@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0542: (2016-01-09 )
MSIRPSLPLAGLLLAVALPLSAAQPGAAKGAPLSGCAAKQAAIEAKLETARSFANEGQVAGLEKALSEVKEHCTEAGLLRENKQKVIDSEREVSEREKDLRKAMGKGDPEKIEKRKAKLAEARAELEEAKKGLEQAQAQ
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40........50........60........70-------........80......----..--90.------........100..--.....--110..--.....120.......130.......-----------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSIRPSL
P
L
A
G
L
L
L
A
V
ALPLSAAQPGAAKGAPLSG
C
A
A
K
Q
A
A
I
E
A
K
L
E
T
A
R
S
F
ANEGQVA
G
L
E
K
A
L
S
E
V
K
E
-------
H
C
T
EAG
L
L
R
E
N
K
Q
K
V
I----D
S
--
E
-
R
------
E
V
S
E
R
E
K
D
L
R
K
AM--GKG
D
P
--
E
K
I
E
K
--
R
K
A
K
L
A
E
A
R
A
E
L
E
E
A
K
K
G
L
E
Q
AQAQ-----------------------------------------
36
Fugue
83.99
19%
12
- C2 -
2PMS
1
?
C:
[1-125]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
H
M
D
A
E
E
V
A
P
Q
A
K
I
A
E
L
E
N
Q
V
H
R
L
E
Q
E
L
K
E
I
D
E
A
P
L
Q
S
K
L
D
A
K
K
A
-------
K
L
S
K
L
E
E
L
S
D
K
I
D
E
L
D
----
A
E
--
I
-
A
------
K
L
E
D
Q
L
K
A
A
E
E
-------
E
D
--
Y
F
K
E
G
--
L
E
K
T
I
A
A
K
K
A
E
L
E
K
T
E
A
D
L
K
K
A
V
N
E
-----------------------------------------
12
PsiBlast_PDB
67.66
28%
32
- C2 -
3MTT
-
P85B_HUMAN
A:
[477-574]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
T
A
I
E
A
F
N
E
T
I
K
I
F
E
E
Q
G
Q
T
Q
--
E
K
C
S
K
E
Y
L
E
-------
R
F
R
R
E
G
N
E
K
E
M
Q
R
I
L
L
----
N
S
--
E
-
R
L
K
S
R
I
A
E
I
H
E
S
R
T
K
L
E
Q
Q
L
R
A
Q
A
S
D
N
--
R
E
I
D
K
--
R
M
N
S
L
K
P
D
L
M
Q
L
R
K
I
R
--------------------------------------------------
11
PsiBlast_PDB
65.78
28%
21
- C2 -
3L4Q
1
P85B_BOVIN
C:
[50-147]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
T
A
I
E
A
F
N
E
T
I
K
I
F
E
E
Q
G
Q
T
Q
--
E
K
S
S
K
E
Y
L
E
-------
R
F
R
R
E
G
N
E
K
E
M
Q
R
I
L
L
----
N
S
--
E
-
R
L
K
S
R
I
A
E
I
H
E
S
R
T
K
L
E
Q
E
L
R
A
Q
A
S
D
N
--
R
E
I
D
K
--
R
M
N
S
L
K
P
D
L
M
Q
L
R
K
I
R
D
Q
Y
L
V
W
L
T
Q
-----------------------------------------
42
Fugue
62.41
26%
33
- C2 -
2A3D
-
?
A:
[1-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
S
W
A
E
F
K
Q
R
L
A
A
I
K
T
-------
R
L
Q
A
L
G
---
G
S
E
A
E
L
A
----
A
F
--
E
-
K
------
E
I
A
A
F
E
S
E
L
Q
A
Y
K
--
G
K
G
N
P
--
E
-
V
E
A
--
L
R
K
E
A
A
A
I
R
D
E
L
Q
A
Y
R
H
N
------------------------------------------------
41
Fugue
61.47
21%
48
- C2 -
5CD6
3
?
A:
[2-580]
QTTG
V
V
C
E
E
F
D
Q
I
Q
L
T
H
V
L
T
P
TGPLPTALDPNGVYP
Y
M
S
Y
S
E
TSN
R
P
V
P
K
R
Y
R
M
I
S
L
E
N
EK
V
K
A
I
I
C
PDLCGKVISLTHKESGKEVLYRPDVIKYTRILPRFY
F
V
A
G
G
I
E
V
S
F
PISHSPTQN
E
P
V
L
Y
Q
I
D
H
T
GD
R
T
Y
V
T
C
GERESHYG
M
Q
W
S
V
E
Y
S
L
G
DKDE
C
L
T
Q
R
V
V
Y
Y
N
PGK
Q
A
Y
P
W
M
S
W
S
N
A
A
L
P
C
A
PDTQYDFPN
G
T
V
L
S
H
A
S
T
L
D
T
I
D
WKTEGTHHERDIK
E
M
T
G
Y
F
W
KTKDVN
A
F
G
A
Y
T
PSLG
S
G
L
Y
H
I
A
D
ESSTP
G
I
K
L
W
S
YGVAGD
K
E
W
S
M
LSTPDR
Q
P
Y
V
E
I
Q
G
G
PISDQS
I
K
L
E
L
R
PG
E
K
K
N
H
V
E
Y
W
I
P
T
D
H
P
L
D
IYSLKVPALRLRPIDR
I
P
L
F
D
WARKNES
S
I
W
I
A
L
A
D
A
Y
K
N
KSTLPAAPYPEDGQWAPSGMEDL
D
D
A
F
R
W
A
I
Q
I
S
P
R
P
E
R
D
Y
W
Q
F
H
Y
G
T
W
L
A
G
R
E
R
V
E
E
A
I
E
Q
L
S
I
P
D
I
D
L
A
K
A
-
L
L
A
R
L
Y
V
R
R
-----
Q
A
W
E
K
A
R
D
T
Y
A
A
I
P
E
TS-----
W
L
N
L
H
P
Q
L
V
I
E
R
D
K
V
L
----
K
K
F
G
T
-
E
------
A
L
P
E
R
E
K
W
L
D
K
I
N
--
A
S
S
D
---
E
W
V
V
E
--
R
K
V
Q
L
L
I
D
K
K
Q
Y
Q
E
A
K
D
L
L
L
S
T
H
F
Q
KVHQTY
T
R
T
G
L
W
E
Q
I
N
E
G
L
GLSPQPVPEQLGEDRLARFEYE
35
HHSearch
58.07
26%
71
- C2 -
2PMS
-
?
C:
[65-120]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
S
D
K
I
D
----
E
L
--
D
-
A
------
E
I
A
K
L
E
D
Q
L
K
A
A
E
--
E
------
E
D
Y
F
K
EG
L
E
K
T
I
A
A
K
K
A
E
L
E
K
T
E
A
D
L
K
K
A
V
N
E
-----------------------------------------
23
HHSearch
57.21
13%
-41
- C2 -
1Z0K
-
RBNS5_HUMAN
B:
[25-63]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
Q
Q
I
H
N
I
T
S
F
I
R
Q
A
K
A
A
G
R
M
D
E
V
R
T
L
Q
E
N
L
R
Q
L
Q
D
-------
E
Y
D
Q
Q
Q
T
-------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
56.63
28%
30
- C2 -
4MTN
-
?
A:
[338-406]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
A
E
G
L
V
S
Q
G
F
L
S
F
E
D
L
S
V
I
E
P
D
E
--------
L
M
E
M
G
S
L
T
Q
E
Q
A
D
V
I
V
E
Y
A
E
R
--
E
-
S
------
E
R
I
E
K
E
Q
D
L
R
R
A
T
--
E
K
A
E
R
--
Q
S
Q
E
---------------------------------------------------------------------
43
Fugue
54.32
16%
46
- C2 -
3SJA
-
GET1_YEAST
C:
[1-61]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
E
L
S
K
K
Y
L
----
A
K
--
V
-
K
------
E
R
H
E
L
K
E
F
N
N
S
I
S
--
A
Q
D
N
Y
--
A
K
W
T
K
--
N
N
R
K
L
D
S
L
D
K
E
I
N
N
L
K
D
E
I
Q
S
E
N
H
H
-----------------------------------------
20
HHSearch
52.54
14%
-12
- C2 -
1YZM
-
RBNS5_HUMAN
A:
[461-497]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
I
H
N
I
T
S
F
I
R
Q
A
K
A
A
G
R
M
D
E
V
R
T
L
Q
E
N
L
R
Q
L
Q
D
-------
E
Y
D
-----------------------------------------------------------------------------------------------------------------------------
39
Fugue
51.68
22%
22
- C2 -
4WY4
-
B:
[1-58]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
W
E
T
L
E
----
A
D
--
L
-
I
------
E
L
S
Q
L
V
T
D
F
S
L
L
V
--
N
S
-
Q
Q
--
E
K
I
D
S
--
I
A
D
H
V
N
S
A
A
V
N
V
E
E
G
T
K
N
L
G
K
A
A
K
Y
-----------------------------------------
24
HHSearch
51.35
14%
-20
- C2 -
3V1A
-
?
A:
[6-42]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
I
K
N
I
H
S
F
I
H
Q
A
K
A
A
G
R
M
D
E
V
R
T
L
Q
E
N
L
H
Q
L
M
H
-------
E
Y
F
Q
Q
S
D
-------------------------------------------------------------------------------------------------------------------------
45
Fugue
50.92
33%
49
* C2 *
2QDQ
-
A:
[2496-2529]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
I
--
A
Q
I
I
A
--
A
Q
E
E
M
L
R
K
E
R
E
L
E
E
A
R
K
K
L
A
Q
I
R
Q
Q
Q----------------------------------------
1
PsiBlast_PDB
50.91
40%
-14
- C2 -
2JF6
1
SG1_RAUSE
A:
[395-438]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
Y
K
L
L
V
Y
T
K
E
T
YHVPVL
Y
V
T
E
S
G
M
V
E
E
N
K
T
K
I
L
----
L
S
--
E
A
R
------
R
D
A
E
R
T
D
Y
H
Q
K
H
L
--
A
S
V
R
D
--
A
I
D
D
G
--
V
N
V
K
G
Y
F
V
W
S
F
F
D
N
F
E
W
N
L
G
Y
I
C
R
Y
-----------------------------------------
26
HHSearch
50.51
18%
48
- C2 -
3SJA
-
GET1_YEAST
C:
[7-56]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
L
----
A
K
--
V
-
K
------
E
R
H
E
L
K
E
F
N
N
S
I
S
--
A
Q
D
N
Y
--
A
K
W
T
K
--
N
N
R
K
L
D
S
L
D
K
E
I
N
N
L
K
D
E
I
Q
S
E
N
H
H
-----------------------------------------
25
HHSearch
49.68
17%
51
- C2 -
3VLC
-
GET1_YEAST
E:
[30-83]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
Y
L
----
A
K
--
V
-
K
------
E
R
H
E
L
K
E
F
N
N
S
I
S
--
A
Q
D
N
Y
--
A
K
W
T
K
--
N
N
R
K
L
D
S
L
D
K
E
I
N
N
L
K
D
E
I
Q
S
E
N
K
A
-----------------------------------------
4
PsiBlast_PDB
49.51
40%
-22
- C2 -
3ZJ8
1
SG1_RAUSE
A:
[395-438]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
Y
K
L
L
V
Y
T
K
E
T
YHVPVL
Y
V
T
E
S
G
M
V
E
E
N
K
T
K
I
L
----
L
S
--
E
A
R
------
R
D
A
E
R
T
D
Y
H
Q
K
H
L
--
A
S
V
R
D
--
A
I
D
D
G
--
V
N
V
K
G
Y
F
V
W
S
F
F
D
N
F
E
W
N
L
G
Y
I
C
R
Y
-----------------------------------------
21
HHSearch
49.02
19%
31
- C2 -
2B9C
-
TPM1_RAT
A:
[139-207]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
M
E
I
Q
E
I
Q
L
K
E
A
K
H
-------
I
A
------
E
D
A
D
R
K
Y
E
----
E
V
--
A
-
R
------
K
L
V
I
I
E
S
D
L
E
R
A
E
--
E
R
A
E
L
S
E
G
K
C
A
E
--
L
E
E
E
L
K
T
V
T
N
N
L
K
S
L
---------------------------------------------------
33
HHSearch
48.53
17%
59
- C2 -
3SJB
-
GET1_YEAST
C:
[23-74]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
Y
L
----
A
K
--
V
-
K
------
E
R
H
E
L
K
E
F
N
N
S
I
S
--
A
Q
D
N
Y
--
A
K
W
T
K
--
N
N
R
K
L
D
S
L
D
K
E
I
N
N
L
K
D
E
I
Q
S
E
N
K
A
-----------------------------------------
10
PsiBlast_PDB
47.95
34%
59
- C2 -
4DCI
-
?
A:
[48-102]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
Q
E
G
Q
T
V
V
----
D
Q
--
V
-
R
------
R
Q
S
A
N
P
L
D
P
R
V
Q
----------
E
Q
V
A
N
--
I
Q
Q
Q
V
A
G
K
R
S
E
L
E
E
Q
K
R
N
L
L
Q
Q
Q
A
Q
-----------------------------------------