@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0170: (2015-12-24 )
MSDLHIPGTQSTPAIQGDWQAGRLSMQGDSYPENSYELFGQVIDWVERFLADGQRPLELDLRLLYLNTSSIKAMMDILDLLEEAHQGGRPVSLRWHYDRRNERVAELAEEFREDCSFPFAIQAHDE
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------........--.10....----....20--.......--------.30....----....40-.....-...50---..--..-..---------.--.60----.-...-....70...--..------------...80.....---------.-.-.--------90-........100...-----....110...---....120....---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------MSDLHIPG--TQSTPAI----QGDWQA--G
R
L
SMQG--------DSYP
E
N
S
----
Y
E
L
F
G
Q
-
V
I
D
W
V
-
E
R
F
L
A---DG--QR-
P
L
---------
E
--
L
D
L
----
R
-
L
L
Y
-LN
T
S
S
I
K
A
M
--
M
D
------------
I
L
D
L
L
E
E
A
HQ---------G-G-R--------
P
V
-
S
L
R
W
H
YDR
R
N
E
R
V
A
-----
E
L
A
E
E
F
R
E
DC---SF
P
F
A
I
QAHDE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
56
Fugue
66.44
19%
-54
- C1 -
1HV9
4
GLMU_ECOLI
A:
[4-451]
N
A
M
S
V
V
I
L
AAGKGTRMYSDLPKVLHTLAGKA
M
V
Q
H
V
I
D
A
A
N
E
L
GAA
H
V
H
L
V
Y
G
H
G
G
D
L
L
K
Q
A
LKDDN
L
N
W
V
L
QAEQLG
T
G
H
A
M
Q
Q
A
APFFADD
E
D
I
L
M
L
Y
GDVPLIS
V
E
T
L
Q
R
L
R
D
A
K
P
Q
G
--
G
I
G
L
L
T
V
----
K
L
D
D
P
T
G
Y
G
R
I
T
R
E
N
-----------------------
G
K
-
V
T
G
I
V
-
E
H
K
D
A
---
T
D
E
Q
R
Q
-
I
Q
---------
E
--
I
N
T
----
G
-
I
L
I
-
A
N
G
A
D
M
K
R
W
--
L
A
K
LTNNNAQGEYY
I
T
D
I
I
A
L
A
Y
Q
---------
E
-
G
-
R
--------
E
I
-
V
A
V
---------
H
P
-----
Q
R
L
S
E
V
E
G
V
N
---
N
R
L
Q
L
S
R
L
E
R
V
Y
Q
S
E
Q
A
E
K
L
L
L
A
GVMLRDPARFDLR
G
T
L
T
H
G
R
D
V
E
I
D
T
N
V
I
I
E
G
N
V
T
L
G
H
R
V
K
I
G
T
G
C
V
I
K
N
S
V
I
G
D
D
C
E
I
S
P
Y
T
V
V
E
D
A
N
L
A
A
A
C
T
I
G
PF
A
R
L
R
PG
A
E
L
L
E
G
A
H
V
G
N
F
V
E
M
K
K
A
R
L
G
KGSKAGHL
T
Y
L
G
D
A
E
I
G
D
N
V
N
I
G
A
GTITCNYDGA
N
K
F
K
T
I
I
G
D
D
V
F
V
G
S
D
T
Q
L
V
A
P
V
T
V
G
K
G
A
T
I
A
AGTTVT
R
N
V
G
EN
A
L
A
I
SRVP
Q
T
Q
K
E
GWRR
63
Fugue
62.67
13%
-94
- C8 -
1QU9
-
RIDA_ECOLI
A:
[2-128]
-------------------------------------------------------------------------------------------------------------------
S
K
T
I
A
T
--
E
N
A
P
A
A
I
GPYV
Q
G
V
D
L
G
--
N
M
I
I
T
S
G
QIPVNPKT
G
E
V
P
A
D
V
----
A
A
Q
A
R
Q
-
S
L
D
N
V
-
K
A
I
V
E
---
A
A
--
G
L
-
K
V
---------
G
DI
V
K
T
----
T
-
V
F
V
-
K
D
L
N
D
F
A
T
V
--
N
A
------------
T
Y
E
A
F
F
T
E
H
N
---------
A
-
T
-
F
--------
P
------------
A
R
S
------
V
E
V
A
R
L
P
K
D
V
---
K
I
E
I
E
A
I
A
V
R
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
56.91
18%
-76
* C6 *
1TH8
1
SP2AA_GEOSE
B:
[10-81]
----------------------------------------------------------------------------------------------------------------------------------------
K
Q
D
V
--
L
I
V
R
L
S
G
--------
E
L
D
H
H
T
A
----
E
E
L
R
E
Q
-
V
T
D
V
L
-
E
N
------
R
A
--
I
R
-
H
I
---------
V
--
L
N
L
----
G
Q
L
T
F
-
M
D
S
S
G
L
G
V
I
--
L
G
------------
R
Y
K
Q
I
K
N
------------
V
-
G
-
G
--------
Q
M
-
V
V
C
A
V
S
P
A
V
K
R
L
F
D
-----
M
S
G
L
F
K
I
I
R
V
---
E
A
D
E
Q
F
A
L
Q
A
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
HHSearch
56.85
18%
-68
- C6 -
2KA5
-
Y1081_THEMA
A:
[17-91]
--------------------------------------------------------------------------------------------------------------------------------------
K
I
V
D
D
V
--
V
I
L
M
P
N
K
--------
E
L
N
I
E
N
A
----
H
L
F
K
K
W
-
V
F
D
E
F
-
L
N
------
K
G
--
Y
N
-
K
I
---------
F
--
L
V
L
----
S
D
V
E
S
-
I
D
S
F
S
L
G
V
I
--
V
N
------------
I
L
K
S
I
S
S
S
-------------
G
-
G
--------
F
F
-
A
L
V
S
P
N
E
K
V
E
R
V
L
S
-----
L
T
N
L
D
R
I
V
K
I
---
Y
D
T
I
S
E
A
M
E
E
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
58
Fugue
56.54
24%
-29
- C2 -
2JPF
-
?
A:
[1-106]
-----------------------------------------------------------------------------------------------------------------
K
Q
Q
L
Q
-
E
H
--
A
P
S
H
A
N
L
----
D
V
K
W
L
D
--
G
L
----------------
R
A
G
S
----
M
A
L
Q
G
D
-
V
K
V
W
M
-
Q
N
L
E
D
---
L
H
--
T
R
R
P
D
---------
E
--
F
T
A
----
R
-
L
Q
-----
Q
S
T
D
A
L
--
Y
S
------------
H
L
E
A
Q
W
A
K
Q
H
---------
G
-
T
-
P
--------
P
T
A
S
D
V
V
G
M
P
Q
W
Q
E
Y
T
A
-----
M
L
R
E
R
F
A
G
L
D
---
T
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
56.50
22%
-62
- C6 -
1SBO
-
Y1442_THEMA
A:
[11-84]
----------------------------------------------------------------------------------------------------------------------------------------
Q
D
D
K
--
A
I
V
R
V
Q
G
--------
D
I
D
A
Y
N
S
----
S
E
L
K
E
Q
-
L
R
N
F
I
-
S
T
------
T
S
--
K
K
-
K
I
---------
V
--
L
D
L
----
S
S
V
S
Y
-
M
D
S
A
G
L
G
T
L
--
V
V
------------
I
L
K
D
A
K
I
------------
N
-
G
-
K
--------
E
F
-
I
L
S
S
L
K
E
S
I
S
R
I
L
K
-----
L
T
H
L
D
K
I
F
K
I
---
T
D
T
V
E
E
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
53
HHSearch
56.45
19%
-128
- C6 -
1XDP
3
PPK_ECOLI
A:
[346-402]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
H
T
F
E
H
-
V
L
E
L
L
-
R
Q
A
S
F
---
D
P
---
S
-
V
L
---------
A
--
I
K
I
----
N
-
I
Y
R
-
V
A
K
D
S
-------
R
------------
I
I
D
S
M
I
H
A
A
H
---------
N
-
G
-
K
--------
K
V
-
T
V
V
V
E
L
Q
A
R
F
D
E
E
A
-----
N
I
H
W
A
K
R
L
T
E
---
A
G
V
H
V
I
F
S
A
P
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
62
Fugue
55.06
12%
-77
- C4 -
3WQB
-
?
B:
[30-148]
------------------------------------------------------------------------------------------------------------------
S
T
I
E
V
N
G
--
Q
T
Y
L
I
T
L
----
R
----
R
--
G
D
V
L
M
Q
G
--------
A
--
A
S
P
E
----
L
T
V
S
G
T
-
L
L
V
E
A
D
D
A
S
A
K
---
A
L
--
A
T
-
R
H
---------
G
--
L
N
F
----
K
-
Q
S
S
-
G
G
I
A
L
L
E
A
K
PG
T
D
------------
L
N
A
I
A
T
K
L
K
S
---------
E
-
G
-
V
--------
N
V
-
Q
I
E
L
S
G
A
E
Q
Q
P
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
61
Fugue
54.80
14%
-67
* C8 *
3FQ6
2
?
A:
[2-115]
----------------------------------------------------------------------------------------------------------------------------------------
N
A
T
A
--
F
V
P
A
L
V
A
--------
S
G
L
P
N
E
K
----
F
C
F
E
G
-----
F
L
-
P
Q
K
K
G
---
R
Q
--
T
R
-
L
K
---------
A
--
L
A
E
----
E
-
H
R
T
M
V
F
Y
E
S
P
H
R
L
--
L
K
------------
T
L
T
Q
F
A
E
Y
F
G
---------
T
-
E
-
R
--------
Q
A
-
T
V
S
R
E
I
S
K
L
H
E
E
T
V
R
G
S
L
A
E
L
I
E
H
F
T
A
T
E
P
R
G
E
I
V
I
V
L
A
G
I
D
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
59
Fugue
53.54
16%
-59
- C7 -
1Y5O
-
TFB1_YEAST
A:
[1-115]
------------------------------------------------------------------------------------------------------------------------
P
--
S
H
S
G
A
A
I
----
F
E
K
-
V
S
--
G
I
I
A
I
N
E
--------
D
V
S
P
------------
A
-
E
L
T
W
R
-
S
---
T
---
D
G
--
D
K
-
V
H
---------
T
--
V
V
L
STID
K
-
L
Q
A
-
T
P
A
S
S
E
K
M
M
--
L
R
------------
L
I
G
K
V
D
E
S
K
K
RKDNEGNEV
V
-
P
-
K
--------
P
Q
-
R
H
M
F
S
F
N
N
-----
R
-----
T
V
M
D
N
I
K
M
T
L
---
Q
Q
I
I
S
R
Y
K
D
A
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
HHSearch
51.96
13%
-78
- C6 -
3T6O
-
?
A:
[14-88]
------------------------------------------------------------------------------------------------------------------------------------------
Q
V
--
T
V
I
S
F
P
A
VFQ-----
R
L
R
E
T
E
V
----
E
Q
I
A
S
T
-
F
L
A
A
M
-
Q
G
------
A
Q
--
P
R
-
K
V
---------
L
--
I
D
L
----
E
G
V
E
F
-
F
G
S
S
F
I
E
L
L
--
V
R
------------
G
W
K
R
I
K
E
D
-----------
Q
-
Q
-
G
--------
V
F
-
A
L
C
S
V
S
P
Y
C
V
E
V
L
Q
-----
V
T
H
I
D
E
V
W
P
R
---
Y
S
T
K
Q
E
A
L
L
A
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
55
Fugue
49.70
15%
-37
* C7 *
1FLC
2
?
B:
[4-165]
-----------------------------------------------------------------------------------------------------------------
I
D
D
L
I
I
G
V
L
F
V
A
I
V
E
T
G
----
I
G
G
Y
L
L
--
G
S
R
K
E
S
G
--------
G
G
V
T
K
E
S
AEKG
F
E
K
I
G
N
-
D
I
Q
I
L
-
K
S
S
I
N
---
I
A
--
I
E
-
K
L
NDR
I
S
H
D
EQ
A
--
I
R
D
----
L
-
T
L
E
-
I
E
N
A
R
S
E
A
L
--
L
G
------------
E
L
G
I
I
R
A
L
L
V
---------
G
-
N
-
I
--------
S
I
-
G
L
Q
E
S
L
W
E
L
A
S
E
I
T
-----
N
R
A
G
D
L
A
V
E
V
---
S
P
G
C
W
I
I
D
N
N
I
CD
Q
S
C
Q
N
F
I
FKFNE
T
A
P
V
P
TI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
57
Fugue
48.98
16%
-33
- C5 -
1Q87
-
?
A:
[147-345]
-----------------------------------------------------------------------------------------------S
M
C
I
G
NST
P
N
E
Q
E
T
F
R
A
K
V
D
E
I
W
F
R
L
--
T
Q
K
T
D
-------
G
T
V
M
R
--
D
F
L
I
E
K
A
--------
A
E
Y
F
K
Q
P
----
E
Q
P
K
Q
N
-
A
I
E
V
I
-
S
A
I
M
A
PQE
E
Q
--
T
K
-
S
K
---------
A
--
D
L
Y
----
K
-
F
L
A
-
M
F
G
P
Y
E
T
I
M
--
L
K
------------
I
A
S
L
L
L
I
S
N
N
---------
K
-
G
-
H
WLTFDPQD
S
I
-
S
G
W
F
D
Q
N
E
P
N
C
L
I
L
-----
K
T
P
T
G
I
R
K
I
W
---
N
K
P
L
-
I
E
A
T
G
Q
YLMDENGEKYDS
W
D
K
Y
F
E
M
KPIAYPTFAPMHHHH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
HHSearch
48.00
13%
-114
- C6 -
2ZWI
1
?
A:
[36-110]
-------------------------------------------------------------------------------------------------------------------------------------------
W
--
S
R
Y
P
I
N
D
E
T
L
-----
L
E
S
I
N
G
S
----
F
F
K
N
R
P
E
L
I
K
S
L
-
D
S
M
I
L
---
T
N
---
E
-
I
K
---------
K
--
V
I
I
----
N
-
G
----
N
T
L
W
A
V
D
V
--
V
N
------------
I
I
K
S
I
-
E
A
L
G
---------
K
-
K
-
T
--------
E
I
-
E
L
N
F
Y
D
D
G
S
A
E
Y
V
R
-----
L
Y
D
F
S
R
L
P
E
S
---
E
Q
E
Y
K
I
S
L
S
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
HHSearch
46.75
9%
-100
- C6 -
1H4X
1
SP2AA_LYSSH
A:
[13-79]
----------------------------------------------------------------------------------------------------------------------------------------------
V
V
I
R
L
F
G
--------
E
L
D
H
H
A
V
----
E
Q
I
R
A
K
-
I
S
T
A
I
-
F
Q
G
------
A
--
V
T
-
T
I
---------
I
--
W
N
F
E---
R
-
L
S
F
-
M
D
S
S
G
V
G
L
V
--
L
G
------------
R
M
R
E
L
---
E
A
---------
V
-
A
-
G
--------
R
T
-
I
L
L
N
P
S
P
T
M
R
K
V
F
Q
-----
F
S
G
L
G
P
W
M
M
D
---
A
T
E
E
E
A
I
D
R
V
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
60
Fugue
43.51
15%
-43
- C3 -
4GIW
-
RUSC1_HUMAN
A:
[7-190]
-------------------------------------------------------------Q
K
K
G
L
L
I
A
V
S
V
S
V
D
K
I
I
S
H
F
GAARN
L
V
Q
K
A
Q
L
G
DSRLSP
D
V
G
H
L
V
L
T
T
L
C
P
A
L
H
A
L
V
A
D
G
LK
P
F
R
K
D
L
I
----
T
G
Q
R
R
S
--
S
P
W
S
V
V
E
--------
A
S
V
T
R
S
L
----
G
T
L
Y
S
Q
-
V
S
R
L
A
-
P
L
------
S
S
--
S
R
-
S
R
---------
F
--
H
A
F
----
I
-
L
G
L
-
L
N
T
K
Q
L
E
L
W
--
F
S
------------
S
L
Q
E
D
A
G
L
L
S
---------
L
M
Y
M
P
--------
T
G
-
F
F
S
L
A
R
G
G
C
P
S
L
S
T
-----
E
L
L
L
L
L
Q
P
L
S
---
V
L
T
F
H
L
D
L
L
F
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
43.39
15%
-78
- C6 -
3NY7
1
?
A:
[10-85]
-------------------------------------------------------------------------------------------------------------------------------
V
V
V
----
D
V
P
D
D
V
--
L
V
L
R
V
I
G
--------
P
L
F
F
A
A
A
----
E
G
L
F
T
D
-
L
E
S
R
L
-----
E
----
G
--
K
R
-
I
V
---------
I
--
L
K
W
----
D
A
V
P
V
-
L
D
A
G
G
L
D
A
F
--
Q
R
------------
F
V
K
R
L
P
-------------
E
-
G
-
C
--------
E
L
-
R
V
C
N
V
E
F
Q
P
L
R
T
M
A
-----
R
A
G
I
Q
P
I
P
G
R
---
L
A
F
F
P
N
R
R
A
A
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
41.79
31%
-68
- C6 -
4QRQ
1
1B08_HUMAN
A:
[143-180]
---------------------------------------------------------------------------------------------------------------------------------
T
----
Q
R
K
W
E
A
--
A
R
V
A
E
Q
D
--------
R
A
Y
----------
L
E
G
T
-
C
V
E
W
L
-
R
R
Y
L
E
---
N
G
--
K
D
-
T
L
---------
E
--
R
A
D
----
P
-
P
K
T
-
H
V
T
H
H
P
I
S
D
--
H
E
------------
A
T
L
R
C
W
A
L
G
F
---------
Y
-
P
-
A
--------
E
I
-
T
L
T
W
Q
R
D
G
E
D
Q
T
Q
D
-----
T
E
L
V
E
T
R
P
A
G
---
D
R
T
F
Q
K
W
A
A
V
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
40.78
31%
-74
- C6 -
3LN4
1
1B41_HUMAN
A:
[143-180]
---------------------------------------------------------------------------------------------------------------------------------
T
----
Q
R
K
W
E
A
--
A
R
V
A
E
Q
D
--------
R
A
Y
----------
L
E
G
T
-
C
V
E
W
L
-
R
R
Y
L
E
---
N
G
--
K
D
-
T
L
---------
E
--
R
A
D
----
P
-
P
K
T
-
H
V
T
H
H
P
I
S
D
--
H
E
------------
A
T
L
R
C
W
A
L
G
F
---------
Y
-
P
-
A
--------
E
I
-
T
L
T
W
Q
R
D
G
E
D
Q
T
Q
D
-----
T
E
L
V
E
T
R
P
A
G
---
D
R
T
F
Q
K
W
A
A
V
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
40.12
36%
-84
- C6 -
2HH6
-
?
A:
[55-76]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
I
F
--
G
G
------------
I
L
D
L
F
E
E
G
A
A
---------
E
-
G
-
K
--------
K
V
-
T
D
L
T
G
E
D
V
A
A
F
C
D
E
-----
L
M
K
D
T
K
T
W
M
D
---
K
Y
R
T
K
L
N
D
S
I
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------