@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0239: (2015-12-27 )
MNASTSPLPASDQTLRGILLICAAVFLFASHDGLSKFLSGFYPIVMVVWARYLVHTLLMVAVFVPRNGLAVIRSRRPLMQLARALCLIGTSLFFTTGLRYLPLAEATAVNFLAPLLVTALSVPLLKEKVSLGQWLAVLTGFIGVLFIVRPGGALFTPAALFPLGSALCFGLYQLLTRMLANSDSPTTSNFLAGIFNTLIMSLLVPFFWQTPSLLHGLMMIALGGCGMGGHLLLTQAFRHAPPATLAPFSYGQIIFAGLLGLLVFGHVPDAWALLGILVICASGLVVAWRRGR
Atome Classification :
(13 SA)
--..---.......10........20....--.-...30....-...-------.40..------------------.......50.-.......60....-.--...70.......------.80-..---......90.....---...100...-------------------...-.110...-....120......--.--.130.-......140.-.......150...---------------....---160...-.------..--.---.170......------.180..-----------....-.190.....---------..200-------.-------.....-----.210.......---------220-.-..--..-----..230..--.....240.-....-..250...--------.....260...-..----..----------270.....--..280.......290------..-------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--MN---ASTSPLPASDQTLRGILLICAAV--F-LFASHDGLS-KFL-------SG-FY------------------PIVMVVWARY-LVHTLLMVAVFVP-R--NGLAVIRSRRPL------MQL-AR---ALCLIGTSLFFTT---GLRYLPLAE-------------------ATA-VNFLAPL-LVTALS-VPLLKE--K--VSLGQ-WLAVLTG-FI-GVLFIVRPGGALF---------------TPAA---L-FPLG-S------AL--C---FGLYQLLTRM------LANSDS-----------PTTS-NFLAGIFNT---------LIMSL-------L-------VPFFW-----QTPSLLHGLMM---------IAL-G-GC--GM-----GGHLLLT--QAFRHAPPA-TLAP-FSYG-QII--------FAGLLGLLVFG-HV----PD----------AWALLGIL--VICASGLVVAWRR--------GR-------------------------------------------------------------------
11
Fugue
94.13
22%
-157
* C3 *
4R6Y
2
PHNS_SALTY
A:
[1-317]
--
S
M
---
E
S
V
V
T
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--
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A
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-------
E
G
-
G
G
------------------
G
V
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A
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E
-
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A
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A
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--------------
P
F
------
I
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A
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---
A
E
K
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A
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--
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---
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A
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A
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P
-----------------------
D
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LL
K
--
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D
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A
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---------------
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T
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V
---
M
-
L
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A
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-
H
------
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K
---
D
A
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F
A
Y
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------
Q
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N
N
V
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-----------
P
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GEIY
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M
N
L
-------
A
Q
MERNPN
V
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P
A
N
DK
G
E
R
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A
L
A
I
P
Y
V
---------
I
G
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V
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-
G
A
PQ
S
E
-----
N
G
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--
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RSDVTPSD
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----
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--------
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S-----------------------------------------------------------------
13
Fugue
80.54
23%
-143
* C2 *
4OHC
5
?
A:
[10-230]
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------
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-----------
R
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GA-------
T
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C
-------
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-------
V
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-----
N
----
I
F
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---------
S
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--
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--------
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H
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----
P
A
----------
E
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S
A
-----------------
A
H
--------
G
G
-------------------------------------------------------------------
10
Fugue
77.31
20%
-157
- C2 -
4NTC
1
?
A:
[2-326]
--
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-----
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RNAKTQHMHNVLGWDHRN
P
A
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A
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------
L
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K
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V
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---
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L
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I
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A
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Y
E
E
--
R
GQ
E
T
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G
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A
L
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P
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A
N
-
P
A
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R
A
L
H
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A
R
M
A
L
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---------------
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S
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---
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Y
T
N
G
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E
------
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--
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---
K
E
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A
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PVGASG
L
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F
E
A
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-----------
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I
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D
V
A
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---------
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E
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T
E
-------
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-----
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A
---------
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-
A
L
N
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--
P
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----
E
-
T
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P
----------------------
G
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-
D
C
ATPL
K
A
----------
V
T
P
A
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--
S
L
A
A
G
G
L
V
A
Q
L
Q
A
--------
Q
A
L------------------------------------------------------------------
19
Fugue
73.66
20%
-151
- C2 -
4WW7
7
BUD32_YEAST
A:
[4-257]
-E
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------------------
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----
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------
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-
D
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---
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LPG
G
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N
-------------------
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V
R
D
G
A
R
W
---------------
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---
I
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-
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---
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---------
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----------------------------
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---------------------------------------------------------------------
R
--------
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R
-------------------------------------------------------------------
14
Fugue
67.29
16%
-157
- C2 -
4KNC
-
ALGX_PSEAE
A:
[15-437]
--
G
N
LCP
A
A
A
Y
D
S
R
Y
N
T
K
Y
L
G
F
F
T
H
L
V
Q
A
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DD
W
-
L
F
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D
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D
F
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----
A
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------------------
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L
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A
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P
LFDEKEEHAYYFKGDHHWT
P
H
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-
A
R
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NPQ
I
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------
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GPA
Y
N
F
A
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F
L
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E
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A
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A
V
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GGGFD
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C
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KAVDTG
G
R
Y
V
F
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LRNDSDWAD
Q
Q
F
L
S
L
E
I
E
A
PDMPQG
L
E
V
Q
A
S
I
C
Q
A
A---------------------------
12
Fugue
63.01
18%
-140
- C1 -
4UV2
-
CSGG_ECOLI
A:
[18-257]
A
Q
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---------------------------------------
Y
--
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C
L
------
M
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A
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--------
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F
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-
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L
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-------
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V
-------------------------------------------------------------------
16
Fugue
58.31
17%
-144
- C3 -
1YU0
2
FIBD_BPBPP
A:
[5-380]
VQ
F
R
---
G
G
T
T
A
Q
H
A
T
F
T
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A
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R
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D
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--
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-
T
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-----------
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G
-
G
F
------------------
P
L
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---------
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-------------------
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-
P
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---------------
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G
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N
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------
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------
A
A
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-------------
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G
M
-
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A
F
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---------
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I
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-------
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-------
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T
-----
D
G
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N
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GSASPKKS
T
K
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-
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-
G
D
--
G
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AAYSD
G
A
W
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F
A
--
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H
H
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K
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-
L
P
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F
Q
-
A
L
A
--------
F
G
T
T
E
A
T
S
S
G
G
T
D
V
----
P
T
TGVNGTGATS
A
W
N
I
F
T
S
K
WG
V
V
Q
A
S
G
C
L
W
T
W
G
N
--------
E
F
G
G
V
NGASEYTANTGGR
G
S
V
Y
AQPAAALFGGAWNGTSLSGSRAALWYSGPSFSFAF
F
G
A
R
G
V
C
D
H
L
I
L
3
HHSearch
43.28
25%
-203
- C- -
3B5D
1
EMRE_ECOLI
A:
[36-105]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
I
-
I
C
--
Y
C
-----
A
S
F
W
L
L
A
--
Q
T
L
A
Y
I
P
T
G
-
I
A
Y
A
I
W
S
G
V
-
G
I
V
--------
L
I
S
L
L
S
W
G
F
F
G
-
Q
R
----
L
D
----------
L
P
A
I
I
G
M
M
--
L
I
C
A
G
V
L
I
I
N
L
L
S
-----------------------------------------------------------------------------
4
HHSearch
42.55
19%
-113
- C- -
3B5D
1
EMRE_ECOLI
A:
[29-105]
------------------------------------------------------------------------------------------------------------------
R
L
W
------
P
S
V
-
G
T
---
I
I
C
Y
C
A
S
F
W
L
L
A
Q
---
T
L
A
Y
I
P
T
G
I
-------------------
A
Y
A
I
W
S
G
V
G
I
V
-
L
I
S
L
L
S
-
W
G
F
F
G
Q
--
R
--
L
D
L
P
A
-
I
I
G
M
M
L
I
-
C
A
-
G
V
L
I
I
N
L
L
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
34.82
32%
94
* C4 *
3WU2
-
PSBL_THEVL
L:
[13-34]
--------------
N
R
T
S
L
Y
L
G
L
L
L
I
L
V
L
A
--
L
-
L
F
S
S
Y
F
F
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
17.43
13%
168
- C4 -
2B2H
-
?
A:
[297-312]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
-----------
S
L
D
A
-
W
A
I
H
G
I
G
G
L
---------
W
G
S
V
A
-------
V
-------
G
I
L
A
N
-----
P
E
V
N
G
Y
A
G
L
L
F
---------
G
N
P
-
Q
-
L
L
--
V
S
-----
Q
L
I
A
V
A
S
--
T
T
A
Y
A
F
L
V
T
-
L
I
L
A
-
K
A
V
D
-
A
A
V
--------
G
L
R
V
S
S
Q
E
E
Y
V
-
G
L
----
D
L
----------
S
Q
H
E
E
V
A
Y
--
T
-----------------------------------------------------------------------------------------
7
HHSearch
12.39
29%
429
- C4 -
2HAC
-
CD3Z_HUMAN
A:
[14-27]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
L
T
-
A
L
F
L
R
V
--
K
--
F
S
R
S
A
-
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
6.42
20%
251
- C4 -
3WU2
-
PSBT_THEVL
T:
[17-29]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
F
F
F
A
I
F
F
R
-
E
P
----
P
R
----------
I
T
A
N
L
W
E
R
--
F
C
N
W
V
T
S
T
D
N
R
L
Y
--------
V
G
-------------------------------------------------------------------