
L
V
N
G
D
D
L
V
V
I
C
E
S
A
G
--
T
Q
E
D
-
A
A
S
L
R
V
F
T
E
A
M
T
R
Y
S
A
P
P
G
D
P
P
Q
P
E
Y
-
D
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
57.41
36%
-17
- C4 -
1NHU
-
?
A:
[320-369]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
L
V
N
G
D
D
L
V
V
I
C
E
S
A
G
--
T
Q
E
D
-
A
A
S
L
R
V
F
T
E
A
M
T
R
Y
S
A
P
P
G
D
P
P
Q
P
E
Y
-
D
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
57.28
24%
-33
- C4 -
2WJF
2
CPSB_STRPN
A:
[102-166]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
N
D
S
R
Y
A
L
I
E
F
S
M
--
N
T
P
Y
-
R
D
I
H
S
A
L
S
K
I
L
M
L
G
I
T
P
V
I
A
-
H
I
E
R
Y
D
A
L
E
N
N
E
K
R
V
R
E
L
--
I
D
M
G
C
Y
T
Q
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------