@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0013: (2015-12-18 )
MSASSPAAWRGTLAGLIAFHIFIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFVPLYGMLLNGILKMLPGRPQSNA
Atome Classification :
(15 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....-.....10--.........20--....----...--..30...---------------------.....40........50-.......-..60.....-.--------..70........80.----.-----......90........100.......110....-------...120------........130......-.140---..-.....----150...-....160-....------....170-----...-.....180.......190---....-.--------....200.......210.....---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSAS-SP
A
A
W
R
---
G
T
L
A
G
L
I
A
F
H
---
I
F
I
I
----
I
AS--
N
Y
L
V
QL
P
---------------------
I
T
L
F
GWHTTWGAFSF
P
--
F
I
F
L
AT
D
-
L
T
V
R
L
LGKG-
P
--------
A
R
L
V
I
A
R
V
M
I
P
A
L
I
A
----
S
-----
Y
V
V
S
V
L
F
Q
E
A
A
F
R
G
F
S
A
L
L
E
F
N
T
F
V
A
R
I
S
L
A
S
F
-------
L
A
Y
V
L
-------
G
Q
I
L
D
I
Q
V
F
D
R
L
R
RSRH-WWTA---
P
V
-
A
S
T
I
L
----
G
N
L
L
D
T
-
F
T
F
F
F
V
--
A
F
WR------SDN
P
F
M
------
A
Q
H
-
W
V
E
I
A
T
VDYG
V
K
L
S
I
S
-----
L
L
L
F
-
V
--------
P
L
Y
G
M
L
L
N
G
I
L
K
MLPGRPQSNA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
88.63
18%
-141
* C6 *
4P5W
1
CMC2_HUMAN
A:
[31-394]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
K
R
A
-
D
P
A
E
L
R
---
T
I
F
L
K
Y
A
S
I
E
KNG
E
F
F
M
S
PND
F
V
T
--
R
Y
L
N
I
F
S
QPN
P
K
T
V
E
L
L
S
G
V
V
DQTKDGL
I
S
F
Q
E
F
V
A
F
E
S
V
L
C
A
P
D
A
L
F
M
V
A
F
Q
-
L
F
D
K
A
-
G
K
G
-
E
VT
F
E
D
---
V
K
Q
V
F
G
Q
T
T
I
H
Q
H
I
P
FNWD
S
-----
E
F
V
Q
L
H
F
G
K
E
R
K
R
H
L
T
-
Y
A
E
F
T
Q
F
L
L
E
I
Q
L
E
H
A
-------
K
Q
A
F
V
Q
R
DNART
G
R
V
T
A
I
D
F
R
D
I
M
V
T
I
R
P
-
H
V
L
T
---
P
F
-
V
E
E
C
L
----
V
A
A
A
G
G
-
T
T
S
H
Q
V
S
F
S
Y
F
N
------
G
F
N
S
L
L
N
N
M
E
L
I
R
K
I
-
Y
S
T
L
A
G
T
R
K
D
V
E
V
T
K
E
-----
E
F
V
L
-
A
A
QKFGQVT
P
M
E
V
D
I
L
F
Q
L
A
D
L
Y
E
P
R
G
R
M
T
L
A
D
I
E
R
I
APPNPDHV
G
G
Y
K
L
A
V
A
T
F
A
G
I
E
N
K
FGLYL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
82.41
16%
-164
* C5 *
4ASI
-
ACACA_HUMAN
C:
[1618-2375]
DLLQSKRFQAQSLGTTYIYDIPEMFRQSLIKLWESMSTQAFLPSPPLPSDMLTYTELVLDDQGQLVHMNRLPGGNEIGMVAWKMTFKSPEYPEGRDIIVIGNDITYRIGSFGPQEDLLFLRASELARAEGIPRIYVSANSGARIGLAEEIRHMFHVAWVDPEDPYKGYRYLYLTPQDYKRVSALNSVHCEHVEDEGESRYKITDIIGKEEGIGPENLRGSGMIAGESSLAYNEIITISLVTCRAIGIGAYLVRLGQRTIQVENSHLILTGAGALNKVLGREVYTSNNQLGGIQIMHNNGVTHCTVCDDFEGVFTVLHWLSYMPKSVHSSVPLLNSKDPIDRIIEFVPTKTPYDPRWMLAGR
P
H
P
T
-
Q
K
G
Q
W
L
---
S
---
G
F
F
D
Y
G
---
S
F
S
E
----
I
M
Q
--
P
W
A
---
Q
---------------------
T
V
V
V
G
-
R
A
R
L
G
G
I
P
V
G
--
V
V
A
V
E
T
R
-
T
V
E
L
S
I
P
A
D
-
P
--------
A
N
L
D
S
E
A
K
I
I
Q
Q
A
G
--------------
Q
V
W
F
P
D
S
A
F
K
T
Y
Q
A
I
K
D
F
N
R
E
----------------------------------------------------------------------
G
-
L
P
L
M
V
F
--
A
N
W
R
------
G
F
S
G
G
M
------
K
D
M
-
Y
D
Q
V
L
K
F
G
A
Y
I
V
D
G
L
R
ECCQP
V
L
V
Y
-
I
--------
P
P
Q
A
E
L
R
G
G
S
W
V
V
I
D
S
S
I
N
P
R
H
MEMYADRESRGSVLEPEGTVEIKFRRKDLVKTMRRVDPVYIHLAERLGTPELSTAERKELENKLKEREEFLIPIYHQVAVQFADLHDTPGRMQEKGVISDILDWKTSRTFFYWRLRRLLLEDLVKKKIHNANPELTDGQIQAMLRRWFVEVEGTVKAYVWDNNKDLAEWLEKQLTGVHSVIEENIKCISRDYVLKQIRSLVQANPEVAMDSIIHMTQHISPTQRAEVIRIL
13
Fugue
80.81
12%
-126
* C7 *
4D0Y
7
?
A:
[1-184]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
V
V
N
K
---
G
D
Y
Y
S
I
Q
G
K
Y
---
D
E
I
I
----
V
A
N
--
K
H
-----------------------------
Y
P
L
S
K
D
Y
N
P
G
E
N
P
--
T
A
K
A
E
L
V
-
K
L
I
K
A
M
Q
E
A
-
G
--------
F
P
I
S
D
H
Y
S
G
F
R
-----------------
S
Y
E
T
Q
T
K
L
Y
Q
D
Y
V
N
Q
D
G
K
E
A
A
D
R
Y
S
A
R
P
G
Y
-------
S
E
H
Q
T
-------
G
L
A
F
D
V
I
G
T
D
G
D
L
V
T
-----
E
E
---
K
A
-
A
Q
W
L
L
----
D
H
A
A
D
Y
G
F
V
V
R
Y
L
--
K
G
K
E
------
K
E
T
G
Y
M
------
A
E
E
-
W
H
L
R
Y
V
G
K
E
A
K
E
I
A
E
S
-----
G
L
S
L
-
E
--------
E
Y
Y
G
F
---------
E
G
G
D
Y
V
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
77.39
11%
-154
- C6 -
3C7J
1
?
A:
[1-237]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
A
M
R
K
S
D
R
E
---
A
F
L
S
S
V
L
G
N
E
---
Q
-------
P
P
A
--
H
L
A
R
T
V
I
---------------------
E
E
K
L
R
N
A
I
I
D
G
S
L
P
S
G
--
T
A
L
R
Q
Q
E
-
L
A
T
L
F
G
V
S
R
M
P
--------
V
R
E
A
L
R
Q
L
E
A
Q
S
L
L
R
----
V
E
T
HKG
A
V
V
A
P
L
I
T
E
D
A
V
D
A
Y
A
L
R
I
L
L
E
S
E
A
L
R
L
S
I
P
L
L
D
A
D
D
L
A
A
A
A
S
Y
I
-------
E
Q
L
E
V
E
T
D
F
G
Q
I
G
R
L
N
R
M
F
H
L
S
L
Y
A
K
T
-
H
N
K
R
L
M
---
R
L
V
E
E
G
-
L
N
E
E
E
R
--
F
L
R
F
NLSSMG
L
G
K
L
S
Q
------
D
D
H
-
W
Q
L
L
R
L
A
E
Q
K
A
V
E
P
C
V
-----
E
A
L
Q
-
Y
--------
H
L
N
-
R
G
V
Q
A
V
T
Q
Y
L
Q
S
Q
K
A
G
N
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
72.44
27%
-129
- C7 -
4P6V
1
NQRB_VIBCH
B:
[293-390]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
W
R
I
I
G
G
V
M
I
G
M
I
L
L
S
T
--
L
F
N
V
----
I
G
S
DT
N
A
M
F
N
M
P
--------------------------
W
H
L
V
L
G
G
F
A
F
G
--
M
F
F
M
A
T
D
P
V
S
A
S
F
T
N
S
G
-
K
W
A
Y
G
I
L
I
G
V
M
C
V
L
I
R
V
V
N
P
A
Y
P
E
----
G
-----
M
M
L
A
I
L
F
A
N
L
F
A
P
L
F
D
H
V
V
V
E
R
N
I
K
R
R
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
69.92
10%
-113
- C3 -
4MJ7
1
UTP23_YEAST
A:
[3-159]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
-
R
A
K
S
Y
R
---
K
Q
L
L
V
Y
S
H
T
F
---
K
F
------------------------------------------------------------------------
R
E
-
P
--------
Y
Q
V
L
V
D
N
Q
L
V
L
E
C
N
N
----
S
-----
N
F
N
L
P
S
G
L
K
R
T
L
Q
A
-----
D
V
K
V
M
I
T
Q
C
C
I
Q
A
L
-------
Y
E
T
R
N
-------
D
G
A
I
N
L
A
K
Q
F
E
R
R
R
C
N
H
-
S
F
K
D
---
P
K
S
P
A
E
C
I
----
E
S
V
V
N
I
------------
S
------
G
A
N
K
----------
H
-
R
Y
V
V
A
S
Q
D
I
D
L
R
R
K
L
R
-----
T
V
P
G
-
V
--------
P
L
I
H
L
T
R
S
V
M
V
M
E
P
L
S
T
A
S
A
K
A
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
67.33
7%
-152
- C5 -
1Q3I
3
A:
[1-214]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
M
T
---
V
A
H
M
----
W
F
D
--
N
Q
I
H
E
A
D
---------------------
T
T
T
F
D
K
R
S
P
T
W
T
A
L
S
R
--
I
A
G
L
C
N
R
-
A
V
F
K
R
D
T
A
G
-
D
-----------
A
S
E
S
A
L
L
K
C
I
E
L
----
S
-----
C
G
S
V
R
K
M
R
D
R
N
P
K
V
A
E
I
S
Y
Q
L
S
I
H
E
R
E
D
N
P
Q
S
H
-------
V
L
V
M
K
-------
G
A
P
E
R
I
L
D
-----
R
C
S
S
-
I
L
V
Q
---
G
K
-
E
I
P
L
D
----
K
E
M
Q
D
A
-
F
Q
N
A
Y
L
--
E
L
G
G
------
L
G
E
R
V
L
------
G
F
C
-
Q
L
N
L
P
S
G
K
F
P
R
G
F
K
F
D
-----
T
D
E
L
N
F
--------
P
T
E
K
L
C
F
V
G
L
M
S
M
I
D
H
H
H
H
H
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
38.91
27%
21
- C7 -
4WOL
3
TYOBP_HUMAN
A:
[1-33]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
S
T
V
-
S
P
G
V
L
A
---
G
I
V
V
G
D
L
V
L
T
---
V
L
I
A
----
L
A
V
--
Y
F
L
G
R
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
33.88
38%
-38
- C2 -
3QR8
1
SPIKE_BPP2
A:
[51-91]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
G
R
S
R
T
-
W
W
A
P
---
S
V
-
G
E
Q
V
L
I
L
A
V
G
G
E
L
D
T
--
A
F
V
L
P
--
G
I
Y
S
------
G
D
N
P
S
P
------
S
V
S
-
A
D
A
L
H
I
R
F
P
D
G
A
V
I
E
Y
-----
E
P
E
T
-
S
--------
A
L
T
V
S
G
I
K
T
A
S
V
T
A
S
G
S
V
T
A
T
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
28.30
13%
-37
- C7 -
3AQP
-
SECDF_THET8
A:
[677-726]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
T
L
-
L
P
I
L
A
L
--
L
F
L
G
------
G
-
S
V
--------
L
R
D
-
F
A
L
A
I
F
V
G
I
F
V
G
T
Y
S
S
------
I
Y
V
-
V
--------
S
A
L
V
V
A
W
K
N
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
24.35
11%
-90
- C7 -
3O7Q
1
FUCP_ECOLI
A:
[66-92]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Q
S
A
F
Y
F
G
Y
F
--
I
I
P
I
P
A
G
-
I
L
M
K
K
L
S
Y
K
-
A
--------
G
I
I
T
G
L
F
L
Y
A
L
G
A
A
L
----
F
-----
W
P
A
A
E
I
M
N
Y
T
L
F
L
V
G
L
F
I
I
A
A
G
L
G
C
L
E
T
A
A
N
P
F
-------
V
T
V
L
G
-------
P
E
S
S
G
H
F
R
L
N
L
A
Q
T
F
N
S
-
F
G
A
I
---
I
A
-
V
V
F
G
Q
----
S
L
I
L
S
N
-
V
P
H
Q
S
Q
--
D
V
L
D
------
K
M
S
P
E
Q
------
L
S
A
-
Y
K
H
S
L
V
L
S
V
Q
T
P
Y
M
I
I
-----
V
A
I
V
-
L
--------
L
V
A
L
L
I
M
L
T
K
F
P
A
L
Q
S
D
N
H
S
D
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
22.33
31%
114
- C7 -
2JXF
-
?
A:
[1-30]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
T
N
W
Q
------
K
L
E
V
F
W
------
A
K
H
M
W
N
F
I
S
G
I
Q
Y
L
A
G
L
S
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
20.82
16%
415
- C1 -
1Q8H
-
OSTCN_PIG
A:
[35-44]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
D
C
D
-
E
L
A
D
H
I
G
F
Q
-
E
--------
A
Y
R
R
F
Y
G
I
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
19.32
14%
90
- C4 -
2N1F
-
?
A:
[47-67]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
I
D
L
T
D
-
K
L
V
S
Y
Y
L
E
S
-
Y
--------
G
L
E
L
T
M
T
V
L
R
D
M
G
L
Q
----
E
-----
L
A
E
Q
L
Q
T
T
K
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
5.99
6%
309
- C7 -
1JYO
-
SPTP_SALTY
E:
[85-102]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
-
A
L
T
E
K
Y
G
E
T
-
A
--------
V
N
D
A
L
L
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------