@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0092: (2015-12-21 )
MTPIEYIDRALALVVDRLARYPGYEVLLSAEKQLQYIRSVLLDRSLDRSALHRLTLGSIAVKEFDETDPELSRALKDAYYVGIRTGRGLKVDLP
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------.......---------..10.--.......20..-----...-.--..30---...---.....--------------------------40--........50..--.-..---....60..-...-...70........80-.----------------...---....90...------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------M
T
P
I
E
Y
I
---------
D
R
A
L
A
--
L
V
V
D
R
L
ARYP
G
-----
Y
E
V
-
L
--
L
S
A
E
---
K
Q
L
---
Q
Y
I
R
S
--------------------------
V
L
--LDRSL
D
R
S
A
-
L
H
--
R
-
L
T
---
L
G
S
I
A
V
K
E-FDE-T
D
P
E
L
S
R
A
L
K
D
A
Y
Y
V
-
G
----------------IRT---GR
G
L
KVDLP------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
83.31
31%
-64
- C5 -
3RQ4
7
SV422_HUMAN
A:
[15-97]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
A
T
S
--
L
V
L
D
P
Y
L
G
F
R
T
-----
H
K
M
-
N
--
V
S
P
V
---
P
P
L
RR
Q
Q
H
L
R
S
--------------------------
A
L
E
T
F
L
R
Q
R
D
L
E
A
-
A
Y
--
R
A
L
T
---
L
G
G
W
T
A
R
Y
-
F
Q
S
-
R
G
P
R
Q
E
A
A
L
K
T
H
V
Y
R
-
Y
----------------
L
R
A
---
F
L
P
E
S
G
F
T
I
------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
80.05
18%
-51
- C4 -
1D5Y
2
ROB_ECOLI
A:
[1-119]
----------------------------------------------------------------------------------------------------------------------------------------Q
A
G
I
I
R
D
L
L
I
W
L
---------
E
G
H
L
D
Q
P
L
S
L
D
N
V
A
A
K
A
G
YSKW
H
L
Q
R
-
M
--
F
K
D
V
TGH
A
I
G
---
A
Y
I
R
A
--------------------------
R
R
--
L
S
K
S
A
V
A
L
R
-
L
T
--
A
-
R
P
---
I
L
D
I
A
L
Q
Y
-
R
F
D
-
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
-
T
----------------
P
A
L
---
Y
R
R
S
P
E
W
S
A
FGIRPPLRL
G
--------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
67.71
20%
-81
* C4 *
2A3D
-
?
A:
[1-73]
---------------------------------------------------------------------------------------------------------------------------------------------
M
G
S
W
A
E
F
---------
K
Q
R
L
A
--
A
I
K
T
R
L
Q
A
L
G
G
-----
S
E
A
E
L
--
A
A
F
E
---
K
E
I
---
A
A
F
E
S
--------------------------
E
L
--
Q
A
Y
K
-------------
G
---
K
G
N
P
E
V
E
A
-
L
R
K
-
E
A
A
A
I
R
D
E
L
Q
A
Y
R
H
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
59.40
32%
-93
- C5 -
3FVY
-
DPP3_HUMAN
A:
[28-89]
---------------------------------------------------------------------------------------------------------------------------------------------
L
S
P
T
E
------------
R
L
Y
A
--
Y
H
L
S
R
A
A
W
Y
G
G
-----
L
A
V
-
L
--
L
Q
T
S
---
P
E
A
---
P
Y
I
Y
A
--------------------------
L
L
S
R
L
F
R
A
Q
D
P
D
Q
-
L
H
--
Q
-
H
A
---
L
A
E
G
L
T
E
E
-
E
Y
Q
-
A
F
L
V
Y
A
A
G
V
Y
S
N
M
G
N
-
Y
----------------
K
S
F
---
G
D
T
K
F
V
P
N
L
------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
57.74
15%
-55
- C4 -
3CT8
2
?
A:
[14-146]
----------------------------------------------------------------------------------------------------------------------------------NLYFQGMLH
H
V
E
I
N
V
D
H
L
---------
E
E
S
I
A
--
F
W
D
W
L
L
G
E
-
L
G
-----
Y
E
D
-
Y
--
Q
S
W
S
---
R
G
K
---
S
Y
K
H
G
K
T
Y
L
V
F
V
Q
TEDRFQTPTFHRKRTGLN
H
L
--
A
F
H
A
A
S
R
E
K
-
V
D
--
E
-
L
T
---
Q
K
L
K
E
R
G
D
-
P
I
L
-
Y
E
D
R
H
P
F
A
G
G
P
N
H
Y
A
-
V
----------------
F
C
E
D
PN
R
I
K
V
E
I
V
A
P
------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
55.55
24%
-14
- C4 -
2JMS
-
?
A:
[1-63]
---------------------------------------------------------------------------------------------------------------------------------------------
T
D
P
E
E
H
F
---------
D
P
--------
N
T
N
C
D
Y
T
N
--------------
S
Q
---
D
A
W
---
D
Y
C
T
N
--------------------------
Y
I
--
V
N
S
S
C
-----------------
G
E
I
C
C
N
D
C
F
D
E
-
T
G
T
G
A
C
R
A
--
Q
A
F
G
N
-
S
----------------
C
L
N
---
W
--------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
52.93
28%
-18
- C5 -
4B2T
-
TCPZ_BOVIN
Z:
[122-175]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-----
F
E
A
-----
A
K
E
---
K
A
L
---
Q
F
L
E
Q
--------------------------
V
K
--
V
S
K
E
M
D
R
E
T
-
L
I
--
D
-
V
A
---
R
T
S
L
R
T
K
V
-
H
A
E
-
L
A
D
V
L
T
E
A
V
V
D
S
I
L
A
-
I
----------------
K
K
P
---
I
D
L
F
M
V
E
I
M
------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
52.30
21%
9
- C3 -
1G3P
1
?
?:
[92-217]
------------------------------------------------------------------------------------------------------------------------------------EYGD
T
P
I
P
G
Y
T
Y
I
N
P
L
---------
D
G
T
Y
P
--
P
G
T
E
Q
N
P
A
N
P
N
-----
P
S
L
-
E
--
E
S
Q
P
---
L
N
T
---
F
M
F
Q
N
--------------------------
N
R
--
F
R
N
R
Q
G
A
L
T
-
V
Y
T
G
T
-
V
T
---
Q
G
T
D
P
V
K
T
-
Y
Y
Q
-
Y
T
P
V
S
S
K
A
M
Y
D
A
Y
W
N
-
G
KFRDCA
F
H
S
G
FNEDIF
V
C
E
---
Y
Q
G
Q
S
S
D
L
P
Q
PPVNA------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
52.05
17%
-54
- C4 -
2OP5
4
?
A:
[5-115]
---------------------------------------------------------------------------------------------------------------------------------------------
T
D
E
T
A
F
L
NS
L
F
M
D
F
TS
E
N
E
L
E
--
L
F
L
K
S
L
D
E
V
W
S
-----
E
D
L
-
Y
S
R
L
S
A
A
---
G
L
I
---
R
H
V
I
S
--------------------------
K
V
--
W
N
K
E
Q
H
R
I
S
M
V
F
--
E
-
Y
D
S
K
-
E
G
Y
Q
K
C
Q
E
-
I
I
D
-
K
E
F
G
I
T
L
K
E
K
L
K
K
F
V
F
K
----------------
I
H
N
---
N
R
G
V
V
V
S
E
F
I
R
----------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
49.31
28%
-
- C5 -
3IYG
-
TCPZ_BOVIN
Z:
[114-167]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-----
F
E
A
-----
A
K
E
---
K
A
L
---
Q
F
L
E
Q
--------------------------
V
K
--
V
S
K
E
M
D
R
E
T
-
L
I
--
D
-
V
A
---
R
T
S
L
R
T
K
V
-
H
A
E
-
L
A
D
V
L
T
E
A
V
V
D
S
I
L
A
-
I
----------------
K
K
Q
---
D
E
P
I
D
L
F
M
V
------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
43.75
17%
-4
- C4 -
2LEP
-
GLPG_ECOLI
A:
[1-63]
---------------------------------------------------------------------------------------------------------------------------------------------
M
L
M
I
T
S
F
---------
A
N
-------------------------
P
--
R
V
A
Q
---
A
F
V
---
D
Y
M
A
T
--------------------------
Q
G
--
V
I
L
T
I
Q
Q
H
N
-
Q
S
--
D
-
V
W
---
L
A
D
--
E
S
Q
-
A
E
R
-
V
R
A
E
L
A
R
F
L
E
N
P
A
--------------------------------
D
L
D
------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
41.64
12%
-19
- C5 -
3E98
1
?
A:
[83-134]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
R
---
H
R
L
---
S
Q
L
M
D
--------------------------
V
A
--
R
E
N
D
R
L
F
D
K
-
T
R
--
R
-
L
V
---
L
D
L
L
D
A
T
S
-
L
E
D
-
V
V
S
T
V
E
D
S
L
R
H
E
F
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
40.05
19%
-91
- C5 -
1WKQ
1
GUAD_BACSU
A:
[9-40]
---------------------------------------------------------------------------------------------------------------------------------------------
M
N
H
E
T
F
L
---------
K
R
A
V
T
--
L
A
C
E
G
V
N
A
G
I
G
-----
G
P
F
-
G
--
A
V
I
V
---
K
D
G
---
A
I
I
A
E
--------------------------
G
Q
--
N
N
V
T
T
S
N
D
P
-
T
A
--
H
-
A
E
---
V
T
A
I
R
K
A
C
-
K
V
L
-
G
A
Y
Q
L
D
D
C
I
L
Y
T
S
C
E
-
P
----------------
C
P
M
---
C
L
G
A
I
Y
W
A
R
------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
35.45
12%
-23
- C4 -
1FC6
-
CTPA_ACUOB
A:
[78-463]
VT
S
E
Q
L
L
F
L
E
A
W
R
A
V
D
R
AYVDKSFNGQS
W
F
K
L
R
E
T
Y
L
K
KEPMDR
R
A
Q
T
Y
D
A
I
R
K
M
L
A
V
L
DDPFT
R
F
L
E
P
S
R
L
A
A
L
R
R
GTAGSVTGVG
L
E
I
T
Y
DGGSGKDVVVLTPAPGG
P
A
E
K
A
GARAGDVIVTVDGTAVKGMS
L
Y
D
V
S
D
L
L
Q
G
E
A
D
S
---------
Q
V
E
V
V
--
L
H
A
P
G
A
P
S
N
T
R
-----
T
L
Q
-
L
--
T
R
Q
K
---
V
T
I
---
N
P
V
T
F
--------------------------
T
T
--
C
S
N
V
A
A
A
A
L
-
P
P
--
G
-
A
A
KQ
Q
L
G
Y
V
R
L
A
T
-
F
N
S
N
T
T
A
A
A
Q
Q
A
F
T
E
L
S
K
Q
-
G
----------------
V
A
------
G
L
V
L
D
I
R
NNGGGL
F
P
A
G
V
N
V
A
R
M
L
VDRGDL
V
L
I
A
D
SQGIR
D
I
Y
S
ADGNSIDSA
T
P
L
V
V
L
V
N
RGTA
S
A
S
E
V
L
A
G
A
L
K
D
S
KR
G
L
I
A
G
ERTFGKG
L
I
Q
T
V
V
D
L
SDGSGVAVTV
A
R
Y
Q
T
PAGVDINKIGVSPDVQLDPEVLPTD
L
E
G
V
C
R
V
L
G
SDAAPRLF
12
HHSearch
33.61
31%
43
- C5 -
2WX4
-
?
A:
[23-38]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
N
D
K
E
F
A
N
K
L
H
K
A
Y
L
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
33.34
19%
75
* C5 *
2WX3
-
DCP1A_HUMAN
A:
[556-571]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
N
D
S
S
F
L
S
T
L
H
E
V
Y
L
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
30.35
28%
-8
- C5 -
3S0R
-
?
A:
[5-22]
----------------------------------------------------------------------------------------------------------------------------------------------
S
A
L
E
Y
A
---------
Q
Q
A
L
E
--
K
A
Q
L
A
L
Q
A
A
R
Q
-----
A
L
K
-
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
27.14
21%
-45
- C5 -
3FLO
-
DPOA_YEAST
B:
[121-139]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Q
L
Y
---
N
Q
L
---
L
Y
F
D
S
--------------------------
L
F
--
D
C
E
K
N
K
K
Q
E
-
L
K
--
P
-
I
Y
---
L
P
D
D
L
D
Y
P
-
K
E
Q
-
L
T
E
S
S
I
K
A
L
T
E
Q
N
R
E
-
L
----------------
M
E
T
---
G
R
S
V
V
Q
K
Y
L
------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
26.41
21%
15
- C2 -
1TUL
-
TLP20_NPVAC
A:
[29-61]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
D
E
Y
Y
-
L
K
--
K
-
R
G
---
V
G
A
H
I
I
K
V
-
A
S
S
-
P
---
Q
L
R
L
L
Y
K
N
A
Y
S
-
T
----------------
V
S
C
---
G
N
Y
G
V
L
C
N
L
------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
24.16
25%
63
- C5 -
2XZ2
3
?
A:
[18-29]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
-
Y
--
R
L
M
I
---
S
Q
L
---
M
Y
D
G
L
--------------------------
E
K
--
F
A
M
E
L
S
M
L
V
-
K
A
--
D
-
Q
C
---
A
P
S
E
R
L
L
H
-
V
M
I
-
A
G
M
Q
T
L
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------