@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv1929c: (2016-05-06 )
MADVPLDAQERLELCDLLEELGPAVATLIEGWTAHDLAAHIVLRERDLVAGLCIVLPGPFQRFAERRRARLAQSKDFTWLVARIRSGPPMGFFRIGWVRTLANLNEFFVHHEDVRRASGRGPRSLTPEMDAALWRNVRRGSHFLSRRLHGCGLEIEWVGTGKRVRVRSGEPTARLTGPPGELLLYVFGRRAVARVEVSGPLEAIAAVHRTHFGM
Atome Classification :
(20 SA)
---------------------------.........10....----------....20..----.---....--.30...--.....40......-.---------.50..----.---------------..-...----60-----.-.......70....---....80..-......90-----------..---------...-.---------------------...100--........110-----------.---------.......120.......130-----.........--140.......150---........--160-----......--.170.......180...--....190----------.------..-....----200....------...210..-----------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------MADVPL
D
A
Q
E
R
L
E
L
C
----------
D
L
L
E
E
L
G
P
----
A
---
V
A
T
L
--IEGW
T
A
--
H
D
L
A
A
H
I
V
L
RERD-L---------V
A
G
L
C
----
I
---------------VL-PG
P
----
F
Q
-----
R
-
F
A
E
R
R
R
A
R
L
AQSK---
D
F
T
W
L
V
A
R
-IRSGPPM------------
G
F
---------
F
R
I
-
G
---------------------
W
V
R
T
L
---
A
N
L
N
E
F
F
V
H
H
------------
E
---------
D
V
R
RASGRGPRSLT
P
E
M
D
-------
A
A
L
W
R
N
V
R
R
--
G
S
H
F
L
S
R
R
LHGC----G
L
E
I
E
W
VG--TG
K
-----
R
V
R
VRS--GEP
T
A
R
LTGPP
G
E
L
L
L
Y
--
V
FGR
R
A
V
----------
A
------
R
V
-EVSG----
P
L
E
A
I
A
A
------
V
H
R
THFGM-----------------------------------------------------------
23
Fugue
73.60
14%
-54
- C4 -
2NSF
5
?
A:
[21-260]
------------------MTTFHDLP
L
E
E
R
L
T
L
A
R
L
G
T
S
H
Y
S
----------
R
Q
L
S
L
V
D
N
----
A
EFG
E
H
S
L
--
L
E
G
W
T
R
--
S
H
L
I
A
H
V
A
Y
N
A
I
A
-
L
---------
C
N
L
M
H
----
W
---------------
A
N
-
T
G
E
----
E
T
PMYVS
P
-
E
A
R
N
E
E
I
A
Y
G
S
T
L
---
N
P
D
A
L
R
N
L
-
H
E
H
S
V
A
R
------------
L
D
---------
V
A
W
-
R
E
TS
E
D
A
W
S
H
E
V
L
T
AQG
R
T
V
P
A
S
E
T
L
W
---
M
R
S
R
E
V
W
I
H
A
------------
V
---------
D
L
G
A
V
A
T
-----
F
G
D
I
P
E
-------
V
I
L
R
T
L
A
A
E
--
I
T
Q
K
W
T
S
Q
G
A
G
E
----
G
L
V
L
L
D
E
P
--
S
S
T
-----
R
Y
P
A
A
P
--
G
Q
D
E
V
V
V
S
G
S
L
A
G
I
V
R
Y
--
A
A
G
R
G
S
D
----------
G
------
V
T
-
S
S
T
G
----
E
V
P
E
P
P
R
------
W
------------------------------------------------------------------
3
HHSearch
72.34
15%
-39
- C4 -
2NSF
5
?
A:
[32-251]
-----------------------------
R
L
T
L
A
R
L
G
T
S
H
Y
S
----------
R
Q
L
S
L
V
D
N
AEF-
G
---
E
H
S
L
--
L
E
G
W
T
R
--
S
H
L
I
A
H
V
A
Y
N
A
I
A
L
C
---------
N
L
M
H
W
A
N
T
G
E
---------------
E
T
-
P
M
Y
-----
V
-----
S
P
E
A
R
N
E
E
I
A
Y
G
S
T
L
---
N
P
D
A
L
R
N
L
-
H
E
H
S
V
A
R
L
D
V
A
W
R
E
TS
E
D
A
W
S
H
E
V
L
T
AQG
R
T
V
P
-
A
---------------------
S
E
T
L
W
---
M
R
S
R
E
V
W
I
H
A
------------
V
---------
D
L
G
A
V
A
T
-
F
-
G
D
I
P
E
V
I
L
-------
R
T
L
A
A
E
I
T
Q
--
K
W
T
S
--
Q
G
A
-
G
E
----
G
L
V
L
L
D
E
P
SS
T
R
Y
-----
P
A
--
A
P
--
G
Q
D
E
V
V
V
S
G
S
L
A
G
I
V
R
Y
--
A
A
G
R
G
S
-----------
D
------
G
V
-
T
S
S
T
------------------------------------------------------------------------------------
28
Fugue
72.25
22%
-70
- C1 -
4R1D
-
?
B:
[1-301]
-------------MDKTG
W
I
T
H
C
F
GR
F
L
I
D
L
P
P
D
A
V
I
N
A
G
Y
Y
L
WGDRIEYLD
D
K
P
T
E
L
A
A
----
R
---
V
D
R
L
--
E
Q
E
W
R
T
QR
H
K
S
K
G
N
M
F
L
R
K
I
D
-
F
GNE------
S
V
G
L
L
----
S
WSSEVASK
T
Y
L
L
D
T
Y
V
T
-
S
K
P
T
W
H
V
Y
R
-----
W
-
K
G
K
V
S
V
D
R
E
Q
H
A
V
---
E
I
S
R
A
L
A
R
N
L
R
S
R
A
P
K
------------
E
I
PS
E
P
G
----
F
C
I
-
D
---------------------
H
A
Y
I
A
GDS
F
Q
V
E
R
F
G
V
G
V
------------
T
F
PEHPG
A
R
F
E
F
R
S
S
T
G
A
E
L
N
S
L
L
E
R
V
D
-------
G
F
V
Q
N
M
L
S
T
F
A
G
M
E
T
L
R
K
G
K
H
P
V
GSLP
G
E
E
Y
L
V
A
G
--
S
D
K
G
Q
R
G
Y
T
F
M
W
E
V
--
Q
G
K
E
E
S
L
T
E
P
N
L
T
A
G
L
A
--
V
L
E
R
S
N
E
NGKPPPPAFK
S
------
D
K
-
E
A
L
E
----
L
W
D
T
I
V
D
------
S
I
R
V
R
P
T
S
-----------------------------------------------------------
26
Fugue
71.54
14%
-67
- C3 -
3MX1
-
?
A:
[3-210]
-----------------------------
N
K
K
F
D
R
S
E
H
V
Y
R
N
----------
D
S
F
L
E
L
I
K
----
D
---
A
V
R
F
--
F
S
G
T
P
V
--
H
S
L
P
P
----
P
E
R
F
-
Q
---------
G
A
G
V
Y
----
A
---------------
L
Y
Y
T
G
H
----
Y
S
-----
L
-
Y
D
E
Y
S
R
I
N
R
L
A
Y
N
---
L
P
I
Y
V
G
K
A
-
V
P
A
G
W
R
Q
------------
S
R
---------
I
S
D
-
H
---------------------
E
T
R
A
G
---
S
E
L
S
N
R
I
R
E
H
G
R
N
I
A
K
TSNLDL
C
---------
D
F
S
C
R
F
V
I
F
E
A
T
G
S
D
M
I
S
-------
T
V
Q
A
A
L
I
K
I
--
Y
K
P
L
W
N
T
V
V
D
G
F
----
G
---------------------
N
H
--
T
P
G
A
G
R
F
A
Q
A
K
S
D
W
D
V
I
--
H
P
G
R
E
W
A
----------
E
------
K
C
T
G
V
H
S
----
E
P
Y
F
I
E
E
------
R
I
K
Q
Y
F
S
K
-----------------------------------------------------------
29
Fugue
63.64
17%
-55
* C5 *
1JSD
4
?
A:
[1-317]
D
K
I
C
I
G
Y
Q
S
T
NST
E
T
V
D
T
LTETNVPVT
H
A
K
E
L
L
H
T
S
H
N
G
M
L
C
----------
A
T
-
N
L
G
H
P
----
L
---
I
L
D
T
CT
I
E
G
L
I
Y
--
G
N
P
S
C
D
L
L
L
G
G
R
E
-
W
S
Y
I
V
E
R
PSA
V
N
G
M
C
---------------------
Y
-
P
G
N
----
V
E
-----
N
--
L
E
E
L
R
S
L
F
S
S
A
S
---
S
Y
Q
R
I
Q
I
------
F
P
D
------------
T
I
---------
W
N
V
-
S
---------------------
Y
S
G
T
S
---
S
A
C
S
D
S
F
Y
R
S
------------
M
---------
R
W
L
T
Q
K
N
N
A
Y
P
I
Q
D
A
Q
Y
T
N
NRG
K
S
I
L
F
M
W
G
I
N
H
P
--
P
T
D
T
V
Q
T
N
L
Y
T
R
----
T
D
T
T
T
S
V
T
--
T
E
D
-----
I
N
R
T
F
K
P
V
I
G
P
R
P
L
V
N
G
L
H
G
R
I
D
Y
Y
W
S
V
L
K
P
G
Q
T
----------
L
------
R
V
-
R
S
N
G
NLI
A
P
W
Y
G
H
I
L
------
S
G
E
S
H
G
R
I
L
K
T
DLNSGNCVVQCQTER
G
G
L
N
T
TLPFHNVSKYAFGNCPKYVGVK
S
L
K
L
A
VGLRNVPAR
30
Fugue
62.57
15%
-26
- C2 -
1ZWT
-
BFPA_ECO27
A:
[1-158]
---------------------------
M
E
Q
S
A
S
D
S
N
K
S
Q
N
A
I
----------
S
E
V
M
S
A
T
S
----
A
---
I
N
G
L
--
Y
I
G
Q
T
S
--
Y
S
G
L
D
S
T
I
L
L
N
T
S
----------------------------------------
A
I
----
P
D
-----
N
-
Y
K
D
T
T
N
K
K
I
T
N
P
F
---
G
-----
G
E
-
L
N
V
G
P
A
N
------------
N
N
---------
T
A
F
-
G
---------------------
Y
Y
L
T
L
---
T
R
L
D
-------------------------------------------------------
K
A
A
C
V
S
L
--
A
T
L
N
L
G
T
S
A
K
G
Y
----
G
V
N
I
S
------------------
G
--
E
N
N
I
T
S
F
G
N
S
A
D
Q
------------
A
----------
A
------
K
S
-
T
A
I
T
----
P
A
E
A
A
T
A
C
KNTDS
T
N
K
V
T
Y
F
M
K----------------------------------------------------------
25
Fugue
62.38
14%
-57
- C3 -
3MK7
5
?
B:
[6-202]
--------------KLEKN
V
G
L
L
T
L
F
M
I
L
A
V
S
I
G
G
L
T
Q
I
V
P
L
----------
F
F
Q
D
S
V
N
E
----
P
---
V
E
G
M
---
K
P
Y
T
A
--
L
Q
L
E
G
R
D
L
Y
I
R
E
G
-----------
C
V
G
C
H
----
S
---------------
Q
M
-
I
R
P
----
F
R
-----
A
-
E
T
E
R
Y
G
H
Y
S
V
A
G
E
SVY
D
H
P
F
L
W
G
S
-
K
R
T
G
P
D
L
------------
A
-----------
R
V
-
G
------------------------
G
R
---
Y
S
D
D
W
H
R
A
H
L
------------
Y
---------
N
P
R
N
V
V
P
E
S
K
M
P
S
Y
P
W
L
V
-------
E
N
T
L
D
G
K
D
T
--
A
K
K
M
S
A
L
R
M
L
G
V
----
P
Y
T
E
E
D
I
A
-------------------
G
A
R
D
S
V
N
G
K
T
------------
E
M
D
----------
A
------
M
V
-
A
Y
L
Q
----
V
L
G
T
A
L
T
------
N
K
-----------------------------------------------------------------
27
Fugue
60.58
16%
-29
- C3 -
2JHB
-
PEBB_MOUSE
A:
[1-143]
-------------------------GS
M
P
R
V
V
P
D
Q
R
S
K
F
E
N
E
----------
E
F
F
R
K
L
S
R
----
E
---
C
E
I
K
--
Y
T
G
F
R
D
--
R
P
H
-------------------------------------------------------------------
E
E
R
Q
T
R
F
Q
N
A
C
---
R
D
---------
G
R
S
E
I
------------
A
F
---------
V
A
T
-
G
--------------------------------
T
N
L
S
L
Q
F
------------
F
---------
P
A
S
W
Q
G
E
Q
R
Q
T
P
S
R
E
Y
V
D
----------------------
L
E
R
E
A
G
K
V
----
Y
L
K
A
P
M
I
L
--
N
G
V
-----
C
V
I
W
K
G
--
W
I
D
L
H
R
L
D
G
----------------
M
----------
G
------
C
L
-
E
F
D
-------
E
E
R
A
Q
------
Q
E
D
A
L
A
Q
Q
-----------------------------------------------------------
14
HHSearch
53.18
19%
-43
- C4 -
3DKA
1
YJOA_BACSU
A:
[9-62]
------------------------------
V
S
H
F
L
S
H
R
N
V
T
N
----------
E
L
A
E
K
I
S
K
DHYS
Y
---
K
P
A
---
E
T
S
M
S
A
--
E
E
L
V
K
H
I
L
T
S
F
H
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
52.89
17%
-28
- C5 -
4DMI
3
?
A:
[4-176]
----------------------------
Q
F
R
I
D
S
E
S
I
R
D
K
L
N
----------
T
L
L
P
S
Q
S
R
----
L
---
S
G
S
----------------
T
T
I
I
P
V
V
D
-
L
---------
T
E
T
A
------------------------
E
G
G
----
A
Q
-----
R
-
E
D
L
Q
K
A
F
T
L
I
N
T
I
---
D
F
D
V
E
N
T
T
-
T
T
I
A
N
T
P
------------
G
F
---------
Y
K
V
V
G
---------------------
N
L
S
S
R
---
D
E
A
S
G
A
I
A
V
I
------------
E
---------
V
T
D
--------
G
I
T
T
K
I
L
-------
A
N
N
R
I
V
S
P
D
--
G
T
T
A
V
Q
S
V
P
V
P
F
----
D
L
M
V
K
L
V
A
---
G
D
-----
T
L
Q
A
R
S
--
N
N
A
E
V
R
V
Q
G
----------------
I
----------
A
------
R
Q
-
I
A
D
V
----
S
G
N
L
I
N
P
-------------------------------------------------------------------------
10
HHSearch
51.60
28%
-30
- C4 -
2YQY
-
?
A:
[14-90]
------------------------------
L
K
R
L
E
A
S
R
K
A
L
L
----------
A
L
L
R
E
A
D
P
A
W
L
-
S
---
A
P
L
R
--
E
G
A
W
T
P
--
L
M
V
A
E
H
V
A
L
V
E
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
50.80
22%
-58
- C4 -
1PZ4
1
?
A:
[64-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
A
E
A
T
L
T
M
E
D
D
I
M
F
A
I
--
G
T
G
A
L
P
A
----------
K
E
A
M
A
Q
D
K
M
-
E
V
D
G
----
Q
V
E
L
I
F
L
------
L
E
P
----------------------------------------------------------------
12
HHSearch
50.67
21%
-61
- C4 -
3GOR
1
?
A:
[11-57]
------------------------------
V
Q
Y
F
L
S
H
R
H
V
T
M
----------
E
L
I
H
K
I
D
E
AHYD
Y
---
K
P
T
P
---
T
S
M
T
A
--
K
Q
L
A
T
H
M
L
F
S
F
Y
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
46.79
12%
-58
- C4 -
1C44
-
A:
[68-114]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
D
C
T
I
T
M
A
D
S
D
L
L
A
L
--
M
T
G
K
M
N
P
----------
Q
S
A
F
F
Q
G
K
L
-
K
I
T
G
----
N
M
G
L
A
M
K
------
L
Q
N
L
---------------------------------------------------------------
17
HHSearch
42.46
21%
-30
- C4 -
3DI5
1
?
A:
[11-56]
-------------------------------
Q
S
W
T
Y
E
T
E
S
T
Q
----------
K
M
L
D
V
L
T
D
E
S
L
S
Q
---
E
I
A
---
P
G
H
W
T
L
--
G
R
V
A
W
H
I
V
T
A
I
P
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
41.96
19%
-25
- C4 -
2F22
1
?
A:
[5-50]
-------------------------------
N
G
V
L
Y
A
A
N
M
T
N
----------
A
L
A
K
E
I
P
E
SKW-
D
---
I
Q
L
I
--
P
E
L
G
T
L
--
R
K
L
F
I
H
I
V
R
V
R
D
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
40.36
14%
-26
- C4 -
2HKV
4
?
A:
[16-56]
------------------------------------
G
V
R
T
T
R
----------
D
L
I
R
L
I
Q
P
EDWD
K
---
R
P
I
S
---
G
K
R
S
V
--
Y
E
V
A
V
H
L
A
V
L
L
E
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
39.28
23%
-11
- C4 -
2OU6
3
?
A:
[39-84]
-------------------------------
E
M
L
T
Y
A
R
L
T
T
L
----------
Q
A
V
E
G
L
P
E
DQL-
W
---
A
T
A
P
--
G
F
A
N
S
I
--
G
T
L
L
A
H
I
A
A
V
E
R
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
39.04
13%
4
- C4 -
1RXQ
1
YFIT_BACSU
A:
[27-74]
-----------------------------
W
I
Q
V
L
E
E
V
P
A
K
L
K
----------
Q
A
V
E
V
M
T
D
S
Q
L
-
D
---
T
P
Y
R
--
D
G
G
W
T
V
--
R
Q
V
V
H
H
L
A
D
S
H
M
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
38.40
10%
-24
- C4 -
2QNL
5
?
A:
[15-59]
-------------------------------
D
A
W
N
T
Q
S
S
R
T
D
----------
K
L
I
Q
S
L
S
N
E
A
L
A
V
---
E
T
A
---
P
G
R
N
S
G
--
T
Y
L
L
G
H
L
T
A
V
H
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------