@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA1123: (2016-01-26 )
MSITSTDICQAADALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRDDVMRLGREQLQILLEQNINERLNIGEPLLVYLRRQDLPEITAQRQLR
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-......10--........20...---.....30---.....-----.---...40..-------......50...-----.....60....------....70-----.----.....--..80-.....--.---..90..--..-.-...100....------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSI-
T
S
T
D
I
C
Q
A
--
A
D
A
L
K
G
F
V
GFNRK---T
G
R
Y
I
V
----
R
FSED-----S---FGMDVAD-------DSIT
P
T
S
E
F
V
W
-----
S
S
V
R
D
D
V
M
R
L
G
------
R
E
Q
L
Q
I
-----
L
----
L
E
QN
I
--
N
E
RL-NIG
E
P
--
L
---
L
V
Y
L
R
R--QD-
L
-
P
E
I
T
A
QRQLR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
93.64
100%
-133
- C5 -
2HG6
-
?
A:
[1-106]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
I
-
T
S
T
D
I
C
Q
A
--
A
D
A
L
K
G
F
V
G
F
N
R
K
---
T
G
R
Y
I
V
----
R
F
S
E
D
-----
S
---
F
G
M
D
V
A
D
-------
D
S
I
T
P
T
S
E
F
V
W
-----
S
S
V
R
D
D
V
M
R
L
G
------
R
E
Q
L
Q
I
-----
L
----
L
E
Q
N
I
--
N
E
R
L
-
N
I
G
E
P
--
L
---
L
V
Y
L
R
R
--
Q
D
-
L
-
P
E
I
T
A
Q
R
Q
L
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_PDB
93.64
100%
-133
- C5 -
2HG6
-
?
A:
[1-106]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
I
-
T
S
T
D
I
C
Q
A
--
A
D
A
L
K
G
F
V
G
F
N
R
K
---
T
G
R
Y
I
V
----
R
F
S
E
D
-----
S
---
F
G
M
D
V
A
D
-------
D
S
I
T
P
T
S
E
F
V
W
-----
S
S
V
R
D
D
V
M
R
L
G
------
R
E
Q
L
Q
I
-----
L
----
L
E
Q
N
I
--
N
E
R
L
-
N
I
G
E
P
--
L
---
L
V
Y
L
R
R
--
Q
D
-
L
-
P
E
I
T
A
Q
R
Q
L
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
93.64
100%
-133
* C5 *
2HG6
-
?
A:
[1-106]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
I
-
T
S
T
D
I
C
Q
A
--
A
D
A
L
K
G
F
V
G
F
N
R
K
---
T
G
R
Y
I
V
----
R
F
S
E
D
-----
S
---
F
G
M
D
V
A
D
-------
D
S
I
T
P
T
S
E
F
V
W
-----
S
S
V
R
D
D
V
M
R
L
G
------
R
E
Q
L
Q
I
-----
L
----
L
E
Q
N
I
--
N
E
R
L
-
N
I
G
E
P
--
L
---
L
V
Y
L
R
R
--
Q
D
-
L
-
P
E
I
T
A
Q
R
Q
L
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
42.31
21%
-30
- C5 -
2SCU
1
SUCD_ECOLI
A:
[1-119]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SIL
I
D
K
-
N
T
K
V
I
C
Q
-----------
G
F
T
G
S
---
Q
G
T
F
H
S
----
E
Q
A
I
A
Y
GTKM
V
---
G
G
V
T
P
G
K
-------
G
G
T
T
H
L
G
L
P
V
F
-----
N
T
V
R
E
A
V
A
A
T
G
------
A
T
A
S
V
I
YVPAP
F
----
C
K
D
S
I
--
L
E
A
I
-
D
A
G
I
K
--
L
---
I
I
T
I
T
E
GI
P
T
-
L
-
D
M
L
T
V
K
V
K
L
D
E
A
G
V
R
M
I
G
P---------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
37.36
23%
-149
- C7 -
3QYY
3
?
A:
[68-98]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
V
R
L
--
V
E
S
A
Y
G
W
L
G
-------
A
Q
D
W
I
G
----
R
W
G
G
D
-----
E
---
F
L
I
G
V
H
A
-------
S
E
D
E
A
T
L
K
L
N
Q
-----
W
L
S
M
L
E
R
E
A
P
L
------
H
V
S
A
G
S
-----
A
----
V
C
E
V
G
--
I
D
A
T
-
E
L
Y
R
R
--
A
---
D
A
A
M
Y
R
--
A
K
-
F
-
S
G
G
R
R
L
V
R
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
37.32
13%
-46
* C6 *
3O7V
1
X:
[2-118]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ETV
L
D
F
M
F
N
F
Y
H
Q
T
E
--
E
H
K
F
Q
E
Q
V
S
K
E
L
I
---
G
L
V
V
L
T
----
K
Y
N
N
K
-----
T
---
Y
R
V
D
D
I
D
-------
W
D
Q
N
P
K
S
T
F
K
K
-----
A
D
-------
G
S
------
E
V
S
F
L
E
-----
Y
----
Y
R
K
Q
Y
--
N
Q
E
I
T
D
L
K
Q
P
M-
L
---
V
S
Q
P
K
G
--
P
A
M
L
I
P
E
L
C
Y
L
T
G
L
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
PsiBlast_PDB
37.29
30%
-47
- C7 -
1PEQ
-
RIR3_SALTY
A:
[518-577]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
T
F
A
G
F
A
Q
S
RYA
S
G
D
Y
F
T
----
Q
Y
L
Q
D
-----
D
---
W
Q
P
K
T
A
K
V
R
A
L
F
A
R
S
G
I
T
L
P
T
R
E
M
W
-----
L
K
L
R
D
D
V
M
R
Y
G
------
I
Y
N
Q
N
L
-----
Q
----
A
V
P
P
T
--
G
S
I
S
-
Y
I
N
H
A
--
T
---
S
S
I
H
P
I
--
V
A
-
K
-
I
E
I
R
K
E
G
K
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
37.00
16%
-55
- C5 -
3BXV
1
?
A:
[1-308]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPK
P
Y
I
A
I
N
M
A
D
L
KNE
P
K
T
F
E
M
F
S
A
-
V
G
P
K
V
C
M
V
--
T
A
R
H
P
G
F
V
G
F
Q
N
H
---
V
Q
I
G
V
L
PFGE
R
F
G
G
A
-----
K
---
M
D
M
T
K
E
S
-------
S
T
V
R
V
L
Q
Y
T
M
W
-----
K
D
-
W
K
D
H
E
E
M
H
------
R
Q
N
W
S
Y
-----
L
----
F
R
L
C
Y
--
S
C
A
S
-
Q
M
V
W
G
--
P
W
E
P
I
Y
E
I
K
Y
--
A
D
-
M
-
P
I
N
T
E
M
T
D
F
T
A
V
V
G
K
K
F
A
E
GKPLEIPVISQPYGK
R
V
V
A
F
G
E
H
T
V
I
PGK
E
E
Q
F
E
D
A
I
I
K
T
L
E
M
F
K
RAPGFL
G
A
M
L
L
K
E
IGVSGIGSFQFG
S
K
G
F
H
Q
L
L
E
SPGSLEPDPNNVMYQAPEAKPTP
P
Q
Y
I
V
H
V
E
W
AN
L
D
A
L
Q
F
G
M
G
R
VLLS
P
E
Y
R
E
V
H
D
E
A
L
D
T
LIYGP
Y
I
R
I
I
N
PVMEGTF
W
R
E
Y
L
N
E
35
Fugue
36.45
8%
-82
- C3 -
1KHI
-
HEX1_NEUCR
A:
[27-173]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSA
S
Q
T
V
T
I
P
CHHIRLG
D
I
L
I
L
QG
R
P
C
Q
V
-
I
R
I
S
T
S
A
A
TG
Q
H
R
Y
L
G
V
D
L
F
T
K
Q
---
L
H
E
E
S
S
----
F
V
S
N
P
-----
A
---
P
S
V
V
V
Q
T
-------
M
L
G
P
V
F
K
Q
Y
R
V
-----
L
D
M
Q
D
G
S
I
V
A
M
TETGDV
K
Q
N
L
P
V
-----
I
DQSS
L
W
N
R
L
--
Q
K
A
F
-
E
S
G
R
G
S
V
R
---
V
L
V
V
S
D
--
H
G
-
R
-
E
M
A
V
D
M
K
V
V
H
G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_PDB
36.31
30%
-47
- C7 -
1PEO
-
RIR3_SALTY
A:
[518-577]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
T
F
A
G
F
A
Q
S
RYA
S
G
D
Y
F
T
----
Q
Y
L
Q
D
-----
D
---
W
Q
P
K
T
A
K
V
R
A
L
F
A
R
S
G
I
T
L
P
T
R
E
M
W
-----
L
K
L
R
D
D
V
M
R
Y
G
------
I
Y
N
Q
N
L
-----
Q
----
A
V
P
P
T
--
G
S
I
S
-
Y
I
N
H
A
--
T
---
S
S
I
H
P
I
--
V
A
-
K
-
I
E
I
R
K
E
G
K
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_PDB
36.18
30%
-50
- C7 -
2BQ1
-
RIR3_SALTY
E:
[518-577]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
T
F
A
G
F
A
Q
S
RYA
S
G
D
Y
F
T
----
Q
Y
L
Q
D
-----
D
---
W
Q
P
K
T
A
K
VRALFAR
S
G
I
T
L
P
T
R
E
M
W
-----
L
K
L
R
D
D
V
M
R
Y
G
------
I
Y
N
Q
N
L
-----
Q
----
A
V
P
P
T
--
G
S
I
S
-
Y
I
N
H
A
--
T
---
S
S
I
H
P
I
--
V
A
-
K
-
I
E
I
R
K
E
G
K
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
35.20
16%
-44
- C4 -
2IZV
3
A:
[17-179]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NL
Y
F
Q
S
M
L
VPD
L
L
Q
I
N
N
NP
C
Y
W
-
G
V
M
D
K
Y
A
A
--
E
A
L
L
E
G
-----
K
P
---
E
G
T
F
L
L
----
R
D
S
A
Q
-----
E
DYL
F
S
V
S
F
R
R
-------
Y
S
R
S
L
H
A
R
I
E
Q
W
NHNF
S
F
D
A
H
D
P
C
V
F
H
------
S
P
D
I
T
G
-----
L
----
L
E
H
Y
K
--
D
P
S
A
-
C
M
F
F
E
--
P
---
L
L
S
T
P
L
--
I
R
-
T
-
F
P
F
S
L
Q
H
I
C
R
T
V
I
C
N
C
T
T
Y
D
G
I
D
A
LPIP
S
S
M
K
L
Y
L
K
EY
H
Y
K
S
KVR-------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
34.75
15%
-52
- C7 -
1WFX
4
KPTA_AERPE
A:
[7-68]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
---
T
L
A
G
I
L
----
R
H
H
P
G
-----
R
---
Y
G
V
R
L
T
R
-------
E
G
W
A
R
V
S
E
V
V
E
-----
G
L
R
K
A
G
W
S
W
V
E
------
E
W
H
I
V
G
-----
V
----
A
L
H
D
P
--
K
G
R
Y
-
E
L
R
N
G
--
E
---
I
R
A
R
Y
G
--
H
S
-
I
-
P
V
N
V
E
P
L
P
G
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
PsiBlast_PDB
34.63
30%
-53
- C7 -
1PEU
-
RIR3_SALTY
A:
[518-577]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
T
F
A
G
F
A
Q
S
RYA
S
G
D
Y
F
T
----
Q
Y
L
Q
D
-----
D
---
W
Q
P
K
T
A
K
V
R
A
L
F
A
R
S
G
I
T
L
P
T
R
E
M
W
-----
L
K
L
R
D
D
V
M
R
Y
G
------
I
Y
N
Q
N
L
-----
Q
----
A
V
P
P
T
--
G
S
I
S
-
Y
I
N
H
A
--
T
---
S
S
I
H
P
I
--
V
A
-
K
-
I
E
I
R
K
E
G
K
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_PDB
34.48
30%
-58
- C7 -
1PEM
-
RIR3_SALTY
A:
[518-577]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
T
F
A
G
F
A
Q
S
RYA
S
G
D
Y
F
T
----
Q
Y
L
Q
D
-----
D
---
W
Q
P
K
T
A
K
V
R
A
L
F
A
R
S
G
I
T
L
P
T
R
E
M
W
-----
L
K
L
R
D
D
V
M
R
Y
G
------
I
Y
N
Q
N
L
-----
Q
----
A
V
P
P
T
--
G
S
I
S
-
Y
I
N
H
A
--
T
---
S
S
I
H
P
I
--
V
A
-
K
-
I
E
I
R
K
E
G
K
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
33.42
15%
-36
- C6 -
4J72
3
MRAY_AQUAE
A:
[20-363]
F
A
F
N
V
L
K
Y
I
T
F
R
S
F
T
A
V
L
I
A
F
F
L
T
L
V
L
S
P
S
F
I
N
R
LKKYT
P
T
M
G
G
I
V
I
L
I
V
V
T
L
S
T
L
L
L
MRWDI
K
Y
T
W
V
V
L
L
S
F
L
S
F
G
T
I
G
F
W
D
D
Y
V
K
L
KNKKGIS
I
K
T
K
F
L
L
Q
V
L
S
A
S
L
I
S
V
L
I
YYWADIDT
I
L
Y
F
P
FFKE
L
Y
V
D
L
G
V
L
Y
L
P
F
A
V
F
V
I
V
G
S
A
N
A
V
N
L
T
D
G
L
DGLA
I
G
P
A
M
T
T
A
T
A
L
G
V
V
A
Y
A
V
G
H
S
K
I
A
Q
Y
L
N
I
P
Y
V
P
YA
G
E
L
T
V
-
F
C
F
A
L
V
G
A
--
G
L
G
F
L
W
F
N
S
F
P
A
Q
---
M
--
F
M
G
----
D
V
G
S
L
-----
S
---
I
G
A
S
L
A
T
-------
V
A
L
L
T
K
S
E
F
I
F
-----
A
V
A
A
G
V
F
V
F
E
T
------
I
S
V
I
L
Q
-----
I
----
I
Y
F
R
W
T
G
G
K
R
L
-
F
K
R
A
P
--
F
---
H
H
H
L
E
L
--
N
G
-
L
-
P
E
P
K
I
V
V
R
M
W
I
I
S
I
L
L
A
I
I
A
I
S
MLK---------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
32.54
43%
-167
- C9 -
1BG1
-
STAT3_MOUSE
A:
[475-488]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
---
P
G
T
F
L
L
----
R
F
S
E
S
-----
S
---
K
E
G
G
V
T
F
-------
T
W
V
E
K
D
I
S
G
S
T
-----
Q
I
Q
S
V
E
P
Y
T
K
Q
------
Q
L
N
N
M
S
-----
F
----
A
E
I
I
M
--
G
Y
K
I
-
M
D
A
T
N
--
I
---
L
V
S
P
L
V
--
Y
L
-
Y
-
P
D
I
P
K
E
E
A
F
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
31.03
11%
-7
- C6 -
4JGI
1
?
A:
[1-211]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------VID
L
N
A
S
A
Q
A
M
S
D
LD
E
G
A
I
N
E
V
V
D
K
V
M
A
K
AD
A
D
A
A
Q
E
-
L
I
K
A
F
Q
Q
G
--
M
T
K
V
G
E
R
F
D
S
G
E
Y
---
F
I
G
D
L
I
----
F
A
G
E
I
-----
L
---
Q
A
A
M
D
K
L
-------
K
P
A
L
K
R
A
K
I
V
L
-----
A
T
V
E
G
D
L
H
D
I
G
------
K
N
I
F
R
T
-----
M
----
A
E
A
S
G
--
F
E
V
F
-
D
L
G
----------------
I
D
-
V
-
P
V
K
I
I
V
D
K
V
K
E
VNPE
I
V
G
L
S
G
V
L
T
L
A
L
D
S
M
R
E
T
V
D
A
L
K
A
E
GLRND
L
K
V
I
I
G
G
VPVN
E
N
V
C
Q
R
V
GADDFSTN
A
A
D
G
V
K
I
C
Q
R
W
V
G----------------------------------------------------------------------------------------------------
8
HHSearch
30.13
20%
-5
* C8 *
2Q5X
-
?
A:
[845-859]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
F
K
E
Y
R
P
E
---
T
G
S
W
V
F
----
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
27.33
29%
-150
- C9 -
2CRH
-
A:
[45-58]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
---
D
G
T
F
L
V
----
R
Q
R
V
K
-----
D
---
A
A
E
F
A
I
S
-------
I
K
Y
N
V
E
V
K
H
I
K
-----
I
M
T
A
E
G
L
Y
R
I
T
------
E
K
K
A
F
R
-----
G
----
L
T
E
L
V
--
E
F
Y
Q
-
Q
N
S
L
K
--
D
---
C
F
K
S
L
D
--
T
T
-
L
-
Q
F
P
F
K
E
P
E
K
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------