@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0052: (2015-12-19 )
MDLRPSHVHVFPPSRDLPAATSPHRETLLRSGCAWNGSLYLGYPLGQPQLTVQRLSLAAHERLDWQVHPMPSALYVLKGELRLETRDGAQSTRVLEGEAAGCLMNIIHRLIAGAEPVEALLFHAGVEGMPVGLGERGEMPDA
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40-........50....-....60--------..--.....------.-------70....-....-----.-------80...-...---.-.90--.---------------------........100.......-110..--.--.....120.......130.......--140.--------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDLRPS
H
V
H
V
FPPSRDLPAATS
P
H
R
E
T
L
L
RSGCAWNG
S
L
Y
L
-
G
YPLGQP
Q
L
T
V
Q
R
L
-
S
L
A
AHE--------RL--
D
W
Q
VH------P-------M-P
S
A
L
-
Y
V
L
K
-----
G
-------
E
L
R
L
E-TRD---G-AQ---S---------------------
T
R
VLEGE
A
A
G
C
L
M
N
I
I
H
R
-LI-AG--A--
E
P
V
E
A
L
L
F
HAGVEGMPVGLGERGEM--P-DA--------------------------------------------------------
29
Fugue
84.25
15%
-51
- C2 -
1JUH
8
QDOI_ASPJA
A:
[3-350]
SSLIVEDAPD
H
V
R
P
Y
V
I
R
HYSHAR
A
V
T
V
DT
Q
L
Y
R
F
YVTGPSSGYA
F
T
L
M
G
T
N
A
P
HSDALGV
L
P
H
I
H
QK
H
Y
E
N
F
Y
C
N
K
G
S
F
Q
L
W
A
Q
S
GNE
T
Q
Q
T
R
V
L
S
SG
D
Y
G
S
V
P
R
N
V
T
H
T
F
Q
I
Q
D
PD
T
E
M
T
G
V
I
V
PGGFE
D
L
F
Y
Y
L
GTNATDTTHTPYIPSISTLQSFDVYAELSFTPRTDTVNGTAPAN
T
V
W
H
T
G
A
N
A
L
A
S
T
A
G
D
P
Y
F
I
A
N
G
W
G
P
K
Y
L
N
S
Q
---
Y
G
Y
Q
I
V
-
A
P
F
V
T
A
T
Q
A
Q
D
T
N
Y
-
T
L
S
T
I
S
M
S
T
TPSTV
T
V
--
P
T
W
S
F
------
P
-------
G
-
A
C
A
F
-
Q
V
Q
E
-----
G
-------
R
V
V
V
Q
-
I
G
D
---
Y
--
A
---
A
---------------------
T
E
L
G
S
G
D
V
A
F
I
P
G
G
V
E
F
K
-
Y
Y
-
S
E
--
A
--
Y
F
S
K
V
L
F
V
S
S
G
S
D
G
L
D
Q
N
L
V
N
G
G
E
E
--
W
-
S
S
VSFPADW-------------------------------------------------
33
Fugue
75.28
18%
-23
- C2 -
2BVB
-
A:
[1-137]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KT
E
I
H
G
D
S
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K
A
T
L
E
E
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Q
Q
L
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L
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A
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C
H
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L
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A
N
F
L
-
D
G
-----
F
L
K
F
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T
G
-
S
N
S
A
F
D
--------
V
V
--
E
V
E
E
P
------
A
-------
G
-
P
A
V
L
-
T
I
G
L
-----
G
H
K
G
R
L
A
V
V
L
D
Y
T
-
R
L
N
---
A
-
A
L
---
G
---------------------
S
A
A
Y
V
V
E
D
S
G
C
S
------------------
S
S
E
E
V
S
F
Q
G
V
G
S
G
A
T
L
V
V
T
T
L
G
E
S
--
P
-
T
A
VSA-----------------------------------------------------
28
Fugue
72.57
20%
-70
- C2 -
2EO1
-
A:
[1-102]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
G
S
S
G
K
V
V
F
A
K
E
Q
------
P
A
H
R
E
V
Q
A
E
A
G
----------------------------
A
S
A
--------
T
L
--
S
C
E
V
A
------
Q
-------
A
-
Q
T
E
V
-
T
W
Y
K
-----
D
-------
G
K
K
L
S
-
S
S
S
---
K
-
V
R
---
V
---------------------
E
A
V
------
G
C
T
R
R
L
V
V
Q
-
Q
--
A
G
--
Q
--
A
E
A
G
E
Y
S
C
E
A
G
G
Q
Q
L
S
F
R
L
Q
V
A
G
Q
C
--
F
-
G
---------------------------------------------------------
19
HHSearch
71.02
23%
-90
- C2 -
1VJ2
2
?
A:
[46-123]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
F
V
M
R
L
F
-
T
V
E
P
G
G
--------
L
I
--
D
R
H
S
H
------
P
-------
W
-
E
H
E
I
-
F
V
L
K
-----
G
-------
K
L
T
V
L
--
K
E
-----
Q
G
---
E
---------------------
E
T
V
E
E
G
F
Y
I
F
V
E
P
N
E
I
H
G
F
R
N
-
D
T
--
D
--
S
E
V
E
F
L
C
L
I
P
K
E
G
G
E
------------------------------------------------------------------------
13
HHSearch
68.94
11%
-75
- C2 -
2Y0O
4
DLYKI_BACSU
A:
[50-157]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
R
Y
C
S
K
E
L
-
V
L
F
P
G
Q
--------
T
C
--
P
E
H
R
H
------
P
PVDGQE
G
K
-
Q
E
T
F
-
R
C
R
Y
-----
G
-------
K
V
Y
L
Y
--
V
E
-----
G
E
---
K
TPLPKVLPPQEDREHYTVWH
E
I
E
L
E
P
G
G
Q
Y
T
I
P
P
N
T
K
H
W
F
Q
A
-
G
E
--
E
---
G
A
V
V
T
E
M
S
S
T
S
T
D
K
H
D
I
F
T
D
P
R
I
L
--
E
-
H
H
--------------------------------------------------------
30
Fugue
66.51
17%
0
* C2 *
2OA2
-
?
A:
[158-288]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
D
H
G
P
R
P
F
V
V
N
I
E
D
E
T
K
R
N
R
A
F
R
R
A
L
W
T
-
G
---
D
H
L
Q
V
T
L
---
M
S
I
Q
V
G
E
--------
D
I
--
G
L
E
I
H
------
P
H------
L
-
D
Q
F
L
-
R
V
E
E
-----
G
-------
R
G
L
V
Q
M
G
H
R
---
Q
-
D
N
LH
F
Q
---------------------
E
E
V
F
D
D
Y
A
I
L
I
P
A
G
T
W
H
N
-
V
R
N
T
G
--
N
--
R
P
L
K
L
Y
S
I
Y
A
P
P
Q
H
P
H
G
T
V
H
E
T
K
A
I
--
A
M
A
A
--------------------------------------------------------
32
Fugue
65.99
18%
-47
- C1 -
4F0D
1
PAR16_HUMAN
A:
[2-271]
--------------------------------------------------------------------------------------------------------------------------------------------MG
W
A
A
A
R
E
A
A
G
R
D
M
L
A
A
D
L
R
C
S
L
F
A
S
A
L
Q
SYKRDSVLRPFP
A
S
Y
A
R
G
D
C
K
D
F
E
A
L
L
A
D
A
S
K
L
P
N
L
K
E
L
L
Q
S
S
G
D
N
H
K
R
A
W
D
L
V
S
W
I
L
S
S
K
V
L
T
I
H
S
A
-
G
K
A
E
F
E
--------
K
I
--
Q
K
L
T
G
APH
T
P
V
P
-------
A
-
P
D
F
L
-
F
E
I
E
Y
F
D
P
A
N
-------
A
K
F
Y
E
-
T
K
G
---
E
-
R
D
---
L
---------------------
I
Y
A
F
H
G
S
R
L
E
N
F
H
S
I
I
H
N
---------------------
G
L
H
C
H
K
T
S
L
F
G
E
G
T
Y
L
T
S
-
D
L
S
L
A
L
I
Y
S
P
H
G
H
G
W
QHSLLGP
I
L
S
C
V
A
V
C
E
V
IDHPDK
Y
F
V
V
TNNQL
L
R
V
K
Y
L
L
V
Y
S
Q
9
HHSearch
65.88
19%
-70
- C2 -
1V70
-
?
A:
[25-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
R
M
L
Y
D
L
Y
-
A
L
L
P
G
Q
--------
A
Q
--
K
V
H
V
H
------
E
-------
G
S
D
K
V
Y
-
Y
A
L
E
-----
G
-------
E
V
V
V
R
--
V
G
-----
E
E
---
E
---------------------
A
L
L
A
P
G
M
A
A
F
A
P
A
G
A
P
H
G
V
R
N
-
E
S
--
A
--
S
P
A
L
L
L
V
V
T
A
P
R
P
--------------------------------------------------------------------------
12
HHSearch
63.59
19%
-112
- C- -
3H8U
1
?
A:
[36-116]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
N
D
S
V
V
V
V
W
-
H
A
H
P
G
Q
--------
E
I
--
A
S
H
V
H
------
P
H------
G
-
Q
D
T
W
-
T
V
I
S
-----
G
-------
E
A
E
Y
H
--
Q
G
---
N
-
G
I
---
V
---------------------
T
H
L
K
A
G
D
I
A
I
A
K
P
G
Q
V
H
G
A
M
N
-
S
G
--
P
--
E
P
F
I
F
V
S
V
V
A
P
G
N
A
G
F
A
L
A
E
K
------------------------------------------------------------------
6
HHSearch
62.77
18%
-79
- C2 -
3FJS
-
?
A:
[32-108]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
H
R
L
E
V
M
R
M
-
V
L
P
A
G
K
--------
Q
V
--
G
S
H
S
V
------
A
-------
G
-
P
S
T
I
-
Q
C
L
E
-----
G
-------
E
V
E
I
G
--
V
D
-----
G
A
---
Q
---------------------
R
R
L
H
Q
G
D
L
L
Y
L
G
A
G
A
A
H
D
V
N
A
-
I
T
--
N
--
T
S
L
L
V
T
V
V
L
V
-----------------------------------------------------------------------------
23
HHSearch
62.75
18%
-73
- C2 -
3CJX
2
?
A:
[41-119]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
L
M
V
M
R
A
-
S
F
A
P
G
L
--------
T
L
--
P
L
H
F
H
------
T
-------
G
-
T
V
H
M
-
Y
T
I
S
-----
G
-------
C
W
Y
Y
T
--
E
Y
-----
P
----
G
---------------------
Q
K
Q
T
A
G
C
Y
L
Y
E
P
G
G
S
I
H
Q
F
N
T
-
P
R
--
D
NE
G
Q
T
E
V
I
F
M
L
S
G
C
N
V
N
F
T
Q
D
G
T
Y
L
G
L
--
S
-
D
A
--------------------------------------------------------
15
HHSearch
61.57
16%
-52
- C2 -
1O4T
2
OXBP_THEMA
A:
[56-131]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
L
F
A
R
M
-
K
L
P
P
G
S
--------
S
V
--
G
L
H
K
H
------
E
G------
E
-
F
E
I
Y
-
Y
I
L
L
-----
G
-------
E
G
V
F
H
--
D
N
-----
G
K
---
D
---------------------
V
P
I
K
A
G
D
V
C
F
T
D
S
G
E
S
H
S
I
E
N
-
T
G
--
N
--
T
D
L
E
F
L
A
V
I
I
L
L
---------------------------------------------------------------------------
14
HHSearch
61.50
14%
-64
- C2 -
1DGW
-
?
A:
[39-122]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
D
Y
R
V
L
E
Y
-
C
S
K
P
N
T
--------
L
L
--
L
P
H
H
S
------
D
-------
S
-
D
L
L
V
-
L
V
L
E
-----
G
-------
Q
A
I
L
V
--
L
V
N
PD
G
-
R
D
---
T
---------------------
Y
K
L
D
Q
G
D
A
I
K
I
Q
A
G
T
P
F
Y
L
I
N
-
P
D
N-
N
--
Q
N
L
R
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L
K
F
A
I
T
F
R
R
P
G
T
V
E
D
F
F
L
S
S
--
T
-
K
R
--------------------------------------------------------
11
HHSearch
60.48
15%
-70
- C2 -
1RC6
-
ALLE_ECOLI
A:
[1056-1136]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
S
F
V
D
Y
L
V
-
T
L
H
Q
N
G
--------
G
N
QQ
G
F
G
G
E
------
G
-------
I
-
E
T
F
L
-
Y
V
I
S
-----
G
-------
N
I
T
A
K
--
A
E
-----
G
K
---
T
---------------------
F
A
L
S
E
G
G
Y
L
Y
C
P
P
G
S
L
M
T
F
V
N
-
A
Q
--
A
--
E
D
S
Q
I
F
L
Y
K
R
R
Y
---------------------------------------------------------------------------
20
HHSearch
60.04
16%
-74
- C2 -
3EBR
4
?
A:
[40-117]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
G
E
T
I
T
L
L
-
K
A
P
A
G
M
--------
E
M
--
P
R
H
H
H
------
T
-------
G
-
T
V
I
V
-
Y
T
V
Q
-----
G
-------
S
W
R
Y
K
--
E
H
----------
D
---------------------
W
V
A
H
A
G
S
V
V
Y
E
T
A
S
T
R
H
T
P
Q
S
-
A
Y
AE
G
--
P
D
I
I
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F
N
I
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A
G
E
L
L
Y
L
D
D
K
D
N
I
I
A
V
--
E
-
N
W
--------------------------------------------------------
7
HHSearch
60.00
15%
-73
- C2 -
3HT1
1
?
A:
[36-118]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
R
F
V
L
T
E
F
-
E
V
S
P
N
G
--------
S
T
--
P
P
H
F
H
------
E
-------
W
-
E
H
E
I
-
Y
V
L
E
-----
G
-------
S
M
G
L
V
--
L
P
---
D
Q
G
R
---
T
---------------------
E
E
V
G
P
G
E
A
I
F
I
P
R
G
E
P
H
G
F
V
T
-
G
P
--
G
--
Q
T
C
R
F
L
V
V
A
P
C
E
R
P
P
V
R
N
V
F
L
S
E
D
P
--
Y
-
E
Y
--------------------------------------------------------
18
HHSearch
59.07
13%
-64
- C2 -
3IBM
2
?
A:
[53-137]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
A
F
E
T
R
Y
F
-
E
V
E
P
G
G
--------
Y
T
--
T
L
E
R
H
------
E
-------
H
-
T
H
V
V
-
M
V
V
R
-----
G
-------
H
A
E
V
V
--
L
D
-----
D
R
---
V
---------------------
E
P
L
T
P
L
D
C
V
Y
I
A
P
H
A
W
H
Q
I
H
A
-
T
G
A-
N
--
E
P
L
G
F
L
C
I
V
D
S
D
R
D
R
P
Q
R
P
D
A
D
D
L
A
--
R
-
M
C
--------------------------------------------------------
3
HHSearch
58.45
13%
-83
- C2 -
2FQP
2
?
A:
[16-96]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
V
K
V
T
E
W
-
R
F
P
P
G
G
--------
E
T
--
G
W
H
R
H
------
S
-------
M
-
D
Y
V
V
V
P
M
T
T
-----
G
-------
P
L
L
L
E
--
T
P
---
E
-
G
S
V
--
T
---------------------
S
Q
L
T
R
G
V
S
Y
T
R
P
E
G
V
E
H
N
V
I
N
-
P
S
--
D
--
T
E
F
V
F
V
E
I
E
I
K
A
---------------------------------------------------------------------------
21
HHSearch
58.18
13%
-89
- C2 -
1SEF
-
?
A:
[59-138]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
T
F
V
D
Y
I
A
-
T
F
H
K
N
G
--------
Q
Q
T
T
G
F
G
G
D
------
G
-------
I
-
Q
T
L
V
-
Y
V
I
D
-----
G
-------
R
L
R
V
S
--
D
G
-----
Q
E
---
T
---------------------
H
E
L
E
A
G
G
Y
A
Y
F
T
P
E
M
K
M
Y
L
A
N
-
A
Q
--
E
--
A
D
T
E
V
F
L
Y
K
K
R
Y
Q
P
L
A
G
H
Q
P
Y
K
V
V
G
--
S
-
I
H
--------------------------------------------------------
10
HHSearch
57.41
16%
-55
- C2 -
2GU9
-
?
A:
[18-100]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
Q
V
Q
A
A
E
M
-
V
I
A
P
G
D
--------
R
E
G
G
P
D
N
R
H
------
R
-------
G
A
D
Q
W
L
-
F
V
V
D
-----
G
-------
A
G
E
A
I
--
V
D
-----
G
H
---
T
---------------------
Q
A
L
Q
A
G
S
L
I
A
I
E
R
G
Q
A
H
E
I
R
N
-
T
G
--
D
--
T
P
L
K
T
V
N
F
Y
H
P
P
A
Y
D
A
Q
G
E
P
L
P
A
G
E
--------------------------------------------------------------