@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0171: (2015-12-24 )
METLDLLAMRESYTRQRILLCFNGPISRSLIEEIGHALRNYLHAEQAKPSEAMDVFAVYIEMTQNIRHYANLKGYGEHEAAATVAIARNEDGHYVVSAGNLVERDDGQSLVRSIQAIANLDKAALKAAYKEQLRRPRDSGCASGAGLGLLDIARKSSEPLAASLKEQPDGRAFFSLRAVI
Atome Classification :
(20 SA)
----------.........10------........20........30........40..--...-...-.50......----------..60-.......-.70........80........--------90.-.......100.......110.......120..------.-.....130..---.....140.......150......-.---160.....-----..170.......180-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------ME
T
L
D
L
L
A
M
R
E
------SYTR
Q
R
I
L
L
C
FNGPI
S
R
S
L
I
E
E
I
G
H
A
L
R
N
-
Y
L
--
H
A
E-QAK-
P
S
E
A
M
D
V
F
A
----------
V
Y
I
E
-
M
T
Q
N
I
R
H
-
Y
ANLKGYGEHE
A
A
A
T
V
A
I
A
RN--------EDG-
H
Y
V
V
SAGNLVERDD
G
Q
S
L
V
R
S
I
Q
A
I
A
N
L
-
D
K
A
------
A
-
L
K
A
A
Y
K
E
Q
LR---RPRDSGCASGAG
L
G
L
L
D
I
A
RKSSE-
P
---
L
A
A
S
L
KEQ-----PDG
R
A
F
F
S
L
R
AVI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
80.91
18%
-64
* C6 *
4J1Q
1
A:
[20-445]
---------H
M
E
R
L
M
L
E
P
V
W
E
KQNEEL
S
Y
T
E
H
I
I
V
L
F
---
E
T
E
R
S
V
T
D
S
I
A
S
H
M
K
D
-
A
R
--
V
I
T
L
N
E
A
-
V
G
H
I
A
E
R
Y
Q
----------
C
Y
M
Q
N
I
F
E
L
L
Q
S
-
K
V
R
K
L
S
A
G
R
I
I
I
Q
A
I
V
P
L
E
K
E
--------
K
Q
L
-
F
A
G
V
S
G
L
F
K
T
A
E
I
E
F
S
K
L
T
A
Q
V
I
E
I
E
K
P
-
E
E
M
------
I
D
L
H
L
K
L
K
D
D
S
R
---
R
P
F
D
K
Q
I
R
Y
E
A
G
Y
R
F
V
K
G
W
R
E
M
V
D
-
T
---
L
H
M
P
W
R
D
E
G
V
Y
L
I
T
G
G
A
G
S
L
G
L
L
F
A
K
E
I
A
N
R
T
GR
S
T
I
V
L
T
G
RSVLS
E
D
K
E
N
E
L
E
A
L
R
S
I
G
A
E
V
V
Y
READVSD
Q
H
A
V
R
H
L
L
E
E
I
K
E
R
Y
GTLNGIIHG
A
G
S
S
K
D
R
F
IIHKT
N
E
E
F
Q
E
V
L
QPK
V
S
G
L
L
H
V
D
E
C
S
KDFPLD
F
F
I
F
FSSVSGCLGNAGQ
A
D
Y
A
A
A
N
S
F
M
D
A
F
A
E
Y
R
R
S
L
A
A
S
KK
R
F
G
S
T
I
S
F
NWPLWEEGGMQVGAED
E
K
R
M
L
K
T
T
GMVPMP
T
D
S
G
L
K
A
F
Y
Q
G
I
V
S
DKP
Q
V
F
V
M
E
G
Q
L
Q
K
M
K
Q
K
LL
42
Fugue
65.04
20%
-25
- C2 -
2Y9W
1
?
C:
[9-150]
----------------
L
D
L
P
G
------
T
R
I
L
N
G
A
N
W
A
N
N
S
A
T
S
G
-----------
T
-
L
I
--
I
F
D
-
Q
S
T
-
P
G
Q
D
A
D
R
W
L
----------
I
H
N
Y
-
L
--
D
G
Y
K
-
I
F
N
M
G
S
----
N
N
W
A
S
V
-------------
S
R
G
-
N
T
V
L
G
V
S
E
F
----
D
G
Q
T
C
K
W
S
I
E
Y
S
G
N
G
-
E
---------------
E
F
W
I
R
---
V
P
R
E
G
G
-----
G
G
A
V
W
T
I
K
P
A
S
S
Q
G
P
---
T
T
V
F
L
D
L
L
-----
K
E
T
D
P
N
Q
R
I
K
F
A
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
63.92
16%
1
- C3 -
1VK5
8
RDM1_ARATH
A:
[36-156]
----------
G
S
L
L
R
R
A
E
M
Y
Q
------
D
Y
M
K
Q
V
P
I
P
T
N
R
G
S
L
I
P
--------------------------------
F
T
----------
S
W
V
G
-
L
S
I
S
M
K
Q
-
L
Y
-----
G
Q
P
L
H
Y
L
T
N
V
L
L
Q
R
--------
W
D
Q
-----------
S
R
F
G
T
D
S
E
E
Q
R
L
D
S
I
I
H
P
-
T
K
A
------
E
-
A
T
I
W
L
V
E
E
I
H
---
R
L
T
-----------------
P
S
H
L
-
H
---
M
A
L
L
W
R
S
D
-----
P
M
Y
H
S
F
I
D
P
I
F
P
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
60.37
32%
-36
- C5 -
4K5P
1
AMP1_PLAFQ
A:
[777-822]
-------------------------------------------
R
K
D
I
Y
E
I
L
K
K
L
E
N
-
E
V
--
L
K
D
-
S
K
N
-
P
N
---
D
I
R
A
----------
V
Y
L
P
-
F
T
N
N
L
R
R
-
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
K
T
D
K
--------
F
N
P
-
M
V
A
T
Q
L
C
E
P
F
K
L
W
N
K
L
D
T
K
R
Q
E
L
M
L
N
E
M
-
N
T
M
------
L
-
Q
E
P
Q
I
S
N
N
L
K
---
E
Y
L
L
R
L
T
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
60.32
32%
-34
- C5 -
4R5T
2
AMP1_PLAFQ
A:
[784-829]
-------------------------------------------
R
K
D
I
Y
E
I
L
K
K
L
E
N
-
E
V
--
L
K
D
-
S
K
N
-
P
N
---
D
I
R
A
----------
V
Y
L
P
-
F
T
N
N
L
R
R
-
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
K
T
D
K
--------
F
N
P
-
M
V
A
T
Q
L
C
E
P
F
K
L
W
N
K
L
D
T
K
R
Q
E
L
M
L
N
E
M
-
N
T
M
------
L
-
Q
E
P
Q
I
S
N
N
L
K
---
E
Y
L
L
R
L
T
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
60.09
32%
-36
- C5 -
4X2U
1
AMP1_PLAFQ
A:
[777-822]
-------------------------------------------
R
K
D
I
Y
E
I
L
K
K
L
E
N
-
E
V
--
L
K
D
-
S
K
N
-
P
N
---
D
I
R
A
----------
V
Y
L
P
-
F
T
N
N
L
R
R
-
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
K
T
D
K
--------
F
N
P
-
M
V
A
T
Q
L
C
E
P
F
K
L
W
N
K
L
D
T
K
R
Q
E
L
M
L
N
E
M
-
N
T
M
------
L
-
Q
E
P
Q
I
S
N
N
L
K
---
E
Y
L
L
R
L
T
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
59.81
32%
-36
- C5 -
3Q44
1
AMP1_PLAFQ
A:
[778-823]
-------------------------------------------
R
K
D
I
Y
E
I
L
K
K
L
E
N
-
E
V
--
L
K
D
-
S
K
N
-
P
N
---
D
I
R
A
----------
V
Y
L
P
-
F
T
N
N
L
R
R
-
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
K
T
D
K
--------
F
N
P
-
M
V
A
T
Q
L
C
E
P
F
K
L
W
N
K
L
D
T
K
R
Q
E
L
M
L
N
E
M
-
N
T
M
------
L
-
Q
E
P
Q
I
S
N
N
L
K
---
E
Y
L
L
R
L
T
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
59.40
32%
-31
- C5 -
4K5O
1
AMP1_PLAFQ
A:
[777-822]
-------------------------------------------
R
K
D
I
Y
E
I
L
K
K
L
E
N
-
E
V
--
L
K
D
-
S
K
N
-
P
N
---
D
I
R
A
----------
V
Y
L
P
-
F
T
N
N
L
R
R
-
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
K
T
D
K
--------
F
N
P
-
M
V
A
T
Q
L
C
E
P
F
K
L
W
N
K
L
D
T
K
R
Q
E
L
M
L
N
E
M
-
N
T
M
------
L
-
Q
E
P
Q
I
S
N
N
L
K
---
E
Y
L
L
R
L
T
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
59.40
32%
-39
- C5 -
3EBG
2
AMP1_PLAFQ
A:
[777-822]
-------------------------------------------
R
K
D
I
Y
E
I
L
K
K
L
E
N
-
E
V
--
L
K
D
-
S
K
N
-
P
N
---
D
I
R
A
----------
V
Y
L
P
-
F
T
N
N
L
R
R
-
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
K
T
D
K
--------
F
N
P
-
M
V
A
T
Q
L
C
E
P
F
K
L
W
N
K
L
D
T
K
R
Q
E
L
M
L
N
E
M
-
N
T
M
------
L
-
Q
E
P
Q
I
S
N
N
L
K
---
E
Y
L
L
R
L
T
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
59.38
32%
-38
- C5 -
3Q43
1
AMP1_PLAFQ
A:
[778-823]
-------------------------------------------
R
K
D
I
Y
E
I
L
K
K
L
E
N
-
E
V
--
L
K
D
-
S
K
N
-
P
N
---
D
I
R
A
----------
V
Y
L
P
-
F
T
N
N
L
R
R
-
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
K
T
D
K
--------
F
N
P
-
M
V
A
T
Q
L
C
E
P
F
K
L
W
N
K
L
D
T
K
R
Q
E
L
M
L
N
E
M
-
N
T
M
------
L
-
Q
E
P
Q
I
S
N
N
L
K
---
E
Y
L
L
R
L
T
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
Fugue
58.78
15%
24
- C6 -
3WOZ
-
CLAP2_MOUSE
A:
[4-228]
TED
V
A
E
V
L
N
R
C
A
S
S
N
W
S
E
R
K
E
------
G
L
L
G
L
Q
N
L
L
K
N
Q
R
T
L
S
R
I
E
L
K
R
L
C
E
I
F
T
R
M
F
A
DP
H
G
K
-
V
F
S
M
F
L
E
T
L
V
D
F
I
Q
V
HKDDLQDW
L
F
V
L
-
L
T
Q
L
L
K
K
M
G
A
D
L
L
G
S
V
Q
A
K
V
Q
K
A
L
D
I
T
R
E
S
F
P
N
D
L
Q
F
N
I
L
M
R
F
T
V
D
Q
T
Q
T
P
S
L
K
V
K
V
A
I
L
K
Y
I
E
T
L
A
K
Q
M
D
P
R
DFTNS
S
E
-
T
R
L
A
V
S
R
V
I
T
W
T
T
E
P
K
S
S
D
V
R
K
A
A
Q
S
V
L
I
S
L
F
E
L
N
T
P
-
E
F
T
M
L
L
G
A
L
P
K
T
-----
F
Q
D
G
A
T
K
L
L
H
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
58.12
32%
-36
- C5 -
4K5M
-
AMP1_PLAFQ
A:
[779-824]
-------------------------------------------
R
K
D
I
Y
E
I
L
K
K
L
E
N
-
E
V
--
L
K
D
-
S
K
N
-
P
N
---
D
I
R
A
----------
V
Y
L
P
-
F
T
N
N
L
R
R
-
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
K
T
D
K
--------
F
N
P
-
M
V
A
T
Q
L
C
E
P
F
K
L
W
N
K
L
D
T
K
R
Q
E
L
M
L
N
E
M
-
N
T
M
------
L
-
Q
E
P
Q
I
S
N
N
L
K
---
E
Y
L
L
R
L
T
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
57.99
32%
-39
- C5 -
3EBI
2
AMP1_PLAFQ
A:
[778-823]
-------------------------------------------
R
K
D
I
Y
E
I
L
K
K
L
E
N
-
E
V
--
L
K
D
-
S
K
N
-
P
N
---
D
I
R
A
----------
V
Y
L
P
-
F
T
N
N
L
R
R
-
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
K
T
D
K
--------
F
N
P
-
M
V
A
T
Q
L
C
E
P
F
K
L
W
N
K
L
D
T
K
R
Q
E
L
M
L
N
E
M
-
N
T
M
------
L
-
Q
E
P
Q
I
S
N
N
L
K
---
E
Y
L
L
R
L
T
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
57.34
32%
-40
- C5 -
3EBH
1
AMP1_PLAFQ
A:
[777-822]
-------------------------------------------
R
K
D
I
Y
E
I
L
K
K
L
E
N
-
E
V
--
L
K
D
-
S
K
N
-
P
N
---
D
I
R
A
----------
V
Y
L
P
-
F
T
N
N
L
R
R
-
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
K
T
D
K
--------
F
N
P
-
M
V
A
T
Q
L
C
E
P
F
K
L
W
N
K
L
D
T
K
R
Q
E
L
M
L
N
E
M
-
N
T
M
------
L
-
Q
E
P
Q
I
S
N
N
L
K
---
E
Y
L
L
R
L
T
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
57.31
32%
-36
- C5 -
4R5X
1
AMP1_PLAFQ
A:
[791-836]
-------------------------------------------
R
K
D
I
Y
E
I
L
K
K
L
E
N
-
E
V
--
L
K
D
-
S
K
N
-
P
N
---
D
I
R
A
----------
V
Y
L
P
-
F
T
N
N
L
R
R
-
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
K
T
D
K
--------
F
N
P
-
M
V
A
T
Q
L
C
E
P
F
K
L
W
N
K
L
D
T
K
R
Q
E
L
M
L
N
E
M
-
N
T
M
------
L
-
Q
E
P
Q
I
S
N
N
L
K
---
E
Y
L
L
R
L
T
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
57.20
32%
-35
- C5 -
4J3B
-
AMP1_PLAFQ
A:
[776-821]
-------------------------------------------
R
K
D
I
Y
E
I
L
K
K
L
E
N
-
E
V
--
L
K
D
-
S
K
N
-
P
N
---
D
I
R
A
----------
V
Y
L
P
-
F
T
N
N
L
R
R
-
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
K
T
D
K
--------
F
N
P
-
M
V
A
T
Q
L
C
E
P
F
K
L
W
N
K
L
D
T
K
R
Q
E
L
M
L
N
E
M
-
N
T
M
------
L
-
Q
E
P
N
I
S
N
N
L
K
---
E
Y
L
L
R
L
T
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
57.10
32%
-34
- C5 -
4K5L
-
AMP1_PLAFQ
A:
[779-824]
-------------------------------------------
R
K
D
I
Y
E
I
L
K
K
L
E
N
-
E
V
--
L
K
D
-
S
K
N
-
P
N
---
D
I
R
A
----------
V
Y
L
P
-
F
T
N
N
L
R
R
-
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
K
T
D
K
--------
F
N
P
-
M
V
A
T
Q
L
C
E
P
F
K
L
W
N
K
L
D
T
K
R
Q
E
L
M
L
N
E
M
-
N
T
M
------
L
-
Q
E
P
Q
I
S
N
N
L
K
---
E
Y
L
L
R
L
T
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
56.81
32%
-35
- C5 -
4R5V
1
AMP1_PLAFQ
A:
[783-828]
-------------------------------------------
R
K
D
I
Y
E
I
L
K
K
L
E
N
-
E
V
--
L
K
D
-
S
K
N
-
P
N
---
D
I
R
A
----------
V
Y
L
P
-
F
T
N
N
L
R
R
-
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
K
T
D
K
--------
F
N
P
-
M
V
A
T
Q
L
C
E
P
F
K
L
W
N
K
L
D
T
K
R
Q
E
L
M
L
N
E
M
-
N
T
M
------
L
-
Q
E
P
Q
I
S
N
N
L
K
---
E
Y
L
L
R
L
T
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
56.48
32%
-38
- C5 -
3T8V
-
AMP1_PLAFQ
A:
[777-822]
-------------------------------------------
R
K
D
I
Y
E
I
L
K
K
L
E
N
-
E
V
--
L
K
D
-
S
K
N
-
P
N
---
D
I
R
A
----------
V
Y
L
P
-
F
T
N
N
L
R
R
-
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
K
T
D
K
--------
F
N
P
-
M
V
A
T
Q
L
C
E
P
F
K
L
W
N
K
L
D
T
K
R
Q
E
L
M
L
N
E
M
-
N
T
M
------
L
-
Q
E
P
Q
I
S
N
N
L
K
---
E
Y
L
L
R
L
T
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
55.89
32%
-33
- C5 -
4K5N
1
AMP1_PLAFQ
A:
[777-822]
-------------------------------------------
R
K
D
I
Y
E
I
L
K
K
L
E
N
-
E
V
--
L
K
D
-
S
K
N
-
P
N
---
D
I
R
A
----------
V
Y
L
P
-
F
T
N
N
L
R
R
-
F
H
D
I
S
G
K
G
Y
K
L
I
A
E
V
I
T
K
T
D
K
--------
F
N
P
-
M
V
A
T
Q
L
C
E
P
F
K
L
W
N
K
L
D
T
K
R
Q
E
L
M
L
N
E
M
-
N
T
M
------
L
-
Q
E
P
Q
I
S
N
N
L
K
---
E
Y
L
L
R
L
T
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------