@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0197: (2015-12-25 )
MATPQPVDARTQPWRETPGGDLVALGRPVRQALHLVRHNPAQGRVLSRRETILLVLFALTLHGAVIHWLSQQRTPALPEVPPQVPPMTIEFTAPAPPVVEPPPPEPLPPVVEEPPPPVVDENAVKPPPPKPVPKPKPKPKPQPRPKPAPKAVEPAPPAPPQPAAPPAPPAPAAAPAPLTPPSANAGYLHNPAPEYPALAMRRGWEGTVLLRVHVLASGSPSEIQVQKSSGREALDQAAVKAVKRWSFVPAKRGDKAEDGWVSVPIDFKLN
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10....-....20......-..30........40.......---..50........----60...--.....70........80......-..90.-.......100-.........110-.......120.......130.....-..140---........150.......160-.......170---.........180.....-..190.......200.......210.......220.......--230.......240......---.250....--.-..260........270----
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------MATPQPVDARTQPWR-ETPGG
D
L
V
AL
G
R
-
P
V
R
Q
A
L
H
L
V
RHNP-AQ
G
R
V
LS---RR
E
T
I
L
L
V
L
F
A
L
----
T
L
H
G
A
--
V
I
H
W
L
S
QQRTPALPEVPPQVP
P
M
-
T
I
E
F
T-APAPPVVE---PPPPEPLPPVVE-EPPPPVVDENAVKPPPPKPVPKPKP-KPK-P---QPRPKPAPKAVEPAPPAPPQP-AAPPAPPA-----PAAAPAPLTPPSANAGY-LHNPAPEY
P
A
L
A
M
RRGWE
G
T
V
L
L
R
V
H
V
L
ASGSP
S
E
I
Q
V
QKSS--
G
R
E
A
L
D
Q
A
A
V
K
A
V
K
R
WSFV---PAKRGDKA--E-D
G
W
-
V
S
V
P
I
D
F
KLN------
2
PsiBlast_PDB
69.52
29%
-70
- C5 -
1XX3
-
TONB_ECOLI
A:
[151-233]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
P
R
A
-
L
S
R
N
Q
P
Q
Y
P
A
R
A
Q
A
L
R
I
E
G
Q
V
K
V
K
F
D
V
T
P
D
G
R
V
D
N
V
Q
I
L
S
A
K
--
P
A
N
M
F
E
R
E
V
K
N
A
M
R
R
W
R
Y
E
---
P
G
K
P
G
S
--------
G
-
I
V
V
N
I
L
F
K
I
N
------
1
PsiBlast_PDB
69.08
30%
-60
- C5 -
2K9K
-
?
A:
[122-204]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
R
V
E
P
V
Y
P
S
R
A
L
K
R
G
V
E
G
F
V
T
L
S
F
T
I
D
T
T
G
K
A
V
D
I
N
V
V
D
A
N
--
P
K
R
M
F
E
R
E
A
M
Q
A
L
K
K
W
K
Y
Q
---
P
Q
I
V
D
G
K
A
I-
E
-
Q
P
G
-
Q
T
V
T
V
E
F
K
I
-------
20
HHSearch
64.17
29%
-56
- C5 -
2K9K
-
?
A:
[125-205]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
P
V
Y
P
S
R
A
L
K
R
G
V
E
G
F
V
T
L
S
F
T
I
D
T
T
G
K
A
V
D
I
N
V
V
D
A
N
--
P
K
R
M
F
E
R
E
A
M
Q
A
L
K
K
W
K
Y
Q
---
P
Q
I
V
D
G
K
A
--
I
-
E
Q
P
G
Q
T
V
T
V
E
F
K
I
A
------
41
Fugue
64.03
19%
1
- C3 -
4C8H
-
CTF4_YEAST
A:
[25-476]
FRYMPFSPAGTPFGFTDRRYLTMNEV
G
Y
V
S
T
V
K
N
SE
Q
Y
S
I
T
V
S
F
FDVGR
F
R
E
Y
H
F
E
D
LFGYD
L
C
F
L
N
EK
G
T
L
F
G
Q
SKTG
Q
I
Q
Y
R
P
HDSI
H
S
N
W
T
K
I
I
PLQAGERIT
S
V
A
A
T
PV
R
V
I
V
G
T
SLG
Y
F
R
S
F
N
QFGVPF
A
V
E
K
T
SPIV
A
L
T
A
Q
NY
R
V
F
S
V
H
Y
S
QFH
G
L
S
Y
S
L
S
E
L
K
R
Y
Y
K
R
E
C
P
L
P
M
S
L
P
N
I
N
----
S
D
M
K
K
D
A
N
L
D
Y
Y
N
F
N
P
M
G
-------------
I
K
S
L
F
F
S
S
YG
D
P
C
I
F
G
S
DN
T
L
L
L
L
S
K
W
R
S
P
E
E
S
K
W
L
P
I
L
D
S
N
M
E
I
-
W
K
M
S
G
G
K
---
E
---
T
T
D
I
H
V
W
P
L
A
L
A
-
Y
D
T
L
N
C
I
L
V
K
G
K
H
I
W
P
E
F
P
L
P
L
P
S
E
M
E
I
R
M
P
VFV
K
S
K
L
L
E
E
N
K
A
I
L
N
K
E
I
Q
I
P
V
S
M
A
A
E
E
E
Y
L
R
-----
S
K
V
L
S
E
L
L
T
D
T
L
E
N
D
G
E
M
Y
G
N
---
E
N
E
V
L
A
A
L
N
G
A
Y
D
K
A
L
L
R
L
F
A
S
A
C
--------
S
D
Q
N
--
V
E
K
A
L
S
L
A
H
E
L
K
Q
D
R
A
L
T
A
---
A
V
K
I
S
E
R
A
--
E
-
L
P
S
-
L
V
K
K
I
N
N
I
R
E
A
R
Y
E
Q
Q
4
PsiBlast_PDB
62.97
27%
-63
- C5 -
1U07
-
TONB_ECOLI
A:
[156-233]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
R
N
Q
P
Q
Y
P
A
R
A
Q
A
L
R
I
E
G
Q
V
K
V
K
F
D
V
T
P
D
G
R
V
D
N
V
Q
I
L
S
A
K
--
P
A
N
M
F
E
R
E
V
K
N
A
M
R
R
W
R
Y
E
---
P
G
K
P
G
S
G
---------
I
V
V
N
I
L
F
K
I
N
------
21
HHSearch
62.44
28%
-67
- C5 -
1U07
-
TONB_ECOLI
A:
[154-232]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
-
L
S
R
N
Q
P
Q
Y
P
A
R
A
Q
A
L
R
I
E
G
Q
V
K
V
K
F
D
V
T
P
D
G
R
V
D
N
V
Q
I
L
S
A
K
--
P
A
N
M
F
E
R
E
V
K
N
A
M
R
R
W
R
Y
E
---
P
G
K
P
G
S
G
---------
I
V
V
N
I
L
F
K
I
-------
24
HHSearch
61.56
25%
-47
- C5 -
1TOL
-
A:
[143-213]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
F
Y
D
A
S
S
Y
--
A
G
--
K
T
C
T
L
R
I
K
L
A
P
D
G
M
L
L
D
I
--
K
P
E
G
--
G
D
P
A
L
C
Q
A
A
L
A
A
A
-
K
L
A
K
I
---
P
K
P
P
S
Q
A
V
--
Y
-
E
V
F
-
K
N
A
P
L
D
F
K
P
A
------
3
PsiBlast_PDB
60.40
27%
-57
- C5 -
2GSK
-
B:
[4-81]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
R
N
Q
P
Q
Y
P
A
R
A
Q
A
L
R
I
E
G
Q
V
K
V
K
F
D
V
T
P
D
G
R
V
D
N
V
Q
I
L
S
A
K
--
P
A
N
M
F
E
R
E
V
K
N
A
M
R
R
W
R
Y
E
---
P
G
K
P
G
S
G
---------
I
V
V
N
I
L
F
K
I
N
------
19
HHSearch
59.53
28%
-64
- C5 -
2GRX
-
TONB_ECOLI
C:
[148-223]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
N
Q
P
Q
Y
P
A
R
A
Q
A
L
R
I
E
G
Q
V
K
V
K
F
D
V
T
P
D
G
R
V
D
N
V
Q
I
L
S
A
K
--
P
A
N
M
F
E
R
E
V
K
N
A
M
R
R
W
R
Y
E
---
P
G
K
P
G
S
--------
G
-
I
V
V
N
I
L
F
K
I
N
------
22
HHSearch
57.96
24%
-52
- C5 -
1LR0
1
A:
[41-118]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
W
R
R
P
P
S
A
---
R
N
G
M
S
V
E
V
L
I
E
M
L
P
D
G
T
I
T
N
A
S
V
S
R
S
S
--
G
D
K
P
F
D
S
S
A
V
A
A
V
R
N
V
G
R
I
---
P
E
M
Q
Q
L
P
R
A
T
F
D
S
L
Y
-
R
Q
R
R
I
I
F
K
P
E
------
35
Fugue
52.70
27%
-81
- C5 -
1IHR
2
TONB_ECOLI
A:
[2-74]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
A
Q
A
L
R
I
E
G
Q
V
K
V
K
F
D
V
T
P
D
G
R
V
D
N
V
Q
I
L
S
A
K
--
P
A
N
M
F
E
R
E
V
K
N
A
M
R
R
W
R
Y
E
---
P
G
K
P
G
S
G
---------
I
V
V
N
I
L
F
K
I
N
G
T
T
E--
8
PsiBlast_PDB
51.27
26%
-82
- C5 -
1IHR
2
TONB_ECOLI
A:
[2-70]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
A
Q
A
L
R
I
E
G
Q
V
K
V
K
F
D
V
T
P
D
G
R
V
D
N
V
Q
I
L
S
A
K
--
P
A
N
M
F
E
R
E
V
K
N
A
M
R
R
W
R
Y
E
---
P
G
K
P
G
S
G
---------
I
V
V
N
I
L
F
K
I
N
------
16
PsiBlast_PDB
50.79
34%
-87
- C1 -
1OQY
-
RD23A_HUMAN
A:
[89-134]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
---
E
A
S
P
T
A
A
P
E
S
S
T
S
F
P
P
A
P
T
S
G
-
M
S
H
P
P
P
A
A
REDKS
P
S
E
E
S
A
P
T
T
S
P
E
S
V
S
G
S
-
V
P
S
S
G
S
S
G
R
E
E
D
A
A
S
T
L
V
T
G
S
E
Y
E
T
M
L
T
E
I
M
S
M
G
Y
E
R
E
R
V
V
A
--
A
L
R
A
S
Y
N
N
P
H
R
A
V
E
Y
L
L
T
G
---
I
P
G
S
P
E
P
E
--
H
-
G
S
V
-
Q
E
S
Q
V
S
E
Q
P
A
------
7
PsiBlast_PDB
48.34
30%
-41
- C5 -
2GRX
-
TONB_ECOLI
C:
[148-211]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
N
Q
P
Q
Y
P
A
R
A
Q
A
L
R
I
E
G
Q
V
K
V
K
F
D
V
T
P
D
G
R
V
D
N
V
Q
I
L
S
A
K
--
P
A
N
M
F
E
R
E
V
K
N
A
M
R
R
W
R
Y
E
---
P
G
K
P
G
S
G
I
--
V
-
V
N
I
-
L
F
K
I
N
G
T
---------
37
Fugue
48.21
14%
-33
- C4 -
4OA5
19
?
A:
[16-227]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
Q
D
E
Y
L
N
K
L
F
-
A
V
D
T
E
G
A
L
K
A
H
K
-
T
A
P
S
E
L
R
M
A
Q
L
G
T
-
V
E
G
Q
M
L
Q
L
L
I
R
M
A
G
I
H
S
I
V
E
V
G
----
T
C
V
G
F
--
S
A
I
C
M
A
H
A
-------
L
P
S
K
G
H
I
Y
-
T
I
E
K
D
-------------------------
Y
E
N
V
V
T
A
N
Q
N
I
V
N
C
K
L
E
D
K
I
T
V
L
H
G
-
E
-----------------------------
A
L
A
Q
L
N
T
L
-----
K
E
M
A
P
F
D
M
I
F
I
D
A
N
-----
K
S
S
Y
L
A
Y
L
N
W
A
K
M
Y
I
R
K
G
G
L
I
V
A
D
N
T
F
L
F
G
-----
S
V
F
D
E
H
--
P
T
E
K
V
S
S
N
A
H
A
S
M
R
A
F
N
D
E
L
A
N
K
E
K
Y
L
S
T
I
--
I
-
P
T
S
-
E
G
M
M
V
S
I
K
L
T
------
9
PsiBlast_PDB
47.94
26%
-73
- C5 -
1QXX
-
TONB_ECOLI
A:
[164-233]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
R
A
Q
A
L
R
I
E
G
Q
V
K
V
K
F
D
V
T
P
D
G
R
V
D
N
V
Q
I
L
S
A
K
--
P
A
N
M
F
E
R
E
V
K
N
A
M
R
R
W
R
Y
E
---
P
G
K
P
G
S
G
---------
I
V
V
N
I
L
F
K
I
N
------
6
PsiBlast_PDB
37.57
36%
5
* C7 *
3IOX
1
?
A:
[439-487]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
V
N
V
P
K
V
T
K
E
K
P
T
P
-
P
V
K
P
T
-
A
P
T
K
P
T
Y
E
T
E
K
P
L
K
P
A
P
V
A
P
N
Y
E
K
E
P
T
P
P
T
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
35.87
19%
-49
- C5 -
3F42
3
Y035_HELPY
A:
[39-76]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
S
V
S
F
N
G
L
G
E
L
V
D
L
Q
I
D
D
S
L
LE
D
K
E
A
M
Q
I
Y
L
M
S
A
L
N
D
G
Y
K
A
---
V
E
E
N
R
K
N
L
--
A
-
F
N
M
-
L
G
--------------
5
PsiBlast_PDB
35.07
36%
37
- C7 -
3IPK
1
?
A:
[439-487]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
V
N
V
P
K
V
T
K
E
K
P
T
P
-
P
V
K
P
T
-
A
P
T
K
P
T
Y
E
T
E
K
P
L
K
P
A
P
V
A
P
N
Y
E
K
E
P
T
P
P
T
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
34.54
36%
5
- C2 -
4XD9
-
?
B:
[20-54]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
L
P
I
T
V
S
-
K
P
T
P
Y
T
F
D
L
G
H
L
L
A
N
D
P
N
P
L
E
L
P
K
S
-
E
P
L
-
N
---
A
S
L
K
A
T
A
R
D
G
V
Q
S
L
L
N
Q
L
L
T
T
-
C
P
I
T
S
S
Q
Q
-----
G
V
L
L
T
L
P
A
P
S
T
I
L
P
R
H
K
-
P
L
P
T
P
---------------------------------------------------------------------------------------------