@TOME V2.3
(Nov 2016)

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Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : PA0040: (2015-12-19 )
MALHRLAFIFLCLPLMASAAPFTSPGDRDLIRDRQQRLLDEQRKRLEELQQLPGKGAPAAADASGGDERCFEIRRIELEGAGHLGESARRQLLAPYQGRCLGVGQLNALLKAVTDHYLDRGYVTTRAYLPQQDLASGTLRIIVVEGRLEGLDSSALASPRELTMSFPGRTGELLDLRELEQLVDQLSRLPSRQAQLELVPGSEVGGSRVRLKGERDKPWRVSATRNNDGDVSTGEQQMGLGLDWDSPLGLADQLNLRANRDAVTDRWRHSDSQSLFYSLPWGWWTFTYGYSQSDYRTRNEASGFPFKLDGDSRSHQFRAERVLHRDGVSKTAMSLGLSHQRTNNYVEDTRLEDQSTRITETQLGFNHGRRIGSGFVNLDLGWQQGIGALGAQGRGHPQAGDPNARYDKYSLTLSYLQPFQLWGERFSFDSLATGQRSEDVLFSPQRISLGGNSSVRGFKDQTLTGDSGGYWRNQLRWRRAVEWAPLRPWLQEYGVAFAYDVGVIRHDRYNDGASGRMSGNAIELDARGRYFAASVGFARSLERPSAIERREHPIYFRVDAFF

Atome Classification :

(20 SA) -----...----......10........20........30........40.---.......50....-....60........70-........80..---.----...-..90..---..-.---------...100.......110.......120....-..-.130-.----.----.--.--.--..140.-...---.---.---.150----....-.----..160...-..--..170.......180.....----..----190---.....--..--.---200........210.......220.......230.......240.......250..-.....260.......270---.........280-.........290.--------..-....300.......310.......320-.......330.......340.......-350.......360..----.....370.......380.......390.......400......-.410---........420.......430...-....440.......450.......460....-...470.......480.....--..490........500.......510--------.........520......-.530.......540....----...550.......560
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) -----MAL----HRLAFIFLCLPLMASAAPFTSPGDRDLIRDRQQRLLDEQ---RKRLEELQQLPGK-GAPAAADASGGDERCF-EIRRIELEGAGH---L----GES-ARRQLL---AP-Y---------QGRCLGVGQLNALLKAVTDHYLDRGYVTTR-AY-LPQQ-D----L----A--S--G--TLRIIV-VEG---R---L---EGLD----SSAL-A----SPRELTMS-FP--GRTGELLDLRELEQLVDQLS----RL----PS----RQAQL--EL--V---PG-SEVGGSRVRLKGERDKPWRVSATRNNDGDVSTGEQQMGLGLDWDSPLGLADQL-NLRANRDAVTDRWRHS-----DSQSLFYSLP---WGWWTFTYGYSQS--------DY-RTRNEASGFPFKLDGDSRSHQFRAERV-LHRDGVSKTAMSLGLSHQRTNNYVEDT-RLEDQSTRITETQLG----FNHGRRIGSGFVNLDLGWQQGIGALGAQGRGHPQAGDPNARYDK-YSL----TLSYLQPFQLWGERFSFDSLATGQ-RSEDVLFSPQRISLGGNSSVRGFKDQTLTGD-SGGYWRNQLRWRRAVEWAPLR--PWLQ-EYGVAFAYDVGVIRHDRYN----------DGASGRMSGNAIELDARG-RYFAASVGFARSLERPSA----IERREHPIYFRVDAFF
24 Fugue 59.0119% 121 - C3 -1UIX - ROCK2_BOVIN A:[-2-1045] ---------------------------------TSDVANLANEKEELNNKL---KEAQEQLSRLKDE-EISAAAIKAQFEKQLL-TERTLKTQAVNK---L----AEIMNRK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3 HHSearch 54.9615% -53 - C3 -3Q6B - BAMA_ECOLI A:[266-420] -----------------------------------------------------------------------------------Y-KLSGVEVSGNLA---G----HSA-EIEQLT---KI-E---------PGELYNGTKVTKMEDDIKKLLGRYGYAYPR-VQ-SMPEIN----D----A--D--KTVKLRVNV-DAGNRFY---V---RKIR----FEGNDTS---KDAVLRRE-MR--QMEGAWLGSDLVDQGKERLN----RL----GFF---ETVDT--DT--Q---RVPGSPDQVDVVYKVKE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5 HHSearch 54.9018% -49 - C3 -2QDF - BAMA_ECOLI A:[148-333] ------------------------------------------------------------------------DLKLVFQEGVSA-EIQQINIVGNHA---F----TTD-ELISHF---QLR---------------QKQKLAGDLETLRSYYLDRGYARFN-ID-STQV-S----LTPDKK--G--I--YVTVNI-TEGDQYK---L---SGVE----VSGNLAG---HSAEIEQL-TK--IEPGELYNGTKVTKMEDDIKKLLGRY----GY----AYPRVQSMP--E---IN-DADKTVKLRVNVDAGNRFYVRK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1 PsiBlast_PDB 54.3528% -80 - C3 -2X8X - ? X:[145-221] --------------------------------------------------------------------------------------LRAVQVAGNQV---L----TQE-KVNEIF---AP-Q---------IGRTLNLRELQAGIEKINTFYRDNGYILGQ-VVGTPQV-D---------P--D--G--VVTLQV-AEG---V---V---EQVT----YRFL-N----KEGEPTKQ-RT--RDFVISREMDTQPGVVLNQK----TV----QA----DLRRL--FE--L---GL-FEDVQVALEPGQNPRRVNLILNIKERNT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22 Fugue 53.0015% 0 - C1 -4K3C - ? A:[1-532] YNISEMRIIGDTQKLDNELNQLLTHFKAGQLFRKTELSIIEEQIKQILGDRGYGSAKVDLYPKFNEE-DHTVQINFIVDAGRRI-YVRKIRFEGNDV---T----ADS-TLRREM---RQ-Q---------EGAWLSTSAVSLAKSRLER---TGFYETVE-MS-MPTV-K----N----T--D--D--QVDIIY-------K---I---KERN----T---------GSINFGVG-YG--SGSG--------------LS----YN----AG----ITQDN--FL--G---MG-SSLGLNGSRNTDSTNVNLSYTEPYFTKDGVSLGGNIFYEDYD-NSARKASAAY-KRKTYGASGTLGFPVD-----ENNSYYLGLG---YTHDKLRN--VER--------EY-TREKYVNSMKFPINPQNSHY----DRI-QSAD----FDLSFGWNYNNLNRGYFPT-AGSSANISGKLTLPGSDNKYYQVGTNFSGYIPLNSEHKWVIATKGGLAYTNSFGGKEVPFYQL-YSAGGMGSLRGFAGGSIGPKAIYYREDGFKA-PSQDVI--------GGNAMVNASLELIIPAPFISDKYQHNVRTSVFVDAATVWNTKWKQSKADYPNLPDFGDYKRVRAS----------AGIALQWQSP----------IGPLSFSYAKPIKKYAG----DEIEQ--FQFTVGSTF
28 Fugue 51.469% -26 - C2 -1DLJ UDG_STRPY A:[1-402] ------------MKIAVAGSGYVGLSLGVLLS--------LQNEVTIVDIL---PSKVDKINN------------------------------GLSP---I----QDE-YIEYYL---KS-K---------QLSIKATLDSKAAYKEAE-------------------------------------------LVI-I--------------------------------------A-TP--TNYNSRINYFDTQHVETVIK----EV----LS----VNSHA--TL--I---IK-STI------------------------------------------PIGFITEM-RQKFQTDRIIFSPEFL-----RESKALYDNL---YPSRIIVSCEEND--------SP-KVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDT-YAESRKLNSHMIIQG----ISYDDRIGMHYNNPSFGY--GGYSLPKDTKQLLANYNNIPQTLI-EAI----VSSNNVRKSYIAKQIINVLKEQES-PVKVVGVYRLIMKSNSDNF------------------------RESAIKDVID--ILKS-KDIKIIIYEP---MLNKLE----------SEDQSVLVNDLENFKKQA-NIIVTNRYDNELQDVKNK----VYSRD---IFGRD---
7 HHSearch 51.0917% -33 - C3 -3EFC - BAMA_ECOLI A:[164-349] ------------------------------------------------------------------------DLKLVFQEGVSA-EIQQINIVGNHA---F----TTD-ELISHF---QL-RDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFN-ID-STQV-SLTPDK----K--G--I--YVTVNI-TEGDQYK---L---SGVE----VSGNLAG---HSAEIEQL-TK--IEPGELYNGTKVTKMEDDIK----KLLGRYGY----AYPRV--QSMPE---IN-DADKTVKLRVNVDAGNRFYV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10 HHSearch 51.0416% -43 - C3 -3MC9 - ? A:[217-381] -------------------------------------------------------------------------------TEPRV-LVSEVLVRPQSG---QLTPELET-QVYNVI---RT-Q---------PGRTTTRSQLQEDINAIF----GTGFFSNV-QA-SPED-T----P----L--G--V--RVSFIV-QPNP--V---L---SKVE----IQANP-PSVLPQATADEI-FR--AQYGKILNLRDLQEGIKELT----KRYQDQGY----VLANV--VG--A---PQ-VS-ENGVVTLQVAEGVVE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4 HHSearch 50.1915% -54 - C3 -3MC9 - ? A:[288-381] ------------------------------------------------------------------------RVSFIVQPNPV---LSKVEIQANP-PSVL----PQA-TADEIF---RA-Q---------YGKILNLRDLQEGIKELTKRYQDQGYVLAN-VV-GAPQ-V----S----E--N--G--VVTLQV-AEG---V---V---E--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9 HHSearch 50.0514% -57 - C3 -2QDF BAMA_ECOLI A:[67-252] ------------------------------------------------------------------------TLLVQVKERP---TIASITFSGNKS---V----KDD-MLKQNLEASGV-R---------VGESLDRTTIADIEKGLEDFYYSVGKYSAS-VK-AVVT-P----L----PRNR--V--DLKLVF-QEG---VSAEI---QQIN----IVGNHAF---TTDELISH-FQLR-------QKQKLAGDLETLR----SY----YLDRGYARFNI--DS--TQVSLT-PDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKV-TKMEDDIKKLLGRYGY-----AYPRVQSMPE---INDADKTVKLRVN--------VD-AGNRFYVRK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2 PsiBlast_PDB 46.8223% -27 - C3 -3MC8 - ? A:[316-438] ----------------------------------------------------------------------------------------------------L----PQA-TADEIF---RA-Q---------YGKILNLRDLQEGIKELTKRYQDQGYVLAN-VV-GAPQ-V----S----E--N--G--VVTLQV-AEG---V---V---ENISVRFRNKEG-Q----DVNEQGQP-IR--GRTQDYIITREVELKPGQVF----NR----NT----VQKDL--QR--V---FG-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8 HHSearch 45.8114% -45 - C3 -3EFC - BAMA_ECOLI A:[255-349] ------------------------------------------------------------------------YVTVNITEGDQY-KLSGVEVSGNLA---G----HSA-EIEQLT---KI-E---------PGELYNGTKVTKMEDDIKKLLGRYGYAYPR-VQ-SMPEIN----D----A--DKTV--KLRVNV-DAGNRFY---V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27 Fugue 43.5619% 24 * C2 *4DIM - ? A:[3-400] ------DN----KRLLILGA---------------------GRGQLGLYKA---AKELG-IHTIAGTMPNAHKPCLNLADEISYMDI--------------------S-NPDEVE---QK-----------------VKDLN--LDGAATCCLDTGIVSLA-RI-CDKE-N----L----V--G--L--NEEAAIMCGD---K---YKMKEAFK----KYNV-N----TARHFVVR------------NENELKNALENLK----L---------------------------------------------PVIVKAT--DLIYIAKKEEEAIDGFNE---------TMNLTKRDYCIVEEF-------------IEGYE---FGAQAFVYKNDVLFVMPHGDETYMSHTAVPVGHYVPLDVK------DDIIE-KTKTEVKKAIKALGLN----NCAVNVDMILKDNEVYIIELT----------GRVGANCLPELVEINYGI------------------EYYKMIASM---AISE-NPLVFWSQKSKENKAGLARMIIE-------------------------TEK-SG----------------------ILK-EILNSNAKDDDIVEITFFK----------E-ENDEIKKFENSNDCIG-QIIVKEETLDKCKDKLDV----IINN---INIILK---
17 HHSearch 39.3312% 32 - C3 -2VH1 - FTSQ_ECOLI A:[58-130] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKLV----LTGERHYT--RNDDIRQSILA--LGEPGTFMTQDVNIIQTQIEQ---RL----PWI---KQVSV--RK--Q---W----P--DELKIHLVEYVPIARWNDQHMVDAEGNTFSVPPERTSKQVLPMLYGPE-GSANEVLQGYREMGQM-----LAKDRFTLKE---AAMTARRSWQLTL--------NN-DIKLNLGRGDTMKRLARFVELYPVLQQ-QAQTDGKRISYVDLRYDSGAAVGWAPL-P-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11 HHSearch 36.3118% -19 - C3 -3Q6B - BAMA_ECOLI A:[336-397] ------------------------------------------------------------------------KLRVNVDAGNRF-YVRKIRFEGNDT---S----KDA-VLRREM---RQ-M---------EGAWLGSDLVDQGKERL----NRLGFFET-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21 Fugue 34.2320% 10 - C3 -2LSE - ? A:[1-101] ---------------------------------------MQEERKKLLEKL---EKILDEVTD-----GAPDEARERIEKLAKD-VKDELEEGDAKN---M----IEK-FRDEME---QM-Y---------KDA--PNAVMEQLLEEIEKLLKKAGSLVPRGSY-LEHH-H----H----H--H-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16 HHSearch 32.6913% 32 - C3 -2VH2 - ? A:[57-130] ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P---L---SKLV----VTGERHYT--TNDDIRQA-ILS-LGAPGTFMTQDVNIIQQQIE----RL----PWI---QQASV--RK--Q---W----PD--ELKIHLVEYVPFARWNDLHMVDEQGRSFSVPSERVGKQKLPLLYGPE-GSEQDVLEGYRAINKV-----LAANKYQLKM---VAMSARHSWQLAL--------DN-DVRLELGRDDRMGRLQRFIELYPMLQQ-PDKRVSYVDLRYETGAAIGWAPVFIG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15 HHSearch 22.5514% 34 - C4 -2K0L - OMPA_KLEPN A:[107-192] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DLDIYTRLGGMVWRADSKGNYASTGVSRSEHDTGVSPVFAGGVEWAVTRDIATRLEYQWVNNIGDAGTVGTRPDNGMLSLGVSYRF
26 Fugue 21.3230% 240 * C3 *1YYB - PDCD5_HUMAN A:[1-26] -----------------------------------------SADEELEALR---RQRLAELQAKHGD-PGD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25 Fugue 19.9028% 80 - C3 -4O66 SMAL1_MOUSE A:[10-76] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FLRGACIKTGDRFRVKIGYNQELIAVFKSLPSRHYDSFTKTWDFSMS--------DY-RALMKAVERLSTVSLKPL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------