@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0061: (2015-12-20 )
MRPLTRLVPLALLLLAGCAGPLPQPDPQMAWVELRSAPANTLLAERLDGERLSDGRYFQVTPGRHVLEVRFQYELYGGSGGGGGGFGEPVQINCYQQVVYDGFEAGRRYRLEVRPQLRRALALLSDERGEVVARSNFQTSRCPPY
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.....-...30--.-.......40..-......---50.....--...60.......-----.70........80..--......90.-.------.--.....100...-..-----------..110-----.-------..------.------...-----.120--------.......130..-.....140-...---------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR
P
L
T
R
L
V
P
L
A
L
L
L
L
AGCAGPLPQPD-P
Q
M
A
W
--
V
-
E
LRSAPA
N
T
L
L
-
A
E
RLDG---ERLSDG
R
--
Y
F
Q
VTPG
R
H
V
L
E
-----
V
R
F
Q
Y
E
L
YGGSGGGG--GGFGE
P
V
Q
I
-
N
------
C
--
Y
Q
Q
V
V
Y
D
G
F
E
A-G
R
-----------
R
Y
R
L
------E-------V
R
------
P
------
Q
L
R
-----
R
A
L
A
--------
L
L
SDERG
E
V
V
A
R-SNFQTSRC-PPY---------------------------
29
Fugue
80.89
23%
-51
* C9 *
1PYS
-
SYFB_THET8
B:
[191-399]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LK
A
E
A
L
P
L
P
F
A
L
K
V
EDPEGAP
H
F
T
L
G
Y
A
F
G
L
R
V
A
P
S
P
L
W
M
Q
R
A
L
F
A
A
G
M
R
P
I
N
N
V
V
D
V
T
N
Y
V
M
L
E
R
A
Q
P
M
H
A
F
D
-
L
R
F
V
G
E
G
I
-
A
V
R
R
A
R
E
G
E
R
L
-
K
T
L
D
G
V
---
E
R
T
L
H
P
E
--
D
L
V
I
A
G
W
R
G
--
E
-----
E
S
F
P
L
G
L
A
G
V
M
G
G
A
E
--
S
E
V
R
E
D
T
E
A
-
I
------
A
--
L
E
V
A
C
F
D
P
V
S
I
-
R
K
T
A
R
R
H
GLRT
E
A
S
H
R
F
------
E
R
GVDPLG
Q
V
------
P
------
A
Q
R
-----
R
A
L
S
--------
L
L
Q
A
L
A
G
A
R
V
A
E
-
A
L
L
E
A
G
S
P
-
K
P
P
---------------------------
28
Fugue
79.39
18%
-89
- C3 -
1VCP
1
POLS_SFV
A:
[1-149]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
I
F
E
V
K
H
EGK
V
T
G
Y
A
C
L
V
G
D
K
V
M
K
P
A
H
V
K
G
V
I
D
--
N
-
A
D
L
A
K
--
L
-
A
F
K
K
S
S
K
Y
D
L
E
-
C
A
Q
I
P
V
---
H
M
R
S
D
A
S
--
K
Y
T
H
E
K
P
E
G
H
Y
N
W
HH
G
A
V
Q
Y
S
G
G
R
F
T
I
P
T
G
A
G
KP
G
D
S
G
R
P
I
F
D
-
N
------
K
GR
V
V
A
I
V
L
G
G
A
N
E
-
G
S
----------------------------------------------
R
-----
T
A
L
S
--------
V
V
T
W
N
K
-
D
M
V
T
R
-
V
T
P
E
G
S
---
E
E
W
---------------------------
32
Fugue
76.62
11%
-53
- C2 -
2G9T
2
R1A_CVHSA
A:
[9-129]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
N
S
T
V
L
S
F
C
A
F
----------
A
V
D
-
P
A
K
A
Y
--
K
-
D
Y
L
A
S
G
G
Q
P
I
T
N
C
V
K
M
L
C
---
T
H
T
G
T
G
Q
--
A
I
T
V
T
P
-----
E
-----
A
N
M
D
Q
E
S
F
G
G
-----------
A
S
C
C
L
-
Y
------
C
--
R
C
H
I
D
H
P
N
F
C
D
-
L
K
-----------
G
K
Y
V
------
Q
-------
I
P
------
T
------
T
C
A
-----
N
D
P
V
--------
G
F
T
L
R
N
T
V
C
T
V
C
-
G
M
W
K
G
Y
G
C
-
S
-----------------------------
25
Fugue
74.42
13%
-66
- C8 -
1OF5
1
MTR2_YEAST
B:
[14-178]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
Q
A
Q
I
T
A
T
F
T
K
K
I
L
A
H
L
D
D
P
D
-
S
N
L
A
Q
--
F
-
V
Q
L
F
N
P
N
C
R
I
I
-
F
---
N
A
---
T
P
F
A
Q
A
T
--
V
F
L
Q
M
W
Q
N
Q
V
V
Q
-----
T
Q
H
A
L
T
G
V
D
Y
H
A
I
P
G
--
S
G
---
T
L
I
C
-
N
------
V
--
N
C
K
V
R
F
D
------
W
-----------
G
P
Y
F
------
G
-------
I
S
------
L
------
Q
L
I
-----
I
D
D
R
--------
I
F
R
N
D
F
N
G
V
I
S
G
-
F
N
Y
N
M
V
Y
K
-
P
E
----------------------------
30
Fugue
72.45
14%
-41
- C8 -
4B9G
-
CSSA1_ECOLX (first)
A:
[16-161]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D
I
D
S
A
V
R
I
I
P
V
N
Y
-------
D
S
D
P
K
L
N
-
S
Q
L
Y
T
--
V
-
E
M
T
I
P
A
G
V
S
A
V
-
K
I
V
P
T
D
---
S
L
T
S
S
G
Q
--
Q
I
G
K
L
V
N
V
N
N
P
D
-----
Q
N
M
N
Y
Y
I
R
K
D
S
G
A
G
K
FM
A
G
Q
K
G
S
F
S
V
-
K
------
E
--
N
T
S
Y
T
F
S
A
I
Y
T
-
G
G
-----------
E
Y
P
N
SGY
S
S
G
T
-------
Y
A
------
G
------
H
L
T
-----
V
S
F
Y
--------
S
N
D
N
K
Q
R
T
E
I
A
T
-
K
N
F
P
V
S
T
T
-
I
S
----------------------------
34
Fugue
71.46
23%
-57
- C5 -
4OO2
1
?
A:
[18-527]
TRPLT
G
E
E
Y
L
E
S
L
RDA
R
E
V
Y
L
DGSRVKDVTAHPAF
H
N
P
A
R
M
T
A
R
L
Y
D
S
L
H
DPAQKAVLTAPTDAGDGFTHRFFTAPRS
V
D
D
L
V
K
D
Q
A
A
I
A
S
W
A
R
K
S
YGWMGRSPDYKA
S
F
L
G
T
LGANADFYEPF
A
D
N
A
R
R
W
Y
R
E
S
Q
E
K
V
L
Y
W
N
H
AFLHPPVDRSEVGDVFIHVERETDA
G
L
V
V
S
G
A
K
V
VATGSALTH
A
A
F
I
S
H
WGLPIKDRKFA
L
V
A
T
V
P
MDADG
L
K
V
I
C
R
PS
Y
S
A
N
A
A
T
TGSPFDNPLSSRLDEND
A
I
L
V
L
D
Q
V
L
I
P
WENVFVYGN
L
G
K
V
H
L
LAGQSG
M
I
E
R
A
T
F
H
G
C
T
R
L
A
V
K
L
E
F
I
A
G
L
L
A
K
A
L
D
I
T
GAKDF
R
G
V
Q
T
R
L
G
E
V
L
A
W
R
N
L
F
W
S
L
S
D
A
A
A
R
N
P
V
P
W
K
N
G
T
L
L
-------
P
N
P
Q
A
G
M
A
-
Y
R
W
--
F
M
Q
I
G
Y
P
R
V
L
E
I
V
-
Q
Q
D
V
A
S
GLM
Y
V
N
S
S
T
E
--
D
F
R
N
P
E
T
G
P
Y
L
E
-----
K
Y
L
R
-------
G
S
D
G
--
A
G
A
V
E
R
V
K
V
M
K
------
L
--
L
W
D
A
V
--
G
S
D
F
-
G
G
-----------
R
H
E
L
------
Y
-------
E
R
N
Y
SGN
H
E
------
N
T
R
-----
I
E
L
L
--------
L
S
Q
T
A
S
G
K
L
D
S
Y
M
D
F
A
Q
A
--
C
M
D
E
Y
DLDGWTAPDLESF
H
A
M
R
S
A
S
R
D
L
LGGL
26
Fugue
68.14
15%
-42
- C8 -
4FTF
6
?
A:
[1-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
M
A
-
E
K
Q
R
N
--
L
-
E
L
L
A
G
N
R
A
S
L
L
-
S
T
E
L
P
----
L
E
F
G
P
L
N
--
I
L
R
A
T
A
K
G
S
T
V
E
-----
L
M
M
V
Y
N
T
D
A
N
N
A
K
P
T
--
E
Q
V
L
Q
S
A
V
S
-
S
F
-----
C
--
A
N
K
D
I
R
S
N
L
D
V
-
G
I
-----------
S
Y
R
I
------
Q
-------
M
R
------------------------------------
N
T
R
G
Q
L
M
A
D
-
Q
L
V
T
K
E
S
C
-------------------------------
27
Fugue
58.23
26%
-50
* C8 *
4H4N
5
?
A:
[6-67]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
P
I
--
A
F
K
V
P
P
N
-
S
K
L
K
-----
V
T
F
F
-------
G
P
Y
N
--
E
V
I
T
N
V
S
I
I
-
N
QLS
T
P
K
C
--
Q
T
I
T
R
Y
P
N
Y
----
T
-----------
K
Y
E
T
------
E
-------
V
R
------
S
------
L
S
S
-----
C
---------------------------------------------------------------
31
Fugue
54.02
17%
-4
- C9 -
2K19
-
?
A:
[1-98]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
K
L
-----------------------
K
W
F
S
G
--
G
-
K
E
R
S
N
Q
A
E
N
I
I
-
T
D
L
L
D
D
---
L
K
T
D
L
D
-------
N
E
S
L
K
K
V
L
-----
E
N
Y
L
E
E
L
K
Q
K
S
A
-------------------------------
S
V
P
L
I
-
L
S
-----------
R
M
N
L
------
D
-------
I
S
------
K
------
A
I
R
-----
N
D
G
V
--------
T
L
S
D
Y
Q
S
K
K
L
K
E
-
L
T
S
I
S
N
I
R
-
Y
G
Y
---------------------------
10
HHSearch
41.38
16%
-38
- C7 -
1SMP
-
INH_DICCH
I:
[20-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
Q
-
H
------
C
--
D
I
R
L
N
T
D
V
L
D
G
--
T
-----------
T
W
K
L
------
A
-------
G
D
------
T
ACLQKL
L
P
E
-----
A
P
V
G
WRPTPDGL
T
L
T
Q
A
D
G
S
A
V
A
F
-
F
S
R
N
R
D
R
Y
-
E
H
K
---------------------------
18
HHSearch
37.71
17%
12
- C7 -
3BBJ
-
?
A:
[216-267]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-
T
------
V
--
E
L
T
W
H
L
R
A
I
P
E
-
P
G
-----------
P
L
A
F
------
R
-------
S
T
------
C
------
A
L
V
SDG
W
F
D
E
N
V
--------
D
L
W
D
A
R
G
R
L
V
A
Q
-
S
R
Q
L
A
R
V
G
-
R
-----------------------------
12
HHSearch
36.19
25%
16
- C7 -
2YH5
1
A:
[74-105]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
S
G
-----------
D
Y
K
L
------
Q
-------
V
G
------
D
------
L
D
N
-----
R
S
S
L
--------
Q
F
I
D
P
K
G
H
T
L
T
Q
-
S
Q
N
D
A
L
V
A
-
V
F
Q
---------------------------
13
HHSearch
34.41
13%
-4
- C7 -
3JQW
-
?
A:
[47-79]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
P
G
-----------
E
V
K
I
------
D
-------
I
N
------
K
------
L
G
Y
G
----
G
A
T
W
--------
V
V
Y
D
E
N
N
N
A
V
S
Y
-
A
T
D
D
G
Q
N
L
-
S
G
K
---------------------------
6
HHSearch
32.02
12%
-27
* C7 *
1JIW
-
INH_PSEAE
I:
[15-80]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
--
T
L
Q
Q
D
E
A
P
A
-
I
------
C
--
H
L
E
L
R
D
S
E
V
A
E
-
A
S
-----------
G
Y
D
L
------
G
-------
G
D
TACLTR
W
------
L
P
S
-----
E
P
R
A
WRPTPAGI
A
L
L
E
R
G
G
L
T
L
M
L
-
L
G
R
Q
G
E
G
D
-
Y
R
V
---------------------------
3
PsiBlast_PDB
29.41
57%
-34
- C11 -
1MRR
-
RIR2_ECOLI
A:
[19-37]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
Q
P
V
Q
V
-
A
------
R
--
Y
D
Q
Q
K
Y
D
I
F
E
K
-
L
I
-----------
E
K
Q
L
------
S
-------
F
F
------
W
------
R
P
E
-----
E
V
D
V
--------
S
R
D
R
I
D
Y
Q
A
L
P
E
-
H
E
K
H
I
F
I
S
-
N
L
K
---------------------------
4
PsiBlast_PDB
28.78
57%
-43
- C11 -
1RIB
-
RIR2_ECOLI
A:
[19-37]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
Q
P
V
Q
V
-
A
------
R
--
Y
D
Q
Q
K
Y
D
I
F
E
K
-
L
I
-----------
E
K
Q
L
------
S
-------
F
F
------
W
------
R
P
E
-----
E
V
D
V
--------
S
R
D
R
I
D
Y
Q
A
L
P
E
-
H
E
K
H
I
F
I
S
-
N
L
K
---------------------------
2
PsiBlast_PDB
27.69
57%
-17
* C11 *
1RNR
-
RIR2_ECOLI
A:
[19-35]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
Q
P
V
Q
V
-
A
------
R
--
Y
D
Q
Q
K
Y
D
I
F
E
K
-
L
I
-----------
E
K
Q
L
------
S
-------
F
F
------
W
------
R
P
E
-----
E
V
D
V
--------
S
R
D
R
I
D
Y
Q
A
L
P
E
-
H
E
K
H
I
F
I
S
-
N
L
K
---------------------------
22
HHSearch
27.68
18%
12
* C10 *
2YXY
-
?
A:
[55-77]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
P
A
D
F
H
P
-
G
E
-----------
I
Y
E
I
------
E
-------
G
A
P-----
G
------
E
Y
F
-----
K
V
R
Y
--------
L
K
G
V
F
A
W
G
W
R
L
K
-
G
N
G
E
E
E
A
L
-
P
I
S
---------------------------
17
HHSearch
26.66
13%
12
- C7 -
2Z4T
2
?
A:
[94-124]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
N
G
V
S
N
K
G
E
-----------
K
Y
I
T
------
K
-------
V
T
------
L
------
N
V
V
-----
A
P
S
L
--------
E
V
Y
V
D
H
A
S
L
P
T
L
-
Q
Q
L
M
D
I
I
K
-
S
E
E
---------------------------
1
PsiBlast_PDB
26.62
43%
32
- C4 -
1P49
2
STS_HUMAN
A:
[307-341]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
E
---
L
R
L
A
N
D
T
L
I
Y
F
T
S
D
Q
G
A
H
V
E
E
-----
V
S
S
K
G
E
I
H
G
G
S
N
G
I
Y
--
K
G
G
K
A
N
N
W
E
-
G
------
G
--
I
R
V
P
G
I
L
R
W
P
R
-
V
I
-----------
Q
A
G
Q
------
K
-------
I
D
------
E
------
P
T
S
-----
N
M
D
I
--------
F
P
T
V
A
K
L
A
G
A
P
L
-
P
E
D
R
I
I
D
G
-
R
D
L
---------------------------