@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0409: (2016-01-03 )
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVIIVTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG
Atome Classification :
(21 SA)
.........10........20....-....30........40...-.....50........60........70..-......80...-.....90........100....--...110.......120--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
A
R
I
L
I
VDDSP
T
E
M
Y
K
L
T
A
M
L
E
KHG-
H
Q
V
L
KAENGGDG
V
A
L
ARQE-KP
D
V
V
L
M
D
I
VMPGL
N
G
F
Q
A
T
R
Q
L
TKDAET-SA
I
P
V
I
I
V
TTK-DQ
E
T
D
K
V
W
GKRQG
A
R
D
YLTKPV--
D
E
E
T
L
L
K
T
I
N
A
V
LAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
89.79
35%
-118
- C2 -
2IYN
1
PHOB_ECOLI
C:
[4-120]
--
R
I
L
V
V
E
D
E
A
P
I
R
E
M
V
C
F
V
L
E
Q
N
G
-
F
Q
P
V
E
A
E
D
Y
D
S
A
V
N
Q
L
N
E
P
-
W
P
D
L
I
L
L
D
W
M
L
P
G
G
S
G
I
Q
F
I
K
H
L
K
R
E
S
M
T
-
R
D
I
P
V
V
M
L
T
A
-------------
T
G
A
D
D
Y
I
T
K
P
F
--
S
P
K
E
L
V
A
R
I
K
A
V
M
R
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
PsiBlast_CBE
88.49
36%
-102
- C2 -
2ZWM
3
YYCF_BACSU
B:
[4-117]
--
K
I
L
V
V
D
D
E
K
P
I
A
D
I
L
E
F
N
L
R
K
E
G
-
Y
E
V
H
C
A
H
D
G
N
E
A
V
E
M
V
E
E
L
-
Q
P
D
L
I
L
L
D
I
M
L
P
N
K
D
G
V
E
V
C
R
E
V
R
K
K
Y
D
----
M
P
I
I
M
L
T
A
K
-
D
S
E
I
D
K
V
I
G
L
E
I
G
A
D
D
Y
V
T
K
P
F
--
S
T
R
E
L
L
A
R
V
K
A
N
L
R
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
88.11
36%
-98
- C2 -
2ZWM
3
YYCF_BACSU
A:
[4-117]
--
K
I
L
V
V
D
D
E
K
P
I
A
D
I
L
E
F
N
L
R
K
E
G
-
Y
E
V
H
C
A
H
D
G
N
E
A
V
E
M
V
E
E
L
-
Q
P
D
L
I
L
L
D
I
M
L
P
N
K
D
G
V
E
V
C
R
E
V
R
K
K
Y
D
----
M
P
I
I
M
L
T
A
K
-
D
S
E
I
D
K
V
I
G
L
E
I
G
A
D
D
Y
V
T
K
P
F
--
S
T
R
E
L
L
A
R
V
K
A
N
L
R
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
87.95
37%
-88
- C2 -
1W25
1
PLED_CAUCN
B:
[2-118]
-
A
R
I
L
V
V
D
D
I
E
A
N
V
R
L
L
E
A
K
L
T
A
E
Y
-
Y
E
V
S
T
A
M
D
G
P
T
A
L
A
M
A
A
R
D
-
L
P
D
I
I
L
L
D
V
M
M
P
G
M
D
G
F
T
V
C
R
K
L
K
D
D
P
T
T
-
R
H
I
P
V
V
L
I
T
A
L
-
D
G
R
G
D
R
I
Q
G
L
E
S
G
A
S
D
F
L
T
K
P
I
--
D
D
V
M
L
F
A
R
V
R
S
L
T
R
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
87.94
37%
-87
- C2 -
2V0N
3
PLED_CAUCN
A:
[2-118]
-
A
R
I
L
V
V
D
D
I
E
A
N
V
R
L
L
E
A
K
L
T
A
E
Y
-
Y
E
V
S
T
A
M
D
G
P
T
A
L
A
M
A
A
R
D
-
L
P
D
I
I
L
L
D
V
M
M
P
G
M
D
G
F
T
V
C
R
K
L
K
D
D
P
T
T
-
R
H
I
P
V
V
L
I
T
A
L
-
D
G
R
G
D
R
I
Q
G
L
E
S
G
A
S
D
F
L
T
K
P
I
--
D
D
V
M
L
F
A
R
V
R
S
L
T
R
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
87.92
37%
-85
- C2 -
2WB4
4
PLED_CAUCN
A:
[3-119]
-
A
R
I
L
V
V
D
D
I
E
A
N
V
R
L
L
E
A
K
L
T
A
E
Y
-
Y
E
V
S
T
A
M
D
G
P
T
A
L
A
M
A
A
R
D
-
L
P
D
I
I
L
L
D
V
M
M
P
G
M
D
G
F
T
V
C
R
K
L
K
D
D
P
T
T
-
R
H
I
P
V
V
L
I
T
A
L
-
D
G
R
G
D
R
I
Q
G
L
E
S
G
A
S
D
F
L
T
K
P
I
--
D
D
V
M
L
F
A
R
V
R
S
L
T
R
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
101
Fugue
87.36
34%
-94
- C2 -
1B00
-
PHOB_ECOLI
A:
[2-123]
A
R
R
I
L
V
V
E
D
E
A
P
I
R
E
M
V
C
F
V
L
E
Q
N
G
F
Q
P
-
V
E
A
E
D
Y
D
S
A
V
N
Q
L
N
E
-P
W
P
D
L
I
L
L
D
W
M
L
P
G
G
S
G
I
Q
F
I
K
H
L
K
R
E
S
M
T
R-
D
I
P
V
V
M
L
T
A
R
G-
E
E
E
D
R
V
R
G
L
E
T
G
A
D
D
Y
I
T
K
P
-FS-
P
K
E
L
V
A
R
I
K
A
V
M
R
R
I--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
87.24
37%
-87
- C2 -
2WB4
3
PLED_CAUCN
B:
[3-119]
-
A
R
I
L
V
V
D
D
I
E
A
N
V
R
L
L
E
A
K
L
T
A
E
Y
-
Y
E
V
S
T
A
M
D
G
P
T
A
L
A
M
A
A
R
D
-
L
P
D
I
I
L
L
D
V
M
M
P
G
M
D
G
F
T
V
C
R
K
L
K
D
D
P
T
T
-
R
H
I
P
V
V
L
I
T
A
L
-
D
G
R
G
D
R
I
Q
G
L
E
S
G
A
S
D
F
L
T
K
P
I
--
D
D
V
M
L
F
A
R
V
R
S
L
T
R
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
87.15
33%
-106
- C2 -
1NXX
-
?
A:
[2-116]
-
K
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
-
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
-
Q
P
D
I
I
I
L
D
L
----
I
D
G
L
E
V
A
K
T
I
R
K
---
T
-
S
S
V
P
I
L
M
L
S
A
K
-
D
S
E
F
D
K
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
--
S
N
R
E
L
Q
A
R
V
K
A
L
L
R
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
86.77
35%
-100
- C2 -
1B00
-
PHOB_ECOLI
A:
[4-120]
--
R
I
L
V
V
E
D
E
A
P
I
R
E
M
V
C
F
V
L
E
Q
N
G
-
F
Q
P
V
E
A
E
D
Y
D
S
A
V
N
Q
L
N
E
P
-
W
P
D
L
I
L
L
D
W
M
L
P
G
G
S
G
I
Q
F
I
K
H
L
K
R
E
S
M
T
-
R
D
I
P
V
V
M
L
T
A
R
-
G
E
E
E
D
R
V
R
G
L
E
T
G
A
D
D
Y
I
T
K
P
F
--
S
P
K
E
L
V
A
R
I
K
A
V
M
R
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
86.60
36%
-97
- C2 -
3F6P
-
YYCF_BACSU
A:
[4-117]
--
K
I
L
V
V
D
D
E
K
P
I
A
D
I
L
E
F
N
L
R
K
E
G
-
Y
E
V
H
C
A
H
D
G
N
E
A
V
E
M
V
E
E
L
-
Q
P
D
L
I
L
L
D
I
M
L
P
N
K
D
G
V
E
V
C
R
E
V
R
K
K
Y
D
----
M
P
I
I
M
L
T
A
K
-
D
S
E
I
D
K
V
I
G
L
E
I
G
A
D
D
Y
V
T
K
P
F
--
S
T
R
E
L
L
A
R
V
K
A
N
L
R
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
PsiBlast_CBE
86.56
35%
-99
- C2 -
2IYN
1
PHOB_ECOLI
B:
[4-120]
--
R
I
L
V
V
E
D
E
A
P
I
R
E
M
V
C
F
V
L
E
Q
N
G
-
F
Q
P
V
E
A
E
D
Y
D
S
A
V
N
Q
L
N
E
P
-
W
P
D
L
I
L
L
D
W
M
L
P
G
G
S
G
I
Q
F
I
K
H
L
K
R
E
S
M
T
-
R
D
I
P
V
V
M
L
T
A
R
-
G
E
E
E
D
R
V
R
G
L
E
T
G
A
D
D
Y
I
T
K
P
F
--
S
P
K
E
L
V
A
R
I
K
A
V
M
R
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
86.39
37%
-88
- C2 -
2V0N
3
PLED_CAUCN
B:
[2-118]
-
A
R
I
L
V
V
D
D
I
E
A
N
V
R
L
L
E
A
K
L
T
A
E
Y
-
Y
E
V
S
T
A
M
D
G
P
T
A
L
A
M
A
A
R
D
-
L
P
D
I
I
L
L
D
V
M
M
P
G
M
D
G
F
T
V
C
R
K
L
K
D
D
P
T
T
-
R
H
I
P
V
V
L
I
T
A
L
-
D
G
R
G
D
R
I
Q
G
L
E
S
G
A
S
D
F
L
T
K
P
I
--
D
D
V
M
L
F
A
R
V
R
S
L
T
R
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
86.13
32%
-111
- C2 -
1M5U
-
?
A:
[4-120]
--
K
V
L
I
V
E
D
N
E
L
N
M
K
L
F
H
D
L
L
E
A
Q
G
-
Y
E
T
L
Q
T
R
E
G
L
S
A
L
S
I
A
R
E
N
-
K
P
D
L
I
L
M
D
I
Q
L
P
E
I
S
G
L
E
V
T
K
W
L
K
E
D
D
D
L
-
A
H
I
P
V
V
A
V
T
A
----------
I
R
-
G
G
C
E
A
Y
I
S
K
P
I
--
S
V
V
H
F
L
E
T
I
K
R
L
L
E
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
85.85
33%
-89
- C2 -
1NXS
-
?
A:
[2-116]
-
K
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
-
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
-
Q
P
D
I
I
I
L
D
--
L
P
E
I
D
G
L
E
V
A
K
T
I
R
K
---
T
-
S
S
V
P
I
L
M
L
S
A
K
-
D
S
E
F
D
K
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
--
S
N
R
E
L
Q
A
R
V
K
A
L
L
R
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
109
HHSearch
85.54
38%
-86
- C2 -
1W25
1
PLED_CAUCN
A:
[2-117]
-
A
R
I
L
V
V
D
D
I
E
A
N
V
R
L
L
E
A
K
L
T
A
E
Y
-
Y
E
V
S
T
A
M
D
G
P
T
A
L
A
M
A
A
R
D
-
L
P
D
I
I
L
L
D
V
M
M
P
G
M
D
G
F
T
V
C
R
K
L
K
D
D
P
T
T
-
R
H
I
P
V
V
L
I
T
A
L
-
D
G
R
G
D
R
I
Q
G
L
E
S
G
A
S
D
F
L
T
K
P
I
--
D
D
V
M
L
F
A
R
V
R
S
L
T
R
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
85.50
37%
-89
- C2 -
1W25
1
PLED_CAUCN
A:
[2-118]
-
A
R
I
L
V
V
D
D
I
E
A
N
V
R
L
L
E
A
K
L
T
A
E
Y
-
Y
E
V
S
T
A
M
D
G
P
T
A
L
A
M
A
A
R
D
-
L
P
D
I
I
L
L
D
V
M
M
P
G
M
D
G
F
T
V
C
R
K
L
K
D
D
P
T
T
-
R
H
I
P
V
V
L
I
T
A
L
-
D
G
R
G
D
R
I
Q
G
L
E
S
G
A
S
D
F
L
T
K
P
I
--
D
D
V
M
L
F
A
R
V
R
S
L
T
R
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
102
Fugue
85.15
36%
-91
- C2 -
1W25
4
PLED_CAUCN
A:
[1-454]
S
A
R
I
L
V
V
D
D
I
E
A
N
V
R
L
L
E
A
K
L
T
A
E
Y
-
Y
E
V
S
T
A
M
D
G
P
T
A
L
A
M
A
A
R
D
-
L
P
D
I
I
L
L
D
V
M
M
P
G
M
D
G
F
T
V
C
R
K
L
K
D
D
P
T
T
-
R
H
I
P
V
V
L
I
T
A
L
-
D
G
R
G
D
R
I
Q
G
L
E
S
G
A
S
D
F
L
T
K
P
I
--
D
D
V
M
L
F
A
R
V
R
S
L
T
R
F
K
L
V
I
D
E
L
R
Q
R
E
A
S
GRRMGVIAGAAARLDG
L
G
G
R
V
L
I
V
D
DN
E
R
Q
A
Q
R
V
A
A
E
L
GVE
H
R
P
V
I
E
SD
P
E
K
A
K
I
S
A
G
GPVD
L
V
I
V
N
AAAKNFD
G
L
R
F
T
A
A
L
R
S
E
ERTRQ
L
P
V
L
A
M
V
D
PDD
R
G
R
M
V
K
A
L
E
I
GVN
D
I
L
S
R
PID
P
Q
E
L
S
A
R
V
K
T
Q
I
Q
R
K
R
Y
T
D
Y
L
R
N
NLDHSLELAVTDQLTGLHN
R
R
Y
M
T
G
Q
L
D
S
L
V
K
R
A
T
L
G
G
D
P
V
S
A
L
L
I
D
I
D
F
F
K
K
I
N
D
TFG
H
D
I
G
D
E
V
L
R
E
F
A
L
R
L
A
S
N
V
RAI
D
L
P
C
RYGGE
E
F
V
V
I
M
P
DTA
L
A
D
A
L
R
I
A
E
R
I
R
M
H
V
S
G
S
P
F
T
V
AHGR
E
M
L
N
V
T
I
S
I
G
V
S
A
T
A
G
EGDT
P
E
A
L
L
K
R
A
D
E
G
V
Y
Q
A
K
A
S
GRN
A
V
V
G
K
A
AH
7
PsiBlast_PDB
84.78
35%
-112
- C2 -
2IYN
1
PHOB_ECOLI
A:
[4-120]
--
R
I
L
V
V
E
D
E
A
P
I
R
E
M
V
C
F
V
L
E
Q
N
G
-
F
Q
P
V
E
A
E
D
Y
D
S
A
V
N
Q
L
N
E
P
-
W
P
D
L
I
L
L
D
W
M
L
P
G
G
S
G
I
Q
F
I
K
H
L
K
R
E
S
M
T
-
R
D
I
P
V
V
M
L
T
A
R
-
G
---------
E
T
G
A
D
D
Y
I
T
K
P
F
--
S
P
K
E
L
V
A
R
I
K
A
V
M
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
PsiBlast_CBE
84.45
35%
-93
- C2 -
1ZES
2
PHOB_ECOLI
C:
[4-120]
--
R
I
L
V
V
E
D
E
A
P
I
R
E
M
V
C
F
V
L
E
Q
N
G
-
F
Q
P
V
E
A
E
D
Y
D
S
A
V
N
Q
L
N
E
P
-
W
P
D
L
I
L
L
D
W
M
L
P
G
G
S
G
I
Q
F
I
K
H
L
K
R
E
S
M
T
-
R
D
I
P
V
V
M
L
T
A
R
-
G
E
E
E
D
R
V
R
G
L
E
T
G
A
D
D
Y
I
T
K
P
F
--
S
P
K
E
L
V
A
R
I
K
A
V
M
R
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
118
HHSearch
68.20
30%
-74
- C2 -
3C3M
2
?
A:
[4-120]
-
Y
T
I
L
V
V
D
D
S
P
M
I
V
D
V
F
V
T
M
L
E
R
G
G
-
Y
R
P
I
T
A
F
S
G
E
E
C
L
E
A
L
N
A
T
-
P
P
D
L
V
L
L
D
I
M
M
E
P
M
D
G
W
E
T
L
E
R
I
K
T
D
P
A
T
-
R
D
I
P
V
L
M
L
T
A
K
-
P
L
T
P
E
E
A
N
E
Y
G
S
Y
I
E
D
Y
I
L
K
P
T
--
T
H
H
Q
L
Y
E
A
I
E
H
V
L
A
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------