@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0163: (2015-12-24 )
MTMNGQPAELHRPIPTLARLPRPVYARAESLRAGSWTSRHRHAWVQLSYAISGVLGVHTAEGSFFAPPQRAIWIPAQLEHEVVTSTRAEMRSLYIRGDACAWAPTRCRVLEVTPLARELIKSFCELPVDYPEGDSAESRLVQVLLDQLRLLPEVAFSLPMPREPRLLRLCQALIDEPTQSLTMGDWAQRLGTSEKTLSRLFQRETGMNYRLWRQRQRLLASLNALEAGDSVTGAALDSGYDSTSAYIAAFKGLFGFTPGELFRQR
Atome Classification :
(20 SA)
------.......----..10........20........30...---..-...40...--.....50...-.....60--...--.....70........80.....----...90........100..----..---...110.......120......-.----------------130.......140.......150......------------------------.160.-......-170....-.-.-.-180.......--.190....----...200-...-...-------..------.-210-...--...-.220....-.--..-230...---....-------240.......250.......260...--------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------MTMNGQ
P
----
A
E
LHRPI
P
T
L
A
RLPR
P
V
Y
A
R
A
E
SLRAG---SW-TSR
H
R
H
A
W
--
V
Q
L
S
YAIS
G
V
-
L
G
V
HTAE--GSF--FAPPQ
R
A
I
W
I
P
A
QL
E
H
E
V
V
T
S
T
----
R
A
E
M
R
S
L
Y
IRGDACAWAP----
T
R
---
C
R
V
L
EV
T
P
L
A
R
E
L
I
K
S
F
C
ELPV-D----------------YPEGD
S
A
E
S
R
L
V
Q
V
L
L
D
Q
L
R
L
L
P
E
V
A
FSL------------------------PMPRE-
P
R
L
L
R
L
-
C
Q
A
L
IDE-P-T-Q-S-L
T
M
G
D
W
A
Q
--
R
LGT
S
E
K
T
----
L
S
R
L
---
F
Q
R
-ETG-------M
N
------
Y
-
R
L
W
-
R
Q
R
--
Q
R
L
-
L
A
S
L
N
A
LE-A--GD-SVTGAA---LDSG-------YD
S
T
S
A
Y
I
A
A
F
K
G
L
FGF
T
P
G
E
L
FRQR--------------
16
HHSearch
71.05
11%
-92
- C3 -
3GBG
1
TCPN_VIBC3
A:
[18-269]
------------------------------------------
D
T
---
Y
I
-
F
N
N
L
Y
I
N
D
--
Y
K
M
F
W
I
D
S
G
I
-
A
K
L
I
D
K
N
CL
V
S
Y
--
E
I
N
S
S
S
I
I
L
L
K
K
N
S
I
Q
R
F
S
L
T
S
LSD
E
N
I
N
V
S
V
I
T
I
S
D
S
F
I
R
S
L
K
S
Y
IL
G
-NKD
L
L
L
W
N
C
E
H
N
D
I
A
V
L
S
E
V
V
N
G
F
R
-
E
----------------
I
N
Y
S
D
E
F
L
K
V
F
F
S
G
F
F
S
K
V
E
K
K
Y
--
N
S
I
F
------------------------
I
T
D
D
L
-
D
A
M
E
K
I
-
S
C
L
V
K
S
D
-
I
-
T
-
R
-
N
-
W
R
W
A
D
I
C
G
--
E
L
R
T
N
R
M
I
----
L
K
K
E
---
L
E
--
S
R
G
-------
V
K
------
F
-
R
E
L
-
I
N
S
--
I
R
I
-
S
Y
S
I
S
L
M
K
-
T
--
G
E
F
K
I
K
Q
I
A
---
Y
Q
S
G
-------
F
A
S
V
S
Y
F
S
T
V
F
K
S
T
M
N
V
A
P
S
E
Y
L
F
M
L
--------------
39
Fugue
69.13
23%
-45
- C1 -
3DSM
1
?
A:
[1-327]
-A
S
G
L
F
I
T
N
E
G
N
F
QYSN
A
T
L
S
Y
Y
D
P
A
T
C
E
V
E
N
E
V
F
Y
R
A
N
G
F
K
L
G
DVA
Q
S
M
V
I
R
D
G
I
G
W
I
V
V
N
N
S
H
V
I
F
A
I
D
I
N
T
F
K
E
V
--
G
R
I
T
G
F
T
S
P
R
Y
I
H
F
L
S
D
--
E
K
A
Y
V
T
Q
I
--------------
W
D
Y
---------------
R
I
F
I
I
N
P
K
T
Y
E
-
I
T
G
Y
I
E
C
P
D
M
D
MES
G
S
T
E
Q
M
V
Q
Y
GK
Y
V
Y
V
N
C
W
S
Y
Q
N
R
I
L
K
I
D
T
E
T
D
K
V
V
D
E
L
T
I
G
I
QPT
S
L
V
M
D
KYN
K
M
W
T
I
T
DGGYEGS
P
Y
G
Y
E
A
P
S
L
Y
R
I
D
A
E
T
F
T
V
E
-
K
-
Q
-
F
-
K
-
F
K
L
G
D
W
P
S
E
V
Q
L
N
G
T
R
D
T
----
L
Y
W
I
N
N
D
I
W
R
M
P
V
E
-------
A
D
RVPVRP
F
-
L
E
F
-
R
D
T
--
K
Y
Y
-
G
L
T
V
N
P
-
N
-
N
--
G
E
-
V
Y
V
A
D
A
---
I
D
Y
Q
Q
Q
G
I
V
Y
R
Y
S
P
Q
G
K
L
I
D
E
F
Y
--
V
G
I
I
P
G
A
F
C
W
K
L
E
H
H
H
H
H--------
38
Fugue
67.64
12%
-73
- C3 -
3GBG
1
TCPN_VIBC3
A:
[4-273]
KKS
F
Q
T
N
V
Y
R
M
S
K
----
F
D
T
Y
I
F
N
N
L
Y
I
N
D
Y
K
M
F
W
I
D
S
G
I
A
K
L
I
---
D
K
-
N
C
L
V
S
Y
E
I
--
N
S
S
S
I
I
L
L
K
K
-
N
S
I
Q
R
F
S
--
L
T
S
--
L
S
D
E
N
----
I
N
V
S
V
-
I
T
I
S
D
S
F
----
I
R
S
L
K
S
Y
I
L
G
N
K
D
-----------------
L
L
L
W
N
C
E
H
N
D
I
A
V
L
S
E
V
V
N
-
G
----------------
F
R
E
I
N
Y
S
D
E
F
L
K
V
F
F
S
G
F
F
S
K
V
E
K
K
Y
N
S
I
------------------------
F
I
T
D
D
-
L
D
A
M
E
K
-
I
S
C
L
V
K
S
-
D
I
T
-
R
-
N
-
W
R
W
A
D
I
C
G
--
E
L
R
T
N
R
M
I
----
L
K
K
E
---
L
E
--
S
R
G
-------
V
K
------
F
-
R
E
L
-
I
N
S
--
I
R
I
-
S
Y
S
I
S
L
M
K
-
T
--
G
E
F
K
I
K
Q
I
A
---
Y
Q
S
G
-------
F
A
S
V
S
Y
F
S
T
V
F
K
S
T
M
N
V
A
P
S
E
Y
L
F
M
L
T
GV-----------
1
PsiBlast_PDB
65.42
28%
-58
- C3 -
3OIO
2
?
A:
[7-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
L
-
T
E
A
V
S
L
-
M
E
A
N
I
E
E
-
P
-------
L
S
T
D
D
I
A
Y
--
Y
V
G
V
S
R
R
Q
----
L
E
R
L
---
F
K
Q
-
Y
L
G
TV
P
S
K
Y
Y
L
E
------
L
-
R
L
N
-
R
A
R
--
Q
L
L
-------
Q
Q
-
T
--
S
K
-
S
I
V
Q
I
G
---
L
A
C
G
-------
F
S
S
G
P
H
F
S
S
T
Y
R
N
H
F
N
I
T
P
R
E
E
R
A
Q
R
--------------
19
HHSearch
62.11
22%
-74
- C3 -
3MN2
2
?
A:
[3-105]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
R
Q
V
-
E
E
Y
I
E
A
N
-
W
-
M
-
R
-
P
-
I
T
I
E
K
L
T
A
--
L
T
G
I
S
S
R
G
----
I
F
K
A
---
F
Q
R
-
S
R
G
-------
Y
S
------
P
-
M
A
F
-
A
K
R
--
V
R
L
-
Q
H
A
H
N
L
L
S
-
D
GA
T
P
T
T
V
T
A
A
A
---
L
S
C
G
-------
F
S
N
L
G
H
F
A
R
D
Y
R
D
M
F
G
E
K
P
S
E
T
L
Q
R
A
--------------
21
HHSearch
61.97
23%
-62
- C3 -
3OIO
2
?
A:
[5-108]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
-
P
K
L
T
E
A
-
V
S
L
M
E
A
N
-
I
-
E
-
E
-
P
-
L
S
T
D
D
I
A
Y
--
Y
V
G
V
S
R
R
Q
----
L
E
R
L
---
F
K
Q
-
Y
L
G
-------
T
V
------
P
-
S
K
Y
-
Y
L
E
--
L
R
L
-
N
R
A
R
Q
L
L
Q
-
Q
--
T
S
K
S
I
V
Q
I
G
---
L
A
C
G
-------
F
S
S
G
P
H
F
S
S
T
Y
R
N
H
F
N
I
T
P
R
E
E
R
A
Q
R
--------------
17
HHSearch
61.54
24%
-60
- C3 -
3W6V
2
?
A:
[37-139]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-
D
P
L
A
E
V
-
V
A
W
A
L
E
H
-
L
-
H
-
E
-
Q
-
F
D
V
E
T
L
A
A
--
R
A
Y
M
S
R
R
T
----
F
D
R
R
---
F
R
S
-
L
T
G
-------
S
A
------
P
-
L
Q
W
-
L
I
T
--
Q
R
V
-
L
Q
A
Q
R
L
L
E
-
T
--
S
D
Y
S
V
D
E
V
A
---
G
R
C
G
-------
F
R
S
P
V
A
L
R
G
H
F
R
R
Q
L
G
S
S
P
A
A
Y
R
A
A
Y
--------------
36
Fugue
60.24
26%
-55
- C3 -
1D5Y
2
ROB_ECOLI
A:
[1-119]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
-
G
I
I
R
D
L
-
L
I
W
L
E
G
H
-
L
-
D
-
Q
-
P
-
L
S
L
D
N
V
A
A
--
K
A
G
Y
S
K
W
H
----
L
Q
R
M
---
F
K
D
-
V
T
G
-------
H
A
------
I
-
G
A
Y
-
I
R
A
--
R
R
L
-
S
K
S
A
V
A
L
R
-
L
--
T
A
R
P
I
L
D
I
A
---
L
Q
Y
R
-------
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
R
S
P
EWSAFGIRPPLRL
G
37
Fugue
59.88
20%
-83
* C3 *
3MN2
2
?
A:
[1-108]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
A
V
R
Q
-
V
E
E
Y
I
E
A
-
N
-
W
M
R
-
P
-
I
T
I
E
K
L
T
A
--
L
T
G
I
S
S
R
G
----
I
F
K
A
---
F
Q
R
-
S
R
G
-------
Y
S
------
P
M
A
F
A
-
K
R
V
R
L
Q
H
A
-
H
N
L
L
S
D
G
A
-
T
--
P
T
-
T
V
T
A
A
A
---
L
S
C
G
-------
F
S
N
L
G
H
F
A
R
D
Y
R
D
M
F
G
E
K
P
S
E
T
L
Q
R
A
RP------------
25
HHSearch
58.95
28%
-64
- C3 -
1D5Y
2
ROB_ECOLI
A:
[3-104]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
I
R
D
L
-
L
I
W
L
E
G
H
-
L
-
D
-
Q
-
P
-
L
S
L
D
N
V
A
A
--
K
A
G
Y
S
K
W
H
----
L
Q
R
M
---
F
K
D
-
V
T
G
-------
H
A
------
I
-
G
A
Y
-
I
R
A
--
R
R
L
-
S
K
S
A
V
A
L
R
-
L
--
T
A
R
P
I
L
D
I
A
---
L
Q
Y
R
-------
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
R
S
P
--------------
20
HHSearch
58.47
24%
-69
- C3 -
2K9S
-
A:
[3-105]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
V
R
E
A
-
C
Q
Y
I
S
D
H
-
L
-
A
-
D
S
N
-
F
D
I
A
S
V
A
Q
--
H
V
C
L
S
P
S
R
----
L
S
H
L
---
F
R
Q
-
Q
L
G
-------
I
S
------
V
-
L
S
W
-
R
E
D
--
Q
R
I
-
S
Q
A
K
L
L
L
S
-
T
--
T
R
M
P
I
A
T
V
G
---
R
N
V
G
-------
F
D
D
Q
L
Y
F
S
R
V
F
K
K
C
T
G
A
S
P
S
E
F
R
A
G
C
--------------
4
PsiBlast_PDB
57.99
30%
-71
- C3 -
1D5Y
2
ROB_ECOLI
A:
[8-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
I
W
-
L
E
G
H
L
D
Q
-
P
-------
L
S
L
D
N
V
A
A
--
K
A
G
Y
S
K
W
H
----
L
Q
R
M
---
F
K
D
-
V
T
G
-------
H
A
------
I
-
G
A
Y
-
I
R
A
--
R
R
L
-
S
K
S
A
V
A
L
R
L
T
--
A
R
-
P
I
L
D
I
A
---
L
Q
Y
R
-------
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
-
L
Y
R
R
S
--------------
22
HHSearch
57.87
20%
-70
- C3 -
3OOU
1
?
A:
[4-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-
P
I
I
Q
N
V
-
L
S
Y
I
T
E
H
-
F
-
S
-
E
-
G
-
M
S
L
K
T
L
G
N
--
D
F
H
I
N
A
V
Y
----
L
G
Q
L
---
F
Q
K
-
E
M
G
-------
E
H
------
F
-
T
D
Y
-
L
N
R
--
Y
R
V
-
N
Y
A
K
E
E
L
L
-
Q
--
T
K
D
N
L
T
I
I
A
---
G
K
S
G
-------
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
H
T
G
E
T
P
N
R
Y
R
K
I
H
--------------
24
HHSearch
56.24
16%
-61
- C3 -
3LSG
1
?
A:
[3-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
E
L
I
-
Q
N
I
I
E
E
S
-
Y
T
D
-
S
-
Q
-
F
T
L
S
V
L
S
E
--
K
L
D
L
S
S
G
Y
----
L
S
I
M
---
F
K
K
-
N
F
G
-------
I
P
------
F
-
Q
D
Y
-
L
L
Q
--
K
R
M
-
E
K
A
K
L
L
L
L
-
T
--
T
E
L
K
N
Y
E
I
A
---
E
Q
V
G
-------
F
E
D
V
N
Y
F
I
T
K
F
K
K
Y
Y
Q
I
T
P
K
Q
Y
R
E
----------------
2
PsiBlast_PDB
55.71
25%
-51
- C3 -
2K9S
-
A:
[2-102]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
N
R
V
R
E
A
-
C
Q
Y
I
S
D
H
-
L
-
A
-
D
-
S
N
F
D
I
A
S
V
A
Q
--
H
V
C
L
S
P
S
R
----
L
S
H
L
---
F
R
Q
-
Q
L
G
-------
I
S
------
V
-
L
S
W
-
R
E
D
--
Q
R
I
S
Q
A
K
L
L
L
S
T
-
T
--
R
M
-
P
I
A
T
V
G
---
R
N
V
G
-------
F
D
D
Q
L
Y
F
S
R
V
F
K
K
C
T
G
A
S
P
S
E
F
R
A
G
C
--------------
18
HHSearch
54.32
18%
-54
- C3 -
1BL0
2
MARA_ECOLI
A:
[9-112]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
-
I
T
I
H
S
I
-
L
D
W
I
E
D
N
-
L
-
E
-
S
-
P
-
L
S
L
E
K
V
S
E
--
R
S
G
Y
S
K
W
H
----
L
Q
R
M
---
F
K
K
-
E
T
G
-------
H
S
------
L
-
G
Q
Y
-
I
R
S
--
R
K
M
-
T
E
I
A
Q
K
L
K
-
E
--
S
N
E
P
I
L
Y
L
A
---
E
R
Y
G
-------
F
E
S
Q
Q
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
M
T
N
--------------
3
PsiBlast_PDB
50.14
27%
-37
- C3 -
3OOU
-
?
A:
[6-101]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
I
Q
N
V
L
S
Y
-
I
-
T
-
E
-
H
-
F
S
E
G
M
S
L
K
--
T
L
G
N
D
F
H
I
N
A
V
Y
L
G
Q
L
---
F
Q
K
-
E
M
G
-------
E
H
------
F
-
T
D
Y
-
L
N
R
--
Y
R
V
N
Y
A
K
E
E
L
L
Q
-
T
--
K
D
-
N
L
T
I
I
A
---
G
K
S
G
-------
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
H
T
G
E
T
P
N
R
Y
R
K
I
H
--------------
12
PsiBlast_PDB
48.90
24%
-37
- C3 -
3MN2
2
?
A:
[29-105]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
S
S
R
G
----
I
F
K
A
---
F
Q
R
-
S
R
G
-------
Y
S
------
P
-
M
A
F
-
A
K
R
--
V
R
L
-
Q
H
A
H
N
L
L
S
-
D
--
G
A
-
T
P
T
T
V
T
A
A
A
L
S
C
G
-------
F
S
N
L
G
H
F
A
R
D
Y
R
D
M
F
G
E
K
P
S
E
T
L
Q
R
A
--------------
8
PsiBlast_PDB
45.73
38%
-78
- C3 -
2RAS
-
?
A:
[15-53]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
V
D
V
-
A
Q
A
I
V
E
E
R
G
-
G
-
A
-
G
-
L
T
L
S
E
L
A
A
--
R
A
G
I
S
Q
A
N
----
L
S
R
Y
---
F
E
T
-
R
E
D
-------
L
M
------
E
-
A
I
A
-
D
Y
W
--
F
H
P
-
M
V
E
I
M
E
D
V
-
L
--
A
S
-
D
L
P
P
R
R
---
K
M
Y
E
-------
F
F
A
R
R
F
V
V
M
R
R
K
W
E
A
D
P
V
K
L
Q
T
Y
I
E
V
--------------
9
PsiBlast_PDB
45.64
25%
-14
- C3 -
1BL0
2
MARA_ECOLI
A:
[28-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
L
E
K
V
S
E
--
R
S
G
Y
S
K
W
H
----
L
Q
R
M
---
F
K
K
-
E
T
G
-------
H
S
------
L
-
G
Q
Y
I
R
S
R
--
K
M
T
-
E
I
A
Q
K
L
K
E
-
S
--
N
E
-
P
I
L
Y
L
A
---
E
R
Y
G
-------
F
E
S
Q
Q
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
M
T
N
--------------