@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0081: (2015-12-21 )
MPLRLTITSYHKLTPGQCSEKVLDQGQLTIGRGPDNDWVLPDPERLVSSRHCTILNRDGVYYLTDTSTNGVLLVNAGHRLRRGNSEPLQDGETVRLGEYDILVQLGHDIALPGSGNPQTDPFTSFDALMSRQAAGSAPAFAEPAPTPHPAVTAHFQGGSPLDTKPDLFDFLTPPPPGAAPRPDHVPAEQHDFRPPEPVIPPPPATTPAPPPAGGAPLIPADWDPFAELLGNTPAPSATPVAQPLPTAEPTPLAMPFADPGITQQPQPQPQPQPQPQPQPQPQPQPASVAAPTPPASAAASAGGDLLQAFLRGAGMTQLKVDPAGAEAQMEAIGRSYRGLVEGLVDVLRARASLKGEFRMAQTMIQPVQNNPLKFAPNVDEAMLLLLRRDNQAFMAPDRAVADSFEDLKAHQLAVMAGVQAAIRHLLARFEPAALEARFGKPAGLSGLLPGARQAQNWDSFTELYAKILREAEDDFQELFGREFSRAYEEHSARLRRS
Atome Classification :
(20 SA)
---.........-10...--.....20...-.-----.-...30...------.-.-...40..-------..-------....50.....--.-----.--.60---.....-.-..-.70........80.--------.....-----..-----90......---.---.100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---M
P
L
R
L
T
IT
S
-
Y
HKLT--
P
G
Q
C
S
E
K
V
LD-Q-----G-
Q
L
T
IGRGP------D-N-DWVLP
D
P
-------
E
R
-------
L
VSSRH
C
T
I
LN--R-----D--
G
V
----
Y
Y
L
TD-T-ST-N
G
V
L
L
VNAGHRLRR--------GNSEP-----LQ-----DG
E
T
V
R
LG---E---
Y
D
I
L
V
QLGH
D
I
ALPGSGNPQTDPF
T
S
F
D
A
L
M
S
R
QAAGSAPAFAEPAPTPHP
A
V
T
A
H
FQGGSPLDTKP
D
L
F
D
FLTPPPPGAAPRPDHVPAEQHDFRPPEPVIPPPPATTPAPPPAGGAPLIPAD
W
D
P
F
A
E
L
LGNTPAPSATPVAQPLPTAEPTPLAMPFADPGITQQPQPQPQPQPQPQPQPQPQPQPASVAAPTPP
A
S
A
A
ASA
G
G
D
L
L
Q
A
F
L
RGAG
M
T
Q
L
K
VDPAG
A
E
A
Q
M
E
A
I
G
R
S
Y
R
G
L
V
E
G
L
V
D
V
L
R
A
R
A
SLKG
E
F
R
M
A
Q
T
M
I
Q
PVQNNPLKFAP
N
V
D
E
A
M
L
L
L
L
RRDNQAFMAP
D
R
A
V
A
D
S
F
E
D
L
K
A
H
Q
L
A
V
M
A
G
V
Q
A
A
I
R
H
L
L
A
RFE
P
A
A
L
E
ARFGKPAGLSGLLPG
A
R
QAQ
N
W
D
S
F
T
E
L
Y
A
K
I
L
R
E
A
E
D
D
F
Q
E
L
F
G
R
E
F
S
R
A
Y
E
E
H
S
A
R
LRRS
7
PsiBlast_PDB
81.02
35%
-60
- C1 -
3PO8
1
A:
[9-96]
---------------
Q
L
D
--
D
G
S
G
R
T
Y
Q
L
R
-
E
-----
G
-
S
N
I
I
G
R
G
Q
------
D
-
A
-
Q
F
R
L
P
D
T
-------
G
---------
V
S
R
R
H
L
E
I
R
W
--
D
-----
G
--
Q
V
----
A
L
L
A
D
L
N
-
S
T
-
N
G
T
T
V
N
N
A
------------------
P
-----
V
Q
E
W
Q
L
A
D
G
D
V
I
R
L
G
---
H
---
S
E
I
I
V
R
M
H
P
L
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
80.96
35%
-63
- C1 -
3POA
2
A:
[9-96]
---------------
Q
L
D
--
D
G
S
G
R
T
Y
Q
L
R
-
E
-----
G
-
S
N
I
I
G
R
G
Q
------
D
-
A
-
Q
F
R
L
P
D
T
-------
G
---------
V
S
R
R
H
L
E
I
R
W
--
D
-----
G
--
Q
V
----
A
L
L
A
D
L
N
-
S
T
-
N
G
T
T
V
N
N
A
------------------
P
-----
V
Q
E
W
Q
L
A
D
G
D
V
I
R
L
G
---
H
---
S
E
I
I
V
R
M
H
P
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
80.57
35%
-55
- C1 -
3OUN
-
A:
[71-157]
---------------
Q
L
D
--
D
G
S
G
R
T
Y
Q
L
R
-
E
-----
G
-
S
N
I
I
G
R
G
Q
------
D
-
A
-
Q
F
R
L
P
D
T
-------
G
---------
V
S
R
R
H
L
E
I
R
W
--
D
-----
G
--
Q
V
----
A
L
L
A
D
L
N
-
S
T
-
N
G
T
T
V
N
N
A
------------------
P
-----
V
Q
E
W
Q
L
A
D
G
D
V
I
R
L
G
---
H
---
S
E
I
I
V
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
80.48
32%
-79
- C1 -
3PO8
1
A:
[5-98]
------
S
V
T
L
Q
L
-
D
D
G
------
S
G
R
T
Y
Q
L
R
-
E
-----
G
-
S
N
I
I
G
R
G
Q
------
D
-
A
-
Q
F
R
L
P
D
---------
T
-------
G
V
S
R
R
H
L
E
I
R
W
--
D
-----
G
--
Q
V
----
A
L
L
A
D
-
L
-
N
S
T
N
G
T
T
V
N
N
--
A
P
V
Q
E
-----------
W
Q
-----
L
A
-----
D
G
D
V
I
R
L
G
---
H
---
S
E
I
I
V
R
M
H
P
L
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
79.03
22%
-69
- C1 -
1MZK
-
P2C70_ARATH
A:
[177-298]
LG
S
S
W
L
F
L
E
V
I
A
G
P
A
I
G
L
--
Q
H
A
V
N
S
T
S
S
S
-
K
-----
L
-
P
V
K
L
G
R
V
S
------
P
-
S
-
D
L
A
L
K
D
S
-------
E
---------
V
S
G
K
H
A
Q
I
T
W
N
S
T
-----
K
--
F
K
----
W
E
L
V
D
-
M
-
G
S
-
L
N
G
T
L
V
N
-
S
H
S
I
S
H
--------
P
D
L
G
S
-----
R
K
-----
W
G
N
P
V
E
L
A
---
S
---
D
D
I
I
T
-
L
G
T
T
T
K
V
Y
V
R
I
S
S
Q
N
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
78.22
25%
-59
* C1 *
3VA4
-
MDC1_MOUSE
A:
[26-128]
------
Q
L
R
L
F
S
-
G
T
H
-----
G
P
E
R
D
F
P
L
Y
-
L
-----
G
-
K
N
V
V
G
R
S
P
------
D
-
C
-
S
V
A
L
P
F
---------
P
-------
S
I
S
K
Q
H
A
V
I
E
I
--
S
AW---
N
--
K
A
----
P
I
L
Q
D
-
C
-
G
S
L
N
G
T
Q
I
V
K
P
P
R
V
L
P
P
--------
G
V
S
H
R
-----
L
R
-----
D
Q
E
L
I
L
F
A
---
D
---
F
P
C
Q
Y
H
R
L
D
V
P
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
78.06
35%
-52
- C1 -
2LC1
-
A:
[12-99]
---------------
Q
L
D
--
D
G
S
G
R
T
Y
Q
L
R
-
E
-----
G
-
S
N
I
I
G
R
G
Q
------
D
-
A
-
Q
F
R
L
P
D
T
-------
G
---------
V
S
R
R
H
L
E
I
R
W
--
D
-----
G
--
Q
V
----
A
L
L
A
D
L
N
-
S
T
-
N
G
T
T
V
N
N
A
------------------
P
-----
V
Q
E
W
Q
L
A
D
G
D
V
I
R
L
G
---
H
---
S
E
I
I
V
R
M
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
76.74
36%
-59
- C1 -
3OUN
-
A:
[76-157]
----------------------
S
G
R
T
Y
Q
L
R
-
E
-----
G
-
S
N
I
I
G
R
G
Q
------
D
-
A
-
Q
F
R
L
P
D
---------
T
-------
G
V
S
R
R
H
L
E
I
R
W
--
D
-----
G
--
Q
V
----
A
L
L
A
D
-
L
-
N
S
T
N
G
T
T
V
N
N
--
A
P
V
Q
-----------
E
W
Q
-----
L
A
-----
D
G
D
V
I
R
L
G
---
H
---
S
E
I
I
V
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
76.62
27%
-84
- C1 -
2XT9
-
?
B:
[12-104]
-----
A
L
L
V
V
K
R
-
G
P
N
------
A
G
S
R
F
L
L
D
-
Q
-----
P
-
T
T
S
A
G
R
H
P
------
D
-
S
-
D
I
F
L
D
D
---------
V
-------
T
V
S
R
R
H
A
E
F
R
L
--
E
-----
G
--
G
E
----
F
Q
V
V
D
-
V
-
G
S
L
N
G
T
Y
V
N
R
--
E
P
V
D
-----------
S
A
V
-----
L
A
-----
N
G
D
E
V
Q
I
G
---
K
---
F
R
L
V
F
L
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
76.44
24%
-95
- C1 -
3GQS
1
?
A:
[5-103]
-----
F
L
L
K
V
L
A
--
A
N
------
I
G
A
E
F
H
L
D
-
S
-----
G
K
T
Y
I
V
G
S
D
P
------
Q
V
A
-
D
I
V
L
S
D
---------
M
-------
S
I
S
R
Q
H
A
K
I
I
I
--
G
-----
N
D-
N
S
----
V
L
I
E
D
-
L
-
G
S
K
N
G
V
I
V
E
G
--
R
K
I
E
H
----------
Q
S
T
-----
L
S
-----
A
N
Q
V
V
A
L
G
---
T
---
T
L
F
L
L
V
D
Y
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
75.57
29%
-62
- C1 -
2KKL
-
Y1858_MYCBO
A:
[61-150]
---------------
K
R
G
--
P
N
A
G
S
R
F
L
L
D
-
Q
-----
A
-
I
T
S
A
G
R
H
P
------
D
-
S
-
D
I
F
L
D
D
V
-------
T
---------
V
S
R
R
H
A
E
F
R
L
--
E
-----
N
--
N
E
----
F
N
V
V
D
-
V
G
S
L
-
N
G
T
Y
V
------------------
N
R
E
P
VD
S
A
V
L
A
-----
N
G
D
E
V
Q
I
G
---
K
---
F
R
L
V
F
L
T
G
H
K
Q
G
E
D
L
E
H
H
H
H
H
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
75.18
29%
-51
- C1 -
2XT9
-
?
B:
[17-104]
---------------
K
R
G
--
P
N
A
G
S
R
F
L
L
D
-
Q
-----
P
-
T
T
S
A
G
R
H
P
------
D
-
S
-
D
I
F
L
D
D
V
-------
T
---------
V
S
R
R
H
A
E
F
R
L
--
E
-----
G
--
G
E
----
F
Q
V
V
D
-
V
G
S
L
-
N
G
T
Y
V
------------------
N
R
E
P
VD
S
A
V
L
A
-----
N
G
D
E
V
Q
I
G
---
K
---
F
R
L
V
F
L
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
73.75
25%
-58
- C1 -
2KB3
-
ODHI_CORGL
A:
[48-141]
------
L
L
V
V
K
R
-
G
P
N
------
A
G
A
R
F
L
L
D
-
Q
-----
P
-
T
T
T
A
G
R
H
P
------
E
-
S
-
D
I
F
L
D
D
---------
V
-------
T
V
S
R
R
H
A
E
F
R
I
--
N
-----
E
--
G
E
----
F
E
V
V
D
-
V
-
G
S
L
N
G
T
Y
V
N
R
--
E
P
R
N
-----------
A
Q
V
-----
M
Q
-----
T
G
D
E
I
Q
I
G
---
K
---
F
R
L
V
F
L
A
G
P
A
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
72.11
25%
-47
- C1 -
3ELS
4
PML1_YEAST
A:
[32-145]
-----
Y
E
L
V
I
Y
R
-
K
N
D
K
D
--
K
G
P
W
K
R
Y
D
L
N
G
R
-----
S
-
C
Y
L
V
G
R
E
L
GHTEIV
V
-
A
-
D
I
G
I
P
E
---------
E
-------
T
S
S
K
Q
H
C
V
I
Q
F
--
R
-----
N
--
V
R
G
I
L
K
C
Y
V
M
D
-
L
-
D
S
S
N
G
T
C
L
N
N
--
V
V
I
P
G
--------
A
R
Y
I
E
-----
L
R
-----
S
G
D
V
L
T
L
S
---
E
---
F
E
E
D
N
D
Y
E
L
I
F
M
N
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
71.74
21%
-85
- C1 -
2JPE
-
PP1R8_MOUSE
A:
[27-129]
-----
L
H
L
D
V
V
K
-
G
D
K
------
L
I
E
K
L
I
I
D
-
E
K----
K
-
Y
Y
L
F
G
R
N
P
------
D
L
C
-
D
F
T
I
D
H
---------
Q
-------
S
C
S
R
V
H
A
A
L
V
Y
--
H
-----
K
HL
K
R
----
V
F
L
I
D
-
L
-
N
S
T
H
G
T
F
L
G
H
--
I
R
L
E
P
--------
H
K
P
Q
Q
-----
I
P
-----
I
D
S
T
V
S
F
G
---
A
---
S
T
R
A
Y
T
L
R
E
K
P
Q
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
71.51
21%
-60
- C1 -
4A0E
-
?
A:
[1-108]
-----
G
S
W
V
C
R
F
-
Y
Q
G
K
H
--
R
G
V
--
E
V
E
L
P
-
H
-----
G
-
R
C
V
F
G
S
D
P
------
L
-
Q
S
D
I
V
L
S
D
S
-------
E
---------
I
A
P
V
H
L
V
L
M
V
--
D
-----
E
--
E
G
----
I
R
L
T
D
-
S
-
A
E
-
P
---
L
L
Q
E
G
L
P
V
P
L
--------
G
T
--
L
-----
L
R
-----
A
G
S
C
L
E
V
G
---
F
---
L
L
W
T
F
V
A
V
G
Q
P
L
P
E
T
L
Q
V
P
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
70.46
22%
-49
- C1 -
1MZK
-
P2C70_ARATH
A:
[181-297]
----
W
L
F
L
E
V
I
A
-
G
P
A
------
I
G
L
Q
H
A
V
N
-
S
TSSSK
L
-
P
V
K
L
G
R
V
S
------
P
-
S
-
D
L
A
L
K
D
---------
S
-------
E
V
S
G
K
H
A
Q
I
T
W
--
N
-----
S
TK
F
K
----
W
E
L
V
D
-
M
-
G
S
L
N
G
T
L
V
N
S
--
H
S
I
S
H
PDLGSRKW
G
N
P
V
E
-----
L
A
-----
S
D
D
I
I
T
L
G
---
T
---
T
T
K
V
Y
V
R
I
S
S
Q
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
70.31
33%
-26
- C1 -
1G6G
1
RAD53_YEAST
B:
[39-113]
-----------------------------------------
T
F
G
R
N
P
------
A
-
C
-
D
Y
H
L
G
N
I
-------
S
R
-------
L
S
N
K
H
F
Q
I
L
L
G
--
E
-----
D
--
G
N
----
L
L
L
N
D
-
I
-
S
T
-
N
G
T
W
L
--
N
G
Q
K
V
E
K
--------
N
S
N
Q
L
-----
L
S
-----
Q
G
D
E
I
T
V
G
VGV
E
---
S
D
I
L
S
L
V
I
F
I
N
D
K
F
K
Q
C
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
69.33
17%
-53
- C1 -
1GXC
1
CHK2_HUMAN
A:
[41-141]
------------------------
A
N
L
E
C
V
-
N
-----
D
-
N
Y
W
F
G
R
D
K
------
S
-
C
-
E
Y
C
F
D
E
P
-------
L
L
K
R
TDKYR
T
Y
S
K
K
H
F
R
I
F
R
--
E
VGPKN
S
--
Y
I
----
A
Y
I
E
D
-
H
-
S
G
-
N
G
T
F
V
N
T
--
E
L
V
G
K
--------
G
K
R
R
P
-----
L
N
-----
N
N
S
E
I
A
L
S
---
L
SRN
K
V
F
V
F
F
D
L
T
V
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
69.04
18%
-54
- C1 -
1GXC
1
CHK2_HUMAN
A:
[29-144]
-----------
P
-
W
A
R
L
W
A
L
Q
D
G
F
A
N
L
E
C
V
-
N
-----
D
-
N
Y
W
F
G
R
D
K
------
S
-
C
-
E
Y
C
F
D
E
P
L
L
K
R
TDK
Y
R
-------
T
Y
S
K
K
H
F
R
I
F
R
--
E
VGPKN
S
--
Y
I
----
A
Y
I
E
D
-
H
-
S
G
-
N
G
T
F
V
--
N
T
E
L
V
G
K
--------
G
K
R
R
P
-----
L
N
-----
N
N
S
E
I
A
L
S
---
L
---
S
R
N
K
V
F
V
F
F
D
L
T
V
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------