@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv3203: (2016-05-17 )
MPEIPIAAPDLLGHGRSPWAAPWTIDANVSALAALLDNQGDGPVVVVGHSFGGAVAMHLAAARPDQVAALVLLDPAVALDGSRVREVVDAMLASPDYLDPAEARAEKATGAWADVDPPVLDAELDEHLVALPNGRYGWRISLPAMVCYWSELARDIVLPPVGTATTLVRAVRASPAYVSDQLLAALDKRLGADFELLDFDCGHMVPQAKPTEVAAVIRSRLGPR
Atome Classification :
(20 SA)
---------------------------------------------------------------.....----....10......------.--.20----.----.------..-.....30--.......--.---40...----......50........60..-......70...--..-.---..80..--.--.-----------....90-----------.....---...----100.......110.......120.......130.......140--.........150.......160.......170.-......180.......190.......--200.......210.......220..--------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------MPEIP----IAA
P
D
L
LGHGRS------P--WA-----A----
P
------
W
T
-ID
A
N
V
S
A
--
L
A
A
L
L
DN--Q---G-DG
P
----
V
V
V
V
GHSFG
G
A
V
A
M
H
L
AAAR-PD
Q
V
A
A
L
V
L
LD--PA-V---AL
D
G
S
R
--
V
--
R
-----------
E
V
V
D
A
M
-----------LASPD---YL
D
----
P
A
E
A
R
A
E
KATGAWADVDPPV
L
D
A
E
L
D
E
H
L
V
ALPNGR
Y
G
W
R
I----S
L
P
A
M
V
C
Y
W
S
E
L
A
R
D
IVLPPV
G
T
A
T
T
L
V
R
A
V
RA-SP
A
Y
V
S
D
Q
L
L
A
A
L
D
K
R
LGAD
F
E
L
L
DF--DCGHMVPQAK
P
T
E
V
A
A
V
I
R
S
RLGPR--------------------------------------------------------------------------
2
PsiBlast_PDB
90.50
27%
-117
- C2 -
3P2M
-
?
A:
[107-329]
-------------------------------------------------------------------
P
----
A
L
A
V
D
L
P
G
H
G
H
S
------
A
--
W
R
ED---
G
----
N
------
Y
S
-
P
Q
L
N
S
E
T
--
L
A
P
V
L
R
E
--
L
---
A
-
P
G
A
----
E
F
V
V
G
M
S
L
G
G
L
T
A
I
R
L
A
A
M
A
-
P
D
L
V
G
E
L
V
L
V
D
VT
P
S
-
A
---
L
Q
R
H
A
E
--
L
T
A--------------------------------
E
R
---
E
F
P
----
S
F
Q
A
M
L
D
L
T
I
A
A
A
P
H
R
D
V
K
S
L
R
R
G
V
F
H
N
S
R
R
L
D
N
G
N
W
V
W
R
Y
DAIR
T
F
G
D
F
A
G
L
W
D
D
V
--
D
A
L
S
A
P
I
----
T
L
V
R
G
--
G
-
S
S
G
F
V
T
D
Q
D
T
A
E
L
H
R
R
-
A
T
H
F
R
G
V
H
I
V
E
K
S
G
H
S
V
Q
S
D
Q
P
R
A
L
I
E
I
V
R
G
V
L
D
T
---------------------------------------------------------------------------
108
Fugue
83.21
24%
-110
- C2 -
3BF8
1
YBFF_ECOLI
A:
[1-255]
------------------------MK
L
N
I
R
A
Q
T
AQNQHNN
S
P
I
V
L
V
H
G
L
FGSLDNL
G
V
L
A
R
D
L
V
N
D
H
N
----
I
I
Q
V
D
V
R
N
H
G
L
S
------
P
--
R
E
-----
P
----
V
------
M
N
-
Y
P
A
M
A
Q
D
--
L
V
D
T
L
D
A
--
Q
---
Q
-
I
D
K
----
A
T
F
I
G
H
S
M
G
G
K
A
V
M
A
L
T
A
L
A
-
P
D
R
I
D
K
L
V
A
I
D
--
I
A
P
V
---
D
Y
H
V
R
R
--
H
--
D
-----------
E
I
F
A
A
I
-----------
N
A
V
S
E
-------------
S
D
A
Q
T
R
Q
Q
A
A
A
I
M
R
Q
H
L
N
E
E
G
V
I
Q
F
L
L
K
S
F
V
D
G
-
E
W
R
F
----
N
V
P
V
L
W
D
Q
Y
P
H
I
V
G
W
E
K
I
P
A
W
D
H
P
A
L
F
I
P
G
G
N
S
-
P
--
Y
V
S
E
Q
Y
R
D
D
L
L
A
Q
F
P
Q
A
R
A
H
V
I
A
--
G
A
G
H
W
V
H
A
E
K
P
D
A
V
L
R
A
I
R
R
Y
L
N
D
H
--------------------------------------------------------------------------
110
Fugue
66.44
18%
-87
- C2 -
1Y37
1
DEHA_BURSP
A:
[1-294]
-------------------MFEG
F
E
R
R
LVDVGD
V
T
I
N
C
V
V
G
G
S
G
P
A
L
L
L
L
H
G
F
PQNLHMW
A
R
V
A
P
L
L
A
NEYT
V
V
C
A
D
L
R
G
Y
G
G
S
SKPVGA
P
--
D
H
-----
A
----
N
------
Y
S
-
F
R
A
M
A
S
D
--
Q
R
E
L
M
R
T
--
L
---
G
-
F
E
R
----
F
H
L
V
G
H
D
R
G
G
R
T
G
H
R
M
A
L
D
H
-
P
D
S
V
L
S
L
A
V
L
D
II
P
T
-
Y
---
V
M
F
E
E
V
--
D
--
R
-----------
F
V
A
R
A
Y
W
H
W
Y
F
L
Q
QPAP
Y
P
E
K
V
---
I
G
A
----
D
P
D
T
F
Y
E
G
C
L
F
G
W
G
A
T
G
A
D
G
F
D
P
E
Q
L
E
E
Y
R
K
Q
W
R
D
P
A
A
I
H
G
----
S
C
C
D
Y
R
A
G
G
T
I
D
F
E
L
D
H
G
D
L
G
R
Q
V
Q
C
P
A
L
V
F
S
G
S
A
G
L
M
H
S
L
F
E
M
Q
V
V
W
A
P
R
L
A
N
M
R
F
A
S
L
--
P
G
G
H
F
F
V
D
R
F
P
D
D
T
A
R
I
L
R
E
F
L
S
D
A
R
S------------------------------------------------------------------------
109
Fugue
62.15
18%
-87
- C2 -
3C5V
-
PPME1_HUMAN
A:
[39-376]
RDFSPVPWSQYFESMED
V
E
V
E
N
ET
G
K
D
T
F
R
V
Y
K
S
G
S
E
GPVL
L
L
L
H
G
G
GHSALSW
A
V
F
T
A
A
I
I
S
R
V
Q
C
R
----
I
V
A
L
D
L
R
S
H
G
E
T
------
K
--
V
K
-----
N
----
P
ED----
L
S
-
A
E
T
M
A
K
D
--
V
G
N
V
V
E
A
--
M
YGD
L
-
P
P
P
----
I
M
L
I
G
H
S
M
G
G
A
I
A
V
H
T
A
S
S
N
L
V
P
S
L
L
G
L
C
M
I
D
--
V
V
-
E
---
G
T
A
M
D
A
--
L
--
N
-----------
S
M
Q
N
F
L
-----------
R
G
R
P
K
---
T
F
K
----
S
L
E
N
A
I
E
W
S
V
K
S
G
Q
I
R
N
L
E
S
A
R
V
S
M
V
G
Q
V
K
Q
--
C
E
P
Y
T
W
R
I
----
E
L
A
K
T
E
K
Y
W
D
G
W
F
R
G
L
S
N
L
F
L
S
C
P
I
P
K
L
L
L
L
A
G
-
V
D
R
L
D
K
D
L
T
I
G
Q
M
Q
G
K
--
F
Q
M
Q
V
L
P
---
Q
C
G
H
A
V
H
E
D
A
P
D
K
V
A
E
A
V
A
T
F
L
I
R
H
RFAEPI--------------------------------------------------------------------
19
PsiBlast_PDB
59.64
36%
-124
- C2 -
4I3F
2
?
A:
[78-153]
--------------------------------------------------------------------------
A
P
D
I
A
G
F
G
L
S
------
Q
--
H
N
-----
C
----
P
P
N
G
T
S
H
W
--
I
D
I
W
V
Q
Q
--
Q
I
D
L
L
D
A
--
K
---
G
-
I
E
Q
----
T
H
I
V
G
N
S
M
G
G
G
V
T
L
H
L
L
N
R
H
-
P
E
R
F
K
K
A
V
L
M
G
--
P
V
-
G
---
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
PsiBlast_CBE
58.72
32%
-122
- C2 -
2CJP
2
?
B:
[63-176]
--------------------------------------------------------------------------
A
P
D
L
R
G
Y
G
D
T
------
T
--
G
A
PLNDP
S
----
K
------
F
S
-
I
L
H
L
V
G
D
--
V
V
A
L
L
E
A
IA
P
---
N
-
E
E
K
----
V
F
V
V
A
H
D
W
G
A
L
I
A
W
H
L
C
L
F
R
-
P
D
K
V
K
A
L
V
N
L
S
--
V
H
-
F
---
S
K
R
N
P
K
MN
V
--
V
-----------
E
G
L
K
A
I
-----------
Y
G
E
D
H
---
Y
I
S
R
F
QV
P
G
E
I
E
A
E
F
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
PsiBlast_CBE
58.54
32%
-123
- C2 -
2CJP
1
?
A:
[63-176]
--------------------------------------------------------------------------
A
P
D
L
R
G
Y
G
D
T
------
T
--
G
A
PLNDP
S
----
K
------
F
S
-
I
L
H
L
V
G
D
--
V
V
A
L
L
E
A
IA
P
---
N
-
E
E
K
----
V
F
V
V
A
H
D
W
G
A
L
I
A
W
H
L
C
L
F
R
-
P
D
K
V
K
A
L
V
N
L
S
--
V
H
-
F
---
S
K
R
N
P
K
MN
V
--
V
-----------
E
G
L
K
A
I
-----------
Y
G
E
D
H
---
Y
I
S
R
F
QV
P
G
E
I
E
A
E
F
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
PsiBlast_CBE
58.47
32%
-125
- C2 -
3CXU
1
?
A:
[63-176]
--------------------------------------------------------------------------
A
P
D
L
R
G
Y
G
D
T
------
T
--
G
A
PLNDP
S
----
K
------
F
S
-
I
L
H
L
V
G
D
--
V
V
A
L
L
E
A
IA
P
---
N
-
E
E
K
----
V
F
V
V
A
H
D
W
G
A
L
I
A
W
H
L
C
L
F
R
-
P
D
K
V
K
A
L
V
N
L
S
--
V
H
-
F
---
S
K
R
N
P
K
MN
V
--
V
-----------
E
G
L
K
A
I
-----------
F
G
E
D
H
---
Y
I
S
R
F
QV
P
G
E
I
E
A
E
F
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
134
HHSearch
58.15
25%
-130
- C2 -
4LXH
1
?
A:
[54-133]
-----------------------------------------------------------------
H
M
R
----
V
I
A
Y
D
M
V
G
F
G
Q
T
------
D
--
A
P
-----
D
PAGF
A
------
Y
T
-
Q
A
A
R
T
D
H
--
L
I
S
F
I
K
A
--
L
---
G
-
L
S
K
----
I
C
L
I
G
N
A
M
G
G
T
T
A
C
G
A
A
L
K
A
-
P
E
L
I
D
R
L
V
L
M
G
--
A
A
-
V
---
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
57.97
31%
-124
- C2 -
3PF8
1
?
A:
[82-175]
----------------------------------------------------------------------------
D
F
N
G
H
G
D
S
------
D
--
G
K
F----
E
----
N
------
M
T
-
V
L
N
E
I
E
D
--
A
N
A
I
L
N
Y
--
V
---
K
-
T
D
P
HVR
N
I
Y
L
V
G
H
S
Q
G
G
V
V
A
S
M
L
A
G
L
Y
-
P
D
L
I
K
K
V
V
L
L
A
--
P
A
-
A
---
T
L
K
G
D
A
--
L
--
E
-----------
G
N
T
Q
G
V
-----------
T
Y
N
P
D
---
H
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
PsiBlast_CBE
57.27
35%
-111
- C2 -
4UHF
3
?
A:
[52-137]
-----------------------------------------------------------------
E
F
R
----
V
I
V
P
D
L
R
G
F
G
E
S
Q
V
I
---
P
--
G
V
-----
A
------------
T
-
M
E
A
M
A
D
D
--
L
A
G
L
C
N
H
--
L
---
G
L
T
G
K
----
I
V
L
G
G
L
S
M
G
G
Y
V
A
F
A
F
A
R
K
Y
-
R
D
R
L
A
G
L
I
L
C
D
--
T
R
-
A
---
R
P
D
S
P
E
--
A
--
K
-----------
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
PsiBlast_CBE
57.25
35%
-113
- C2 -
4UHE
4
?
A:
[52-137]
-----------------------------------------------------------------
E
F
R
----
V
I
V
P
D
L
R
G
F
G
E
S
Q
V
I
---
P
--
G
V
-----
A
------------
T
-
M
E
A
M
A
D
D
--
L
A
G
L
C
N
H
--
L
---
G
L
T
G
K
----
I
V
L
G
G
L
S
M
G
G
Y
V
A
F
A
F
A
R
K
Y
-
R
D
R
L
A
G
L
I
L
C
D
--
T
R
-
A
---
R
P
D
S
P
E
--
A
--
K
-----------
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
57.21
31%
-123
- C2 -
3PF8
1
?
B:
[82-175]
----------------------------------------------------------------------------
D
F
N
G
H
G
D
S
------
D
--
G
K
F----
E
----
N
------
M
T
-
V
L
N
E
I
E
D
--
A
N
A
I
L
N
Y
--
V
---
K
-
T
D
P
HV
R
N
I
Y
L
V
G
H
S
Q
G
G
V
V
A
S
M
L
A
G
L
Y
-
P
D
L
I
K
K
V
V
L
L
A
--
P
A
-
A
---
T
L
K
G
D
A
--
L
--
E
-----------
G
N
T
Q
G
V
-----------
T
Y
N
P
D
---
H
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
PsiBlast_CBE
57.00
35%
-114
- C2 -
4UHH
3
?
A:
[52-137]
-----------------------------------------------------------------
E
F
R
----
V
I
V
P
D
L
R
G
F
G
E
S
Q
V
I
---
P
--
G
V
-----
A
------------
T
-
M
E
A
M
A
D
D
--
L
A
G
L
C
N
H
--
L
---
G
L
T
G
K
----
I
V
L
G
G
L
S
M
G
G
Y
V
A
F
A
F
A
R
K
Y
-
R
D
R
L
A
G
L
I
L
C
D
--
T
R
-
A
---
R
P
D
S
P
E
--
A
--
K
-----------
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
111
Fugue
56.91
13%
-88
- C2 -
1QJ4
5
HNL_HEVBR
A:
[2-257]
-------------------------------------A
F
A
H
F
V
L
I
H
T
I
CHGAWIW
H
K
L
K
P
L
L
E
A
L
G
H
K
----
V
T
A
L
D
L
A
A
S
G
V
D
------
P
RQ
I
E
-----
E
----
I
------
G
S
-
F
D
E
Y
S
E
P
--
L
L
T
F
L
E
A
L-
P
---
P
-
G
E
K
----
V
I
L
V
G
E
S
C
G
G
L
N
I
A
I
A
A
D
K
Y
-
C
E
K
I
A
A
A
V
F
H
N
--
S
V
-
L
---
P
D
T
E
H
C
--
P
--
S
-----------
Y
V
V
D
K
L
-----------
M
E
V
F
P
DWK
D
T
T
----
Y
F
T
Y
T
K
D
G
K
E
I
T
G
L
K
L
G
F
T
L
L
R
E
N
L
Y
T
L
C
G
P
E
E
Y
E
L
A
K
M
L
T
----
R
K
G
S
L
F
Q
N
I
L
A
K
R
P
F
F
T
K
E
G
Y
G
S
I
K
K
I
Y
V
W
T
D
Q
-
D
E
I
-
F
L
P
E
F
Q
L
W
Q
I
E
N
Y
K
P
D
K
V
Y
K
V
E
--
G
G
D
H
K
L
Q
L
T
K
T
K
E
I
A
E
I
L
Q
E
V
A
D
T
Y
N-------------------------------------------------------------------------
17
PsiBlast_PDB
56.89
30%
-119
- C2 -
3PFC
7
?
A:
[82-175]
----------------------------------------------------------------------------
D
F
N
G
H
G
D
S
------
D
--
G
K
F----
E
----
N
------
M
T
-
V
L
N
E
I
E
D
--
A
N
A
I
L
N
Y
--
V
---
K
-
T
D
P
HVR
N
I
Y
L
V
G
H
A
Q
G
G
V
V
A
S
M
L
A
G
L
Y
-
P
D
L
I
K
K
V
V
L
L
A
--
P
A
-
A
---
T
L
K
G
D
A
--
L
--
E
-----------
G
N
T
Q
G
V
-----------
T
Y
N
P
D
---
H
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
56.78
30%
-120
- C2 -
3S2Z
6
?
A:
[82-175]
----------------------------------------------------------------------------
D
F
N
G
H
G
D
S
------
D
--
G
K
F----
E
----
N
------
M
T
-
V
L
N
E
I
E
D
--
A
N
A
I
L
N
Y
--
V
---
K
-
T
D
P
HVR
N
I
Y
L
V
G
H
A
Q
G
G
V
V
A
S
M
L
A
G
L
Y
-
P
D
L
I
K
K
V
V
L
L
A
--
P
A
-
A
---
T
L
K
G
D
A
--
L
--
E
-----------
G
N
T
Q
G
V
-----------
T
Y
N
P
D
---
H
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
113
Fugue
56.60
18%
-82
- C2 -
1CQW
2
DHAA_RHOSD
A:
[1-295]
----------IGTGFP
F
D
P
H
Y
V
E
V
LG
E
R
M
H
Y
V
D
V
G
P
RD
G
T
P
V
L
F
L
H
G
N
PTSSYLW
R
N
I
I
P
H
V
A
P
S
-
H
R
----
C
I
A
P
D
L
I
G
M
G
K
S
DKPD-----
L
-----------
D
------
Y
F
-
F
D
D
H
V
R
Y
--
L
D
A
F
I
E
A
--
L
---
G
-
L
E
E
----
V
V
L
V
I
H
D
W
G
S
A
L
G
F
H
W
A
K
R
N
-
P
E
R
V
K
G
I
A
C
M
E
--
F
I
--------------------------------
R
P
-----------
I
P
T
W
D
---
E
W
P
----------
E
F
A
R
E
T
F
Q
A
F
R
T
A
-----
D
V
G
R
E
L
I
I
D
-
Q
N
--
A
F
I
----
E
G
V
L
P
-
K
C
V
V
R
P
L
T
-----------------------------
E
V
E
M
D
H
Y
R
E
P
F
L
K
P
V
D
R
--
E
P
L
W
R
F
P
N
E
I
P
I
A
G
E
P
A
N
I
V
A
L
V
E
A
Y
M
N
W
L
H
Q
SP
V
P
K
L
L
F
W
G
T
PGVLIP
P
A
E
A
A
R
L
A
E
S
LPN
C
K
T
V
D
IGPGLHYLQEDN
P
D
L
I
G
S
E
I
A
R
W
L
P
G
L
ASGLG
105
PsiBlast_CBE
56.53
32%
-107
- C2 -
3KXP
1
AAMHY_RHILO
G:
[99-224]
--------------------------------------------------------------------------
A
V
D
Q
R
G
H
G
L
S
------
D
---------
K
----
P
------
E
T
G
Y
E
A
N
D
Y
A
DD
I
A
G
L
I
R
T
--
L
---
A
-
R
G
H
----
A
I
L
V
G
H
S
L
G
A
R
N
S
V
T
A
A
A
K
Y
-
P
D
L
V
R
S
V
V
A
I
D
FT
P
Y
-
I
ETE
A
L
D
A
L
E
--
A
--
R
VNAGSQLFEDI
K
A
V
E
A
Y
-----------
L
A
G
R
Y
---
P
N
I
----
P
A
D
A
I
R
I
R
A
E
S
G
Y
Q
P
V
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
PsiBlast_CBE
56.34
35%
-107
- C2 -
4UHD
3
?
A:
[52-137]
-----------------------------------------------------------------
E
F
R
----
V
I
V
P
D
L
R
G
F
G
E
S
Q
V
I
---
P
--
G
V
-----
A
------------
T
-
M
E
A
M
A
D
D
--
L
A
G
L
C
N
H
--
L
---
G
L
T
G
K
----
I
V
L
G
G
L
S
M
G
G
Y
V
A
F
A
F
A
R
K
Y
-
R
D
R
L
A
G
L
I
L
C
D
--
T
R
-
A
---
R
P
D
S
P
E
--
A
--
K
-----------
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------