@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0076: (2015-12-20 )
MNSVGFYGKLAGRGDFVSRGLPNTFVEPWDAWLASGMRASQDELGAAWLDAYLTSPLWRFAIAPGLLGGEAVTGVVMPSIDRVGRYFPLTVACLLPANADLGGLVGGDDGWFEQVESLLLSTLEPEAEVEAFEQAVAQLPAPPCGPRIEQSLISGNLLRSEAVTPAQRLAALAQHACDGASHWWGRGSARISAGLMRYQGLPPAPAFGRFLTGEGEVIPLFPGIPG
Atome Classification :
(18 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30.....-...40-........50..------......60........70........80..-......90........100-.......110-.......120...----....130.......140..--------.....150..------.--....----160.......170......------------.180..--.-------....190.......200-----..-----......210......--.220....-------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNSVG
F
Y
G
KLAGRG
D
F
V
SRGLPNTFV
E
P
W
D
A
W
L
A
SG-MRA
S
Q
-
D
E
L
G
A
A
W
L
D
A
Y
L
------TS
P
L
W
R
F
AIAPGLLGGE
A
V
T
G
VVMP
S
I
D
R
V-GRYF
P
L
T
V
A
C
LLPANADLG-GLVGGD
D
G
W
F
-
E
Q
V
E
S
L
L
L
S
TLEP----
E
A
E
V
E
A
F
E
Q
A
V
A
QLPAPPC--------G
P
R
I
E
Q
S
L
IS------G--NLLR----SEAV
T
P
A
Q
R
L
A
A
L
A
Q
H
ACD------------GASHWW--G-------RGS
A
R
I
S
A
G
L
M
RYQGL------PP-----APAFGRFLTGEG
E
V
I
--
P
LFPGIPG-------------------------------------------------------------------------------
16
Fugue
93.09
21%
-60
- C5 -
1NH1
-
AVRB_PSESG
A:
[28-317]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALPGPSQRQLE
V
Y
D
Q
C
L
IGAARWPDDSSKSNTP
E
N
R
A
Y
C
Q
S
M
Y
N
S
I
R
S
A
G
D
E
I
S
R
G
G
I
T
S
F
E
E
L
W
G
R
--
A
T
E
-
W
R
L
S
K
-
L
Q
R
G
E
P
L
Y
S
A
F
A
SERTSD
T
D
A
V
T
P
L
V
K
P
Y
K
S
V
L
A
R
V
V
D
H
E
D
A
H
D
E
I
M
Q
-
D
N
L
F
G
D
L
N
V
K
V
Y
R
Q
T
A
Y
L
H
-
G
-------------
N
V
I
P
L
N
T
F
R
V
----
A
T
D
T
E
Y
L
R
D
R
V
A
H
L
R
T
E
L
G
--------
A
K
A
L
K
Q
H
L
Q
R
------
Y
NP
D
R
I
D
HTNA
S
Y
L
P
I
I
K
D
H
L
N
D
L
Y
R
Q
A
I
S
SDLS
Q
A
E
L
I
S
L
I
A
R
T
H
W
W
--
A
A
S
A
MPDQ
R
G
S
A
A
K
A
E
F
A
A
R
A
I
A
S
A
H
GIEL
P
P
FRNGN
V
S
D
I
E
A
M
L
S
G
E
E
E
F
V
--
E
K
Y
R
S
L
L
D
-------------------------------------------------------------------------------
17
Fugue
91.79
21%
-78
- C5 -
2BVL
8
TOXB_PEPDI
A:
[1-543]
MSLVN
R
K
Q
L
E
K
M
A
NVRFRTQE
D
E
Y
V
A
I
L
D
A
L
E
E
Y
H
N
MSENT
V
V
E
K
Y
L
K
L
K
D
I
N
S
L
T
D
I
C
I
D
T
Y
KKSGR
N
K
A
L
K
K
F
K
E
Y
L
V
T
E
V
L
E
L
K
N
N
NLTPVEK
N
L
H
F
V
W
I
GGQIN
D
T
A
I
N
Y
I
N
Q
W
K
D
V
N
SD
Y
N
V
N
V
F
Y
D
SNAFL
I
N
T
L
K
K
T
V
V
E
S
A
I
N
D
T
L
E
S
F
RENLNDPRFD
Y
N
K
F
F
R
K
R
M
E
I
I
Y
D
K
Q
K
N
F
I
N
Y
Y
K
A
Q
R
E
E
NPELI
I
D
D
I
V
K
T
Y
L
S
N
E
YSKE
I
D
E
L
N
T
Y
I
E
E
S
L
N
K
I
T
Q
N
S
G
N
D
V
R
N
F
G
E
F
K
N
G
E
S
F
--
N
L
Y
E
Q
E
L
V
E
R
W
N
L
A
A
A
S
D
I
L
R
I
S
A
L
K
E
I
G
G
M
Y
L
D
V
D
M
------
L
P
-----
G
I
Q
P
D
L
F
-----
E
S
I
E
K
P
S
S
V
T
V
-
D
F
W
E
M
T
K
L
E
A
I
M
K
Y
K
E
Y
I
P
-
E
Y
T
S
E
H
F
D
M
L
D
E
E
V
Q
S
S
F
E
S
V
L
A
S
----
K
S
D
K
S
E
I
F
S
S
L
G
D
M
E
A
S
P
L
E
V
K
I
A
F
N
S
K
G
I
I
N
Q
G
L
I
S
V
K
DS
Y
C
S
--
N
L
I
V
----
K
Q
I
E
N
R
Y
K
I
L
N
N
S
L
N
P
A
I
S
------------
E
-
D
N
D
F
--
N
-------
T
T
T
N
T
F
I
D
S
I
M
A
E
----------
A
-----
N
A
D
N
G
R
F
M
M
E
L
G
K
Y
L
RV
G
F
F
P
D
V
K
T
T
I
N
L
SG
P
E
A
Y
A
A
A
Y
Q
D
L
L
M
FKEGSMNIHLI
E
A
D
L
R
N
F
EISKTNISQST
E
Q
E
M
A
SLWSFD
D
A
R
A
K
A
Q
F
E
E
Y
K
R
N
Y
F
E
GAL
21
Fugue
73.90
16%
-33
- C4 -
2KYY
-
?
A:
[1-153]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
S
A
T
D
L
L
D
E
L
N
A
V
D
-
E
S
A
R
I
-
E
A
K
R
A
S
D
M
G
K
S
V
------
M
E
T
V
I
A
F
A
N
E
P
G
L
D
G
G
Y
L
L
L
G
V
D
W
A
I
N
D
K
G
-
D
T
V
Y
R
P
V
----------------
G
L
P
D
----------------
P
----
D
K
V
Q
R
D
L
A
S
Q
C
A
S
M
L
N
V
A
L
--------
R
P
E
M
Q
L
E
Q
V
G
------
G
--
K
T
L
L
----
V
V
Y
V
P
E
A
D
V
T
H
K
P
I
Y
K
K
A
T
------------
G
--------------------------
L
P
G
G
A
------
Y
R
-----
R
I
G
S
S
D
Q
R
C
V
L
E
H
H
H
--
H
H
H
------------------------------------------------------------------------------------
15
Fugue
59.11
24%
-39
- C5 -
2A3D
-
?
A:
[1-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
S
W
A
E
F
-
K
Q
R
L
A
A
I
K
T
R
L
Q
A
LGGS
E
A
E
L
A
A
F
E
K
E
I
A
A
F
E
S
E
L
Q
--------
A
Y
K
-
G
K
G
N
P
E
------
V
--
E
A
L
R
----
K
E
A
A
A
I
R
D
E
L
Q
A
Y
R
H
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
57.19
12%
-20
- C3 -
4KXR
-
?
B:
[1-174]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
H
F
E
A
Y
P
P
E
V
N
S
A
N
I
Y
A
G
P
G
-
P
D
S
M
L
A
A
A
R
A
W
R
S
L
D
-
V
E
M
T
A
-
V
Q
R
S
F
N
R
T
L
L
S
L
------
M
D
A
W
-----------
A
G
P
V
V
M
Q
L
M
E
A
A
K
P
F
-
V
R
W
L
T
D
L
C
V
Q
L
S
E
V
E
R
Q
I
H
-
E
I
V
R
A
Y
E
W
A
H
-
H
D
--------
M
V
P
----
L
A
Q
I
Y
N
N
R
A
E
R
Q
I
L
I
D
N
N
----------------------------------------
A
L
G
Q
F
T
A
Q
I
A
D
L
D
Q
E
------------
Y
D
D
F
W
D
--
E
-------
D
G
E
V
M
R
D
Y
R
L
R
V
S
D
A
L
------
S
K
-----
L
T
P
W
K
A
--------------
P
P
P
I
A
-------------------------------------------------------------------------------
18
Fugue
54.32
17%
-4
- C5 -
2LN3
-
?
A:
[1-83]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
L
T
R
T
I
T
S
----
Q
N
K
E
E
L
L
E
I
A
L
K
F
I
S
Q
-----------
G
L
D
L
E
V
E
F
D
S
------
T
--
D
--
D
----
K
E
I
E
E
F
E
R
D
M
E
D
L
A
K
K
T
G
V
------------
Q
I
Q
K
Q
W
QG
N
-------
K
L
R
I
R
L
K
G
S
L
E
H
H
H
H
H
------
H
--------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
46.97
43%
-22
- C5 -
4LIM
-
PRI1_YEAST
A:
[294-325]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
C
K
E
D
L
V
L
M
T
L
Y
P
----
K
L
D
V
E
V
T
K
Q
T
I
H
L
L
K
A
P
F
C
--------
I
H
P
A
T
G
N
V
C
V
------
P
--
I
D
E
S
----
F
A
P
E
K
A
P
K
L
I
D
L
Q
T
E
M
E
K
N
------------
N
D
V
S
L
T
--
A
-------
L
Q
P
F
I
N
Q
F
Q
A
Y
V
S
S
L
L
------
K
N
-----
E
L
G
S
----------------------------------------------------------------------------------------------------
10
HHSearch
46.69
19%
-60
- C5 -
2KPQ
-
?
A:
[24-76]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
P
R
I
F
N
G
V
Y
E
A
F
D
F
L
Q
H
E
W
P
A
R
G
D
R
A
H
-
E
Q
A
L
R
L
C
R
A
S
L
M
G
----
D
V
A
G
E
I
A
R
T
A
F
V
A
A
S
R
Q
A
H
--------
C
L
M
E
D
K
A
E
A
P
------
N
--
T
I
A
S
----
G
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
45.30
35%
15
- C5 -
1FMH
3
GCN4_YEAST
A:
[1-31]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
A
Q
L
E
K
E
V
A
Q
A
----
E
A
E
N
Y
Q
L
E
Q
E
V
A
Q
L
E
H
E
C
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
45.07
31%
13
- C5 -
1COI
3
?
A:
[1-29]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
E
A
L
E
K
K
V
A
A
L
----
E
S
K
V
Q
A
L
E
K
K
V
E
A
L
E
H
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
44.90
43%
-17
- C5 -
4MM2
1
PRI1_YEAST
A:
[304-335]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
C
K
E
D
L
V
L
M
T
L
Y
P
----
K
L
D
V
E
V
T
K
Q
T
I
H
L
L
K
A
P
F
C
--------
I
H
P
A
T
G
N
V
C
V
------
P
--
I
D
E
S
----
F
A
P
E
K
A
P
K
L
I
D
L
Q
T
E
M
E
K
N
------------
N
D
V
S
L
T
--
A
-------
L
Q
P
F
I
N
Q
F
Q
A
Y
V
S
S
L
L
------
K
N
-----
E
L
G
S
V
K
R
E
R
E
D
D
D
E
------------------------------------------------------------------------------------------
19
Fugue
39.40
26%
51
* C5 *
4G1A
4
?
A:
[2-27]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
A
L
E
Q
K
I
A
A
L
----
E
Q
K
C
A
A
C
E
Q
K
I
A
A
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
32.95
37%
52
- C2 -
1JB0
-
PSAE_THEEB
E:
[20-39]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
T
V
-
A
S
V
D
Q
T
P
G
V
K
Y
P
V
I
V
R
F
D
K
V
N
Y
T
G
Y
S
-
G
S
A
S
G
V
N
T
N
N
-
F
A
L
H
E
V
Q
E
V
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
32.25
12%
22
- C5 -
1PP9
-
QCR8_BOVIN
G:
[4-44]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
H
L
T
R
V
R
H
V
I
T
Y
S
L
S
P
F
E
Q
R
A
F
P
H
Y
F
S
K
G
-
I
P
N
V
L
-
R
R
T
R
A
C
I
L
R
V
A
P
------
P
F
V
A
F
Y
L
V
Y
T
W
G
T
Q
E
F
E
K
S
K
R
K
N
P
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
31.32
25%
102
* C6 *
1VR8
2
?
A:
[93-112]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
N
M
G
K
F
S
T
V
S
N
G
K
K
I
V
A
W
W
R
K
N
W
L
F
I
-
V
E
G
K
N
-
G
V
E
E
F
V
K
H
V
Y
R
V
------
Y
E
E
M
K
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
23.98
12%
53
- C5 -
2WHN
-
?
A:
[54-87]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
P
A
L
E
R
G
P
G
L
K
D
L
A
I
F
S
R
Q
L
A
T
M
L
G
A
G
-
L
T
L
L
Q
-
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
10.94
14%
203
- C6 -
1JY4
-
?
A:
[18-31]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
Q
K
W
H
F
V
L
-
G
Y
K
C
E
I
L
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
6.01
38%
395
- C1 -
3WMI
-
?
B:
[2-9]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
W
D
D
W
V
D
K
M
-
E
N
L
N
H
-
D
I
L
T
T
L
H
T
A
R
N
N
------
L
E
Q
S
M
I
T
F
N
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------