@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0188: (2015-12-25 )
MIAQFVAVVLPILICTGIGFAWSRSAGPVDTRALVFLVANVGFPCLLLSSLDRPGLSIGMVAGVFLATALAVLAFALLGLVALRLLRMPVRRYLPSIMLPNSGNMGIPIAYLAFGEEALVYAVAFSTLIQVGHATLGVWFASGDITPASILRNPMIYALAVALGLIALGWSLPPPLRDVTRLLGGITVPLMLVMLGLSLAGLRLHETWRPLLLSLVRVWGGFAVGYGIAAGLGMAAVAAGTFAIQCGMPTAVLTYLLAKRYDGPVNEVAGMVLITTLLVLLSTPLFIQLLPRA
Atome Classification :
(20 SA)
---------------------------------------------------.........10........20.....-...30........40........-50-----........60-.........70........80....---....90........100...-......-----110.------...---...-120----.....-------..130-....----...140-....------....150----..-----..------.....160.......170......-.180..-..---------------------...190.--.-......------200...--.-...210........220.......230--...---...--..240.-.....----.250.......260..----......270.......280.......290.---------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------M
I
A
Q
F
V
A
V
V
L
P
I
L
I
CTGIGFAWSRSA-GPV
D
T
R
A
L
V
F
L
V
A
NVG
F
P
C
L
L
L
S
-SL-----DRPG
L
S
I
G
M
--
V
A
G
V
F
L
A
T
A
L
A
V
L
A
F
A
L
L
G
L
V
A
L
R
L
---
L
R
M
P
V
R
R
YL
P
S
IMLP--NSG-NMG
I
P
I
-----
A
Y
L
A------FGE---
E
A
L
-
V
Y
A
----
V
A
F
S
T
-------
L
I
Q
VG-H
A
T
L
----
G
V
W
F
A--SGDI------
T
P
A
S
I
------
L
R-----N
P
------
M
I
Y
A
L
A
V
A
L
G
L
I
A
LGWSLPP
P
L
R
D
-
V
T
R
L
LG-
G
I
---------------------
T
V
P
L
M
-
L
--
V
-
M
L
G
L
S
L
------AG
L
R
L
H
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-
T
W
R
P
-
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L
L
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V
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F
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G
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A
A
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---
L
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M
---
A
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V
--AA
G
T
F
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-
I
QCGM----
P
T
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L
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Y
L
L
A
K
RY-DG----
P
V
N
E
V
A
G
M
V
L
I
T
T
L
L
V
L
LST
P
L
F
I
Q
LLPRA---------
12
Fugue
86.85
15%
-146
- C3 -
3ZUY
10
?
A:
[2-309]
-----------------------------------------------N
I
L
S
K
I
S
S
F
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K
T
F
S
L
W
A
A
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---
L
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G
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-----
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N
---
V
A
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----
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----
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A
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M
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-----
K
M
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K
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K
T
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D
-
A
L
P
L
V
S
-
V
A
---------------------
A
I
V
L
I
-
I
--
G
-
A
V
V
G
A
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------
K
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K
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L
L
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V
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---
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----
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A
----
A
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S
V
W
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N
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S
L
L
A
T
Y
W
A
A
K
A--------
14
Fugue
85.97
22%
-143
* C3 *
4BWZ
2
?
A:
[3-386]
G
A
E
H
L
L
E
I
F
Y
L
L
L
A
A
Q
V
C
A
F
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R
L
NQP
V
V
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G
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L
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GPALLGLVHEG
E
I
L
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L
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L
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V
A
L
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F
L
G
-
G
Y
-----
L
Y
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G
L
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L
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L
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---
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----
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-------
L
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----
G
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F
--
L
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T
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------
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A
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L
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------
L
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RLPVG
S
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------
L
G
F
A
L
A
L
G
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G
M
A
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A
A
S
I
G
L
A
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P
I
-
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G
A
F
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G
M
L
L
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EVREKYRL
E
E
P
I
F
A
I
E
S
F
L
A
P
I
F
-
F
--
A
-
M
V
G
V
R
L
---------
E
L
S
--
A
-
L
A
S
P
-
V
V
L
V
A
G
T
V
V
T
V
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A
I
L
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K
V
L
G
G
---
F
L
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---
A
L
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V
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A
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C
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M
APRG
E
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A
A
L
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L
K
A
-
G
A
----
V
N
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Y
A
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F
M
V
V
F
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T
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F
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P
F
A
L
K
P
L
I
A
W
T
E
R
E
R
A
A
K
E
16
Fugue
80.87
19%
-148
- C3 -
4P4M
5
?
A:
[92-378]
-----------------------------------------------------
K
P
K
L
K
A
I
Q
E
L
T
Q
V
H
G
F
G
---
P
R
A
A
-
A
A
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Y
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---
K
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D
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------
R
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---
D
A
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-
P
L
S
----
E
P
V
A
A
-------
T
G
V
L
G
-
H
F
V
E
------
F
L
E
--
S
L
K
Y
------
L
E
A
T
M
------
A
Q
-----
G
P
------
L
K
Y
M
G
M
G
---------
R
L
P
P
R
I
N
---
T
K
V
Y
K
-
A
R
---------------------
R
V
D
I
R
-
L
--
I
E
T
K
S
V
P
T
------
A
M
L
T
F
T
GS
K
-
N
F
N
V
-
I
M
R
Q
A
A
I
S
K
G
Y
L
L
N
E
Y
G
L
F
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----
L
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T
---
P
E
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--
A
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G
K
N
A
G
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G
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----
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---
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K
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-
E
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----
R
--------
S
E
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D
V
F
D
V
L
G
M
P
-
Y
A
K
P
E
N
R
D
P--------
15
Fugue
80.79
20%
-160
* C5 *
4N7R
-
GLUBP_ARATH
C:
[48-299]
-------------------------------------------------ST
H
K
P
F
P
A
E
V
S
R
S
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M
E
L
S
S
V
G
T
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-----
V
S
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------------
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S
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----
L
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C
G
L
R
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---
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Q
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T
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D
--
T
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L
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A
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-----
W
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------
F
G
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Y
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----
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A
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-------
V
L
Q
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F
M
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----
G
I
W
V
A
--
S
S
D
Y
------
K
N
A
S
----------------------------------------
P
D
P
L
R
D
I
A
E
D
I
V
N
-
Q
I
---------------------
N
A
N
N
M
-
E
--
D
-
I
F
R
F
C
N
------
V
Y
V
D
L
--------
D
-
F
V
V
S
E
T
K
M
I
W
M
D
R
L
G
F
D
L
R
V
W
---
S
----------
P
R
G
V
Y
D
-
V
R
I
P
F
----
P
M
E
V
T
D
---
E
K
G
A
-
K
S
----
S
F
N
G
M
S
Q
L
A
W
E
V
E
K
S
Y
C
P
A
D
F
N
K
V
K
L
L
K
Q
V
V--------
20
Fugue
64.74
15%
-123
- C3 -
1F1M
1
?
A:
[3-164]
---------------------------------------------------------------------
P
N
L
T
E
I
S
K
-
K
I
T
E
S
N
A
V
V
L
A
V
K
E
V
E
T
L
L
T
S
I
D
-
E
L
A
K
A
IG
K
K
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--
D
N
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A
D
H
N
G
S
L
M
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G
A
Y
L
I
S
T
L
I
T
K
K
I
---
S
A
-----------
I
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--
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G
-
E
L
-----------
K
A
------
E
I
E
---
K
A
K
-
K
C
S
----
E
E
F
T
A
-------
K
L
K
G
E
-
H
T
D
L
----
G
K
E
G
V
--
T
D
D
N
------
A
K
K
A
I
------
L
K
-----
T
N
NDKTKG
A
D
E
L
E
K
L
F
E
S
V
K
N
L
S
K
A
A
K
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M
L
T
N
-
S
V
K
E
L
T
-
S
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
60.00
29%
-157
- C4 -
4F4H
2
?
A:
[301-411]
---------------------------------------------------------------------------------------------------------------
P
G
A
I
I
G
L
--
S
G
G
V
D
S
A
L
V
L
A
V
-
A
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A
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G
A
E
R
V
R
A
---
V
M
M
P
-
S
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I
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--
D
A
A
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D
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A
R
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-----
G
-
V
R
------
Y
D
E
--------------
I
A
I
A
P
-------
M
F
D
A
F
-
R
A
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----
A
A
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F
A
GL
A
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D
A
------
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N
I
Q
A
R
---
I
R
-----
G
T
------
L
L
M
A
L
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N
K
F
G
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L
T
T
G
N
K
S
E
M
A
V
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G
Y
C
T
L
Y
-
G
D
---------------------
M
A
G
G
F
-
A
--
V
-
I
K
D
I
A
K
------
T
L
V
Y
R
L
--
C
-
R
Y
R
N
-
A
A
A
E
Y
G
Q
P
D
I
V
P
E
R
I
L
T
R
L
P
P
---
Y
D
V
---
L
D
A
--
I
M
R
M
Y
M
-
E
E
D
R
P
----
L
A
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I
V
A
A
G
Y
S
E
A
D
-
V
K
----
R
V
T
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K
I
N
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Y
K
R
R
Q
A
P
V
G
I
R
V
T
H
R
A
F
G
R
D
---------
18
Fugue
53.35
20%
-117
- C3 -
4P78
-
?
A:
[1-86]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
I
Y
P
----
I
F
I
F
K
-------
T
V
E
G
F
-
D
G
Y
F
PDID
G
C
F
F
A
--
G
N
--------
T
F
A
D
I
------
S
K
-----
N
A
------
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E
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F
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F
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R
Y
I
D
-
D
P
---------------------
R
L
K
E
E
-
G
--
G
-
I
L
G
F
V
E
------
I
D
P
--------------------------------------------------------------------------------------------------------------------------
17
Fugue
49.14
18%
-90
- C3 -
1CPO
14
?
?:
[123-299]
----------------------------------------------------------------------------------------------------
N
-
S
N
-----
D
F
I
D
-
N
R
N
F
--
D
A
E
T
F
Q
T
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D
V
V
A
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T
H
F
D
Y
A
D
M
N
E
---
I
R
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Q
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L
S
N
E
L
D
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--
G
W
F
-
T
E
S
K
P
I
-----
Q
N
V
E
------
S
G
F
---
I
F
A
-
L
V
S
DFNL
P
D
N
D
E
-------
N
P
L
V
R
-
I
D
W
W
----
K
Y
W
F
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--
N
E
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PYHLGW
H
P
P
S
P
------
A
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-----
E
I
------
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F
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A
S
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A
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L
A
A
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V
T
S
T
P
S
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L
P
S
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G
A
I
G
P
G
-
A
E
---------------------
A
V
P
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F
A
S
T
-
M
T
P
F
L
L
------
A
T
N
A
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Y
--
Y
-
A
Q
D
P
-
T
L
G
P
N
D
--------------------------------------------------------------------------------------------------------
21
Fugue
46.21
22%
-120
- C5 -
2E6Q
-
A:
[1-112]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
S
S
G
-
S
S
G
T
A
R
-----
L
V
A
G
L
E
D
V
Q
V
Y
D
G
---
E
D
A
-
V
F
S
----
L
D
L
S
T
-------
I
I
Q
-----------
G
T
W
F
L
--
N
G
E
E
------
L
K
S
N
E
------
P
E
-----
G
Q
------
V
E
P
G
--------
A
L
R
Y
R
I
E
Q
K
G
L
Q
-
H
R
L
I
L
H
-
A
V
---------------------
K
H
Q
D
S
-
G
--
A
-
L
V
G
F
S
C
PG
V
Q
D
S
A
A
L
T
I
Q
--
E
-
S
S
G
P
-
S
S
G
-----------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
42.97
25%
-96
- C4 -
1DQ3
-
NDRZ_PYRFU
A:
[312-392]
-------------------------------------------------------------------------------------------------------------------------------------------
L
I
G
K
N
L
---
Q
N
E
E
K
R
E
K
L
E
K
V
L
S
N
--
H
K
G
G
N
F
G
L
P
L
-----
N
F
N
A
------
F
K
E
---
W
A
S
-
E
Y
G
----
V
E
F
K
T
NGS
Q
T
I
A
I
I
N
D
E
-
R
I
S
L
----
G
Q
W
H
T
--
R
N
R
V
------
S
K
A
V
L
------
V
K
-----
M
L
------
R
K
L
Y
E
A
T
K
D
E
E
V
K
R
M
L
H
L
I
E
G
L
E
V
-
V
R
H
I
T
T
-
T
N
---------------------
E
P
R
T
F
-
Y
--
D
-
L
T
V
E
N
Y
------
Q
N
Y
L
A
G
--
E
-
N
G
M
I
-
F
V
H
N
----------------------------------------------------------------------------------------------------------
4
HHSearch
40.64
14%
-105
- C4 -
1ZCD
-
NHAA_ECOLI
A:
[250-381]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
E
H
-
V
L
H
P
W
V
A
Y
L
---------------------
I
L
P
L
F
A
F
--
A
-
N
A
G
V
S
L
------
Q
G
V
T
L
D
--
G
L
T
S
I
L
P
L
G
I
I
A
G
L
L
I
G
K
P
L
G
I
S
L
F
C
W
L
ALR
L
K
L
AHL
P
E
G
T-
T
Y
Q
Q
I
M
-
V
V
G
I
L
C
G--
I
G
F
T
M
S
I
F
I
A
S
L
A
F
G
S
VDPE
L
I
N
W
A
K
L
G
I
L
V
G
S
I
S
S
A
V
I
G
Y
S
W
L
R
V
R
L
-----------
6
HHSearch
31.93
23%
42
- C4 -
1V54
-
CX6A2_BOVIN
G:
[11-36]
--------------------------------------------------------------------------------
T
G
A
R
T
W
R
F
L
T
F
G
L
A
L
P
S
V
A
L
C
-
T
L
-----
N
S
W
L
H
S
G
H
R
--
E
R
P
A
F
I
P
Y
H
H
L
R
I
R
T
K
P
F
S
W
G
D
G
N
H
---
T
F
F
H
N
P
R
V
N
P
L
P
T
G
Y
--
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
27.45
24%
71
- C4 -
2Y69
-
CX6A2_BOVIN
G:
[24-48]
---------------------------------------------------------------------------------
G
A
R
T
W
R
F
L
T
F
G
L
A
L
P
S
V
A
L
C
-
T
L
-----
N
S
W
L
H
S
G
H
R
--
E
R
P
A
F
I
P
Y
H
H
L
R
I
R
T
K
P
F
S
W
G
D
G
N
H
---
T
F
F
H
N
P
R
V
N
P
L
P
T
G
Y
--
E
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
23.82
30%
59
- C3 -
1VF5
1
PETM_MASLA
F:
[1-33]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
-----
E
E
------
M
L
Y
A
A
L
L
S
F
G
L
I
F
V
G
W
G
L
G
V
L
L
L
K
-
I
Q
G
A
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
23.20
9%
-2
- C4 -
3UC2
4
?
A:
[28-60]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
V
-
H
Y
N
V
F
----
N
S
S
F
L
Q
P
N
V
A
S
A
V
-
G
L
----
V
R
S
K
A
Q
G
V
I
N
V
V
P
M
E
K
G
K
P
V
E
A
A
V
T
G
S
A
K
D
---------
11
HHSearch
15.63
13%
306
* C4 *
2L01
-
?
A:
[40-54]
--------------------------------------------------------------
K
D
F
F
L
G
L
G
W
L
L
R
E
D
K
-
V
V
T
S
E
V
E
G
E
I
F
V
K
L
V
L
E
H
H
H
H
H
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
14.88
18%
99
- C4 -
2LX0
-
?
A:
[7-28]
------------------------------------------------------
E
V
I
A
G
L
V
A
L
L
T
F
L
A
F
G
F
W
L
F
K
Y
L
-
Q
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
12.19
56%
529
- C1 -
1G92
-
POTX_PARCV
A:
[2-10]
----------------------------------------------------------------------------------------------
L
P
L
L
I
L
G
-
S
L
-----
L
M
T
P
P
V
I
Q
A
--
I
H
D
A
Q
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
7.03
25%
515
- C4 -
2J5D
-
BNIP3_HUMAN
A:
[175-186]
----------------------------------------------------------------
L
A
I
G
L
G
I
Y
I
G
R
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
6.99
14%
318
- C2 -
1Y4E
-
SL9A1_HUMAN
A:
[160-173]
----------------------------------------------------------------------------------------
V
F
F
L
F
L
L
P
P
I
I
L
D
-
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------