@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0080: (2015-12-21 )
MQKLIVALFGLLLAACSSSPPETPPTRVVIWLHAAPNLNPSAAGQAAPLRLRLYELKKDTAFGRADYFALTDNAQSTLGGDLVEQDEFLLRPGEERRIERTLDEQTRQLGFVAAYRDLDRATWRQVLDVPGQRTSHLDITLGAQAIGIVARPAP
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.........30.........40........50...--.....60........70........----80........90.------..-.-...---.100-.......110.......--120......-...-130.-..--..-----------..140.......150..----------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
Q
K
L
I
V
A
L
F
G
L
L
L
A
A
CSSSP-PETPP
T
R
V
V
I
-
W
L
HAAPNLNPSAAGQAA
P
L
R
L
R
L
Y
--
E
LKKDTAFGRA
D
Y
F
A
LTDNAQSTLG----GDLVEQDEFLLRP------G
E
-
E
-
R
R
I
---
E
R
T
L
-
D
E
Q
T
R
Q
L
G
F
V
A
A
Y
R
DL
D
--
R
--
A
T
W
R
Q
V
-LDV-PGQR-T
S
--
H
L
-----------
D
I
T
LG
A
Q
A
I
G
I
VARPAP----------------------
29
Fugue
96.58
30%
-94
* C5 *
4A1R
1
?
A:
[5-146]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
P
S
R
Y
S
L
-
V
F
D
A
D
R
Q
V
N
A
A
A
G
A
Q
P
A
P
I
K
I
R
V
L
--
L
L
R
S
D
A
E
F
M
D
A
D
F
F
S
L
Q
N
D
A
K
S
V
L
G
----
N
S
L
L
D
S
D
Q
F
F
L
T
P
------
G
Q
-
T
G
K
K
L
---
G
G
Q
S
-
A
L
D
A
R
Y
I
G
V
I
A
E
Y
Q
N
L
D
--
G
--
K
T
W
R
I
S
-
L
P
L
-
P
E
P
T
-
E
T
--
N
F
YKVWQFSPD
E
L
E
A
H
I
V
A
G
V
S
G
L
R
P
V
K
------------------------
17
HHSearch
84.25
26%
-89
- C5 -
3RX9
1
?
A:
[22-151]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
K
T
L
H
L
-
D
I
R
A
R
E
A
I
N
T
S
A
A
G
I
P
L
S
V
V
V
R
I
Y
--
Q
L
K
D
N
R
S
F
D
S
A
D
Y
Q
A
L
F
T
G
D
N
E
I
L
A
----
G
D
I
I
A
Q
K
D
V
W
L
Q
P
------
G
G
-
S
-
V
A
V
---
D
M
P
L
-
D
D
A
A
K
F
T
G
V
A
A
M
F
L
E
P
D
--
Q
KK
N
T
W
R
V
V
-
L
G
R
-
D
E
L
E
P
D
T
--
P
R
-----------
L
I
E
V
S
G
N
T
L
T
L
L
P
--------------------------
1
PsiBlast_PDB
82.50
34%
-70
- C5 -
4A1R
1
?
A:
[5-113]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
P
S
R
Y
S
L
-
V
F
D
A
D
R
Q
V
N
A
A
A
G
A
Q
P
A
P
I
K
I
R
V
L
--
L
L
R
S
D
A
E
F
M
D
A
D
F
F
S
L
Q
N
D
A
K
S
V
L
G
----
N
S
L
L
D
S
D
Q
F
F
L
T
P
------
G
Q
-
T
-
G
K
K
L
G
G
Q
S
A
L
-
D
--
A
R
Y
I
G
V
I
A
E
Y
Q
N
L
D
--
G
--
K
T
W
R
I
S
-
L
P
L
-
P
E
P
T
-
E
T
--
N
F
-----------
Y
K
V
W
Q
F
S
P
D
E
L
E
A
H
I
V
A
----------------------
15
PsiBlast_CBE
80.20
34%
-68
- C5 -
4A1R
1
?
C:
[7-113]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
R
Y
S
L
-
V
F
D
A
D
R
Q
V
N
A
A
A
--
Q
P
A
P
I
K
I
R
V
L
--
L
L
R
S
D
A
E
F
M
D
A
D
F
F
S
L
Q
N
D
A
K
S
V
L
G
----
N
S
L
L
D
S
D
Q
F
F
L
T
P
------
G
Q
-
T
-
G
K
K
L
G
G
Q
S
A
L
-
D
--
A
R
Y
I
G
V
I
A
E
Y
Q
N
L
D
--
G
--
K
T
W
R
I
S
-
L
P
L
-
P
E
P
T
-
F
Y
--
K
V
-----------
W
Q
F
S
P
D
E
L
E
A
H
I
V
A
G
V
S
----------------------
2
PsiBlast_PDB
76.94
33%
-57
- C5 -
3RX9
1
?
A:
[30-127]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
A
R
E
A
I
N
T
S
A
A
G
I
P
L
S
V
V
V
R
I
Y
--
Q
L
K
D
N
R
S
F
D
S
A
D
Y
Q
A
L
F
T
G
D
N
E
I
L
A
----
G
D
I
I
A
Q
K
D
V
W
L
Q
P
------
G
G
-
S
-
V
A
V
---
D
M
P
L
-
D
D
A
A
K
F
T
G
V
A
A
M
F
L
E
P
D
QK
K
--
N
T
W
R
V
V
-
L
G
R
-
D
E
L
E
-
P
D
--
T
P
-----------
R
L
I
E
V
S
G
N
T
L
T
L
L
P
-------------------------
3
PsiBlast_PDB
75.73
33%
-58
- C5 -
4Y7O
-
?
C:
[30-127]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
A
R
E
A
I
N
T
S
A
A
G
I
P
L
S
V
V
V
R
I
Y
--
Q
L
K
D
N
R
S
F
D
S
A
D
Y
Q
A
L
F
T
G
-----------
D
I
I
A
Q
K
D
V
W
L
Q
P
------
G
G
-
S
-
V
A
V
---
D
M
P
L
-
D
D
A
A
K
F
T
G
V
A
A
M
F
L
E
P
D
QK
K
--
N
T
W
R
V
V
-
L
G
R
-
D
E
L
E
-
P
D
--
T
P
-----------
R
L
I
E
V
S
G
N
T
L
T
L
L
P
V
------------------------
12
PsiBlast_PDB
70.24
30%
-57
- C8 -
2O8E
2
MSH2_HUMAN
A:
[444-526]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
D
F
S
K
F
Q
E
M
I
E
T
T
L
D
----
M
D
Q
V
E
N
H
E
F
L
V
K
P
SFD
P
N
L
S
E
-
L
-
R
E
I
---
M
N
D
L
--
E
K
K
M
Q
S
T
L
I
S
A
A
R
D
L
G
--
L
--
D
P
G
K
Q
I
K
L
D
S
-
S
A
Q
F
-
G
Y
--
Y
F
-----------
R
V
T
C
K
E
E
K
V
L
R
N
N
K
N
F
S
----------------------
4
PsiBlast_PDB
69.75
30%
-70
- C8 -
2O8B
2
MSH2_HUMAN
A:
[444-526]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
D
F
S
K
F
Q
E
M
I
E
T
T
L
D
----
M
D
Q
V
E
N
H
E
F
L
V
K
P
SFD
P
N
L
S
E
-
L
-
R
E
I
---
M
N
D
L
--
E
K
K
M
Q
S
T
L
I
S
A
A
R
D
L
G
--
L
--
D
P
G
K
Q
I
K
L
D
S
-
S
A
Q
F
-
G
Y
--
Y
F
-----------
R
V
T
C
K
E
E
K
V
L
R
N
N
K
N
F
S
----------------------
7
PsiBlast_PDB
69.65
30%
-53
- C8 -
2O8F
2
MSH2_HUMAN
A:
[444-526]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
D
F
S
K
F
Q
E
M
I
E
T
T
L
D
----
M
D
Q
V
E
N
H
E
F
L
V
K
P
SFD
P
N
L
S
E
-
L
-
R
E
I
---
M
N
D
L
--
E
K
K
M
Q
S
T
L
I
S
A
A
R
D
L
G
--
L
--
D
P
G
K
Q
I
K
L
D
S
-
S
A
Q
F
-
G
Y
--
Y
F
-----------
R
V
T
C
K
E
E
K
V
L
R
N
N
K
N
F
S
----------------------
6
PsiBlast_PDB
68.92
30%
-64
- C8 -
2O8D
2
MSH2_HUMAN
A:
[444-526]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
D
F
S
K
F
Q
E
M
I
E
T
T
L
D
----
M
D
Q
V
E
N
H
E
F
L
V
K
P
SFD
P
N
L
S
E
-
L
-
R
E
I
---
M
N
D
L
--
E
K
K
M
Q
S
T
L
I
S
A
A
R
D
L
G
--
L
--
D
P
G
K
Q
I
K
L
D
S
-
S
A
Q
F
-
G
Y
--
Y
F
-----------
R
V
T
C
K
E
E
K
V
L
R
N
N
K
N
F
S
----------------------
9
PsiBlast_PDB
68.79
30%
-57
- C8 -
3THX
2
MSH2_HUMAN
A:
[444-526]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
D
F
S
K
F
Q
E
M
I
E
T
T
L
D
----
M
D
Q
V
E
N
H
E
F
L
V
K
P
SFD
P
N
L
S
E
-
L
-
R
E
I
---
M
N
D
L
--
E
K
K
M
Q
S
T
L
I
S
A
A
R
D
L
G
--
L
--
D
P
G
K
Q
I
K
L
D
S
-
S
A
---
G
Y
--
Y
F
-----------
R
V
T
C
K
E
E
K
V
L
R
N
N
K
N
F
S
----------------------
5
PsiBlast_PDB
68.02
30%
-60
- C8 -
2O8C
2
MSH2_HUMAN
A:
[444-526]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
D
F
S
K
F
Q
E
M
I
E
T
T
L
D
----
M
D
Q
V
E
N
H
E
F
L
V
K
P
SFD
P
N
L
S
E
-
L
-
R
E
I
---
M
N
D
L
--
E
K
K
M
Q
S
T
L
I
S
A
A
R
D
L
G
--
L
--
D
P
G
K
Q
I
K
L
D
S
-
S
A
Q
F
-
G
Y
--
Y
F
-----------
R
V
T
C
K
E
E
K
V
L
R
N
N
K
N
F
S
----------------------
32
Fugue
67.64
20%
-54
- C3 -
1E9R
2
?
A:
[4-436]
VGQGEFGGAPFKRFLR
G
T
R
I
V
S
G
G
K
L
K
R
M
T
REK
A
K
Q
V
T
V
AGVPMPRDAEPR
H
L
L
V
N
G
A
T
GTG
K
S
V
L
L
R
E
L
A
Y
T
G
L
L
R
G
D
R
M
V
I
VDPNG
D
M
L
S
K
FGRDK
D
I
I
L
N
PYDQRTKGWSFFNEIRNDY
D
W
Q
R
Y
A
L
S
V
V
PRGKT
D
E
A
E
E
W
A
S
Y
G
R
L
L
L
R
E
T
A
K
K
L
A
L
I
GTPS
M
R
E
L
F
H
W
T
TIAT
F
D
D
L
R
G
F
L
EGTLA
E
S
L
F
A
GS
N
E
A
S
K
A
L
T
S
A
R
F
V
L
S
D
K
L
P
E
H
V
T
MPDGDFS
I
R
S
W
L
E
DPNGGNLFITWREDMGPA
L
R
P
L
I
S
A
W
V
D
V
V
C
T
S
I
L
S
L
P
-
E
E
-
P
K
R
R
L
W
L
-
F
I
D
E
L
A
S
L
E
K
L
A
S
L
A
D
A
L
T
K
G
R
K
A
--
G
L
R
V
V
A
G
L
Q
--
S
T
S
Q
L
D
D
V
Y
G
V
K
E
A
----
Q
T
L
R
A
S
F
R
S
L
V
V
L
------
G
G
-
S
-
R
T
D
---
P
K
T
N
-
E
D
M
S
L
S
L
G
E
H
E
V
E
R
D
R
A
--
L
--
E
R
V
R
E
R
-
V
-
V
-
M
P
A
E
-
I
A
--
N
L
-----------
P
---
D
L
T
A
Y
V
G
F
A
G
N
R
P
I
A
K
V
P
L
E
I
K
Q
F
A
NRQPA
F
V
E
G
T
10
PsiBlast_PDB
67.48
30%
-57
- C8 -
3THY
1
MSH2_HUMAN
A:
[444-526]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
D
F
S
K
F
Q
E
M
I
E
T
T
L
D
----
M
D
Q
V
E
N
H
E
F
L
V
K
P
SFD
P
N
L
S
E
-
L
-
R
E
I
---
M
N
D
L
--
E
K
K
M
Q
S
T
L
I
S
A
A
R
D
L
G
--
L
--
D
P
G
K
Q
I
K
L
D
S
-
S
A
Q
F
-
G
Y
--
Y
F
-----------
R
V
T
C
K
E
E
K
V
L
R
N
N
K
N
F
S
----------------------
8
PsiBlast_PDB
65.86
30%
-54
- C8 -
3THW
-
MSH2_HUMAN
A:
[444-526]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
D
F
S
K
F
Q
E
M
I
E
T
T
L
D
----
M
D
Q
V
E
N
H
E
F
L
V
K
P
SFD
P
N
L
S
E
-
L
-
R
E
I
---
M
N
D
L
--
E
K
K
M
Q
S
T
L
I
S
A
A
R
D
L
G
--
L
--
D
P
G
K
Q
I
K
L
D
S
-
S
A
---
G
Y
--
Y
F
-----------
R
V
T
C
K
E
E
K
V
L
R
N
N
K
N
F
S
----------------------
11
PsiBlast_PDB
64.83
30%
-61
- C8 -
3THZ
1
MSH2_HUMAN
A:
[444-526]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
D
F
S
K
F
Q
E
M
I
E
T
T
L
D
----
M
D
Q
V
E
N
H
E
F
L
V
K
P
SFD
P
N
L
S
E
-
L
-
R
E
I
---
M
N
D
L
--
E
K
K
M
Q
S
T
L
I
S
A
A
R
D
L
G
--
L
--
D
P
G
K
Q
I
K
L
D
S
-
S
A
---
G
Y
--
Y
F
-----------
R
V
T
C
K
E
E
K
V
L
R
N
N
K
N
F
S
----------------------
36
Fugue
64.20
20%
-9
- C5 -
2WQ4
3
?
A:
[2-135]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
L
S
A
S
I
V
S
A
P
-
V
V
T
S
E
T
Y
V
D
I
-
P
G
L
Y
L
D
V
A
K
A
G
I
R
D
G
K
L
Q
V
I
L
N
V
P
--
T
P
Y
A
T
G
N
N
F
P
G
I
Y
F
A
I
A
T
N
Q
G
V
V
A
D
----
G
C
F
T
Y
S
S
K
V
P
E
S
T
------
G
R
M
P
-
F
T
L
---
V
A
T
I
-
D
--------
V
G
S
G
V
T
F
V
--
K
--
G
Q
W
K
S
V
-------
R
G
-
S
A
M
-
H
I
-----------
D
S
Y
A
S
L
S
A
I
W
G
T
A
A
P
S
S
----------------------
38
Fugue
60.57
14%
-65
- C5 -
2J73
1
PULA_THEMA
A:
[1-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
E
T
T
I
V
V
-
H
Y
H
-------
R
Y
D
G
K
Y
D
G
W
N
L
W
I
W
--
P
V
E
P
V
S
Q
E
G
K
A
Y
Q
F
T
G
E
D
D
F
-------------------------------
G
-
K
V
A
---
V
V
K
L
-
P
M
D
L
T
K
V
G
I
I
V
R
L
N
E
W
Q
--
A
--
K
D
V
A
K
D
-
R
F
I
E
I
K
D
G
-
K
A
--
E
V
-----------
W
I
L
Q
G
V
E
E
I
---
F
Y
E
K
P
----------------------
30
Fugue
51.34
22%
18
* C7 *
4FGI
-
?
B:
[23-169]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
F
T
Q
L
E
I
V
P
Q
F
G
-------
S
P
N
M
F
G
G
E
D
E
H
V
R
V
M
F
S
N
E
D
P
N
D
D
N
P
D
A
F
P
E
P
P
V
Y
L
A
D
R
--
D
--------
S
G
N
D
C
R
I
E
D
G
G
I
W
S
R
G
----
G
V
F
L
S
Q
D
G
----------------------
R
R
V
L
M
H
E
F
S
G
S
S
A
E
L
V
S
Y
-
D
S
A
--
T
--
C
K
V
V
H
R
-
E
D
I
-
S
G
Q
R
-
W
A
V
D
K
D
-----------
G
L
R
L
G
Q
K
C
S
G
E
S
V
D
S
C
A
K
I
V
K
R
S
LAPFCQT---------
13
PsiBlast_PDB
50.50
26%
3
* C6 *
1IPK
-
GLCB_SOYBN
A:
[301-384]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
E
V
Q
R
Y
R
A
E
L
S
E
D
D
V
F
V
I
P
A
A
Y
P
F
V
V
N
A
T
S
N
L
N
F
L
A
F
G
I
N
A
E
N
N
Q
R
N
F
L
A
------
G
E
-
K
-
D
N
V
---
V
R
Q
I
-
E
R
Q
V
Q
E
L
A
F
P
G
S
A
Q
D
V
E
--
R
--
L
L
K
K
Q
R
-
E
S
Y
-
F
V
D
A
---------------------------------------------------------