@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA1719: (2016-01-31 )
MAQIFNPNPGNTLDTVANALKEQANAANKDVNDAIKALQGTDNADNPALLAELQHKINKWSVIYNINSTVTRALRDLMQGILQKI
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....-....10.-----.......20........30........40........50........60.-.-.....-.70........80....------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAQIF-NPNPGN
T
-----
L
D
T
V
A
N
A
L
K
E
Q
ANAANK
D
V
N
D
A
I
K
A
LQGTDNAD
N
P
A
L
L
A
E
L
Q
H
KINK
W
S
V
-
I
-
Y
NI
N
S
-
T
V
T
R
A
L
R
D
L
M
Q
G
I
L
Q
KI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
65.78
23%
-63
- C2 -
1GJT
-
A:
[1-65]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
A
I
F
-
V
L
N
A
Q
H
D
-----
E
A
V
D
A
N
S
L
A
E
A
K
V
L
A
N
R
E
L
D
K
Y
-----
G
V
-
S
D
Y
Y
K
N
L
I
N
N
-----------------
A
-
K
T
V
E
G
V
K
A
L
I
D
E
I
L
A
A
L
P-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
65.76
96%
-135
- C2 -
2UWJ
1
F:
[1-32]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
H
K
I
N
K
W
S
V
-
I
-
Y
N
I
N
S
-
T
V
T
R
A
L
R
D
L
M
Q
G
I
L
Q
K
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
65.76
100%
-137
- C2 -
2UWJ
1
F:
[2-32]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
K
I
N
K
W
S
V
-
I
-
Y
N
I
N
S
-
T
V
T
R
A
L
R
D
L
M
Q
G
I
L
Q
K
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
65.62
25%
-67
- C2 -
2CA5
3
MXIH_SHIFL
A:
[20-80]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
G
T
Q
T
L
Q
G
E
L
T
L
A
L
D
K
L
A
--
K
N
P
S
N
P
Q
L
L
A
E
Y
Q
S
K
L
S
E
Y
T
L
-
Y
-
R
N
A
Q
S
-
N
T
V
K
V
I
K
D
V
D
A
A
I
L
E
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
65.54
27%
-48
- C2 -
2CA5
3
MXIH_SHIFL
A:
[20-81]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
G
T
Q
T
L
Q
G
E
L
T
L
A
L
D
K
L
A
K
---------
N
P
S
N
P
Q
L
L
A
E
Y
Q
S
K
L
S
E
Y
T
L
-
Y
-
R
N
A
Q
S
-
N
T
V
K
V
I
K
D
V
D
A
A
I
L
E
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
65.09
22%
-43
- C2 -
2G0U
-
?
A:
[1-92]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
N
P
P
-
T
P
L
L
A
D
Y
EWSGY
L
T
G
I
G
R
A
F
D
D
G
V
K
D
L
N
K
Q
L
Q
D
A
Q
A
N
L
T
K
--
N
P
S
D
P
T
A
L
A
N
Y
Q
M
I
M
S
E
Y
N
L
-
Y
-
R
N
A
Q
S
-
S
A
V
K
S
M
K
D
I
D
S
S
I
L
E
H
H
HHHH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
65.09
25%
-66
- C2 -
2CA5
3
MXIH_SHIFL
A:
[20-80]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
G
T
Q
T
L
Q
G
E
L
T
L
A
L
D
K
L
--
A
K
N
P
S
N
P
Q
L
L
A
E
Y
Q
S
K
L
S
E
Y
T
L
-
Y
-
R
N
A
Q
S
-
N
T
V
K
V
I
K
D
V
D
A
A
I
L
E
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
63.59
25%
-30
- C2 -
3J0R
-
MXIH_SHIFL
A:
[6-80]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
D
D
W
T
-----
L
S
S
L
S
E
T
F
D
D
G
T
Q
T
L
Q
G
E
L
T
L
A
L
D
K
L
--
A
K
N
P
S
N
P
Q
L
L
A
E
Y
Q
S
K
L
S
E
Y
T
L
-
Y
-
R
N
A
Q
S
-
N
T
V
K
V
I
K
D
V
D
A
A
I
I
Q
N
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
62.29
24%
-53
- C2 -
2G0U
-
?
A:
[17-86]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
-----
L
T
G
I
G
R
A
F
D
D
G
V
K
D
L
N
K
Q
L
Q
D
A
Q
A
N
L
T
--
K
N
P
S
D
P
T
A
L
A
N
Y
Q
M
I
M
S
E
Y
N
L
-
Y
-
R
N
A
Q
S
-
S
A
V
K
S
M
K
D
I
D
S
S
I
L
E
H
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
61.83
21%
-50
- C2 -
4WZI
5
PDE4B_HUMAN
A:
[85-576]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VT
P
F
A
Q
V
L
A
S
L
R
S
V
R
N
N
F
T
IQ
K
L
A
M
E
T
L
E
E
L
D
W
A
L
D
Q
L
E
T
I
QT
Y
R
S
V
S
E
M
A
-
S
N
K
F
K
R
M
-----
L
N
R
E
L
T
H
L
S
E
M
S
R
C
G
N
Q
V
S
E
Y
I
S
N
T
F
L
--
D
K
E
N
E
D
H
L
A
K
E
L
E
D
-
L
N
K
W
G
L
N
I
-
F
N
V
A
G
Y
S
H
N
R
P
L
T
A
I
M
Y
A
I
F
Q
E
R
D
L
L
K
T
F
RIS
S
D
T
F
I
T
Y
M
M
T
L
E
D
H
YHSDVAYHN
S
L
H
A
A
D
V
A
Q
S
T
H
V
L
L
S
TPALDAVFT
D
L
E
I
L
A
A
I
F
A
A
A
I
H
DVDHPGVS
N
Q
F
L
I
N
T
NS
E
L
A
L
M
Y
NDES
V
L
E
N
H
H
L
A
V
G
F
K
L
L
Q
EEHADIFMNLT
K
K
Q
R
Q
T
L
R
K
M
V
I
D
M
V
L
A
T
DMSK
H
M
S
L
L
A
D
L
K
T
M
V
E
T
K
K
V
T
SSG
V
L
L
L
DN
Y
T
D
R
I
Q
V
L
R
N
M
V
H
A
A
D
L
SNPTKS
L
E
L
Y
R
Q
W
T
D
R
I
M
E
E
F
F
Q
Q
G
D
K
E
R
E
R
GMEISPMADKHTAC
V
E
K
S
Q
V
G
F
I
D
Y
I
V
H
P
L
W
E
T
W
A
D
L
V
QPDA
Q
D
I
L
D
T
L
E
D
N
R
N
W
Y
Q
A
M
IP
38
Fugue
60.10
10%
-76
- C2 -
1O57
6
PURR_BACSU
A:
[2-276]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KFR
R
S
G
R
L
V
D
L
T
N
Y
L
-
L
T
H
P
H
E
L
-----
I
P
--
L
T
F
F
S
E
R
Y
E
S
A
K
S
S
I
S
E
D
L
T
I
I
K
Q
T
F
E
Q
Q
G
I
G
T
L
L
T
V
P
G
A
A
G
G
V
K
Y
-
I
-
P
K
M
K
----
Q
A
E
A
E
E
F
V
Q
T
L
G
Q
S
L
ANPERILPGGYVYL
T
D
I
L
G
K
P
S
V
L
S
K
V
G
K
L
F
A
S
V
F
A
EREID
V
V
M
T
V
A
TKG
I
P
L
A
Y
A
A
A
S
Y
L
N
V
P
V
V
I
V
R
KDGS
T
V
S
I
N
Y
V
S
GSSN
R
I
Q
T
M
S
L
A
KRSMKTGSN
V
L
I
I
D
DFMKAG
G
T
I
N
G
M
I
N
L
L
D
E
F
NANVA
G
I
G
V
LVEAEGVDERLV
D
E
Y
M
S
L
L
T
L
S
TINMKEK
S
I
E
I
Q
NGN
F
L
R
F
F
KDN------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
55.49
67%
-61
- C2 -
2P58
-
?
B:
[50-86]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
A
D
L
Q
H
S
I
N
K
W
S
V
-
I
-
Y
N
I
N
S
-
T
I
V
R
S
M
K
D
L
M
Q
G
I
L
Q
K
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
53.63
60%
-61
- C2 -
2P58
-
?
B:
[50-86]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
A
D
L
Q
H
S
I
N
K
W
S
V
-
I
-
Y
N
I
N
S
-
T
I
V
R
S
M
K
D
L
M
Q
G
I
L
Q
K
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
52.82
31%
-52
- C2 -
3SZR
-
MX1_HUMAN
A:
[375-421]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
D
K
V
N
A
F
N
Q
D
I
T
-
A
L
M
Q
G
E
E
T
V
G
E
E
D
I
R
L
F
T
R
L
R
H
E
F
H
K
W
S
T
-
I
-
I
E
N
N
F
-
Q
E
G
H
K
I
L
S
R
K
I
Q
K
F
E
N
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
47.14
27%
-23
- C2 -
2X43
-
?
S:
[8-55]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
M
K
N
A
A
A
E
A
K
D
N
V
H
D
K
I
Q
E
L
K
--
D
D
V
G
N
K
A
A
------------
E
-
V
-
R
D
A
V
S
-
S
T
V
E
S
I
K
D
K
L
S
G
G
S
S
S
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
46.43
17%
-43
- C2 -
4O2X
-
MALE_ECOLI
A:
[5-483]
EG
K
L
V
I
W
I
N
GDKG
Y
N
G
L
A
E
V
G
K
K
F
E
K
D
TG
I
K
V
T
V
E
H
P
D
K
L
E
E
K
F
P
Q
V
A
A
T
GDGPD
I
I
F
W
A
HDR
F
G
G
Y
A
Q
S
GLL
A
E
I
T
P
D
K
A
F
Q
D
K
L
Y
P
F
T
W
D
A
V
RYNGKLI
A
Y
P
I
A
V
E
A
L
S
L
I
Y
N
KDLLPNPPKTWEE
I
P
A
L
D
K
E
L
K
A
K
G
K
S
A
L
MFNLQEPYFT
W
P
L
I
A
A
DGGYAFKYENGKYDIKDVGVDN
A
G
A
K
A
G
L
T
F
L
V
D
L
I
K
N
KHMNADTD
Y
S
I
A
E
A
A
F
N
K
GETA
M
T
I
N
G
PWA
W
S
N
I
D
T
S
KVN
Y
G
V
T
V
L
P
T
F
KGQPSK
P
F
V
G
V
L
S
A
G
I
N
AASPN
K
E
L
A
K
E
F
L
E
N
YLLT
D
E
G
L
E
A
V
N
K
D
KPLGAVAL
K
S
Y
E
E
E
L
A
KD
P
R
I
A
A
T
M
E
N
A
Q
K
G
E
I
M
P
N
I
P
Q
M
S
A
-----
F
W
Y
A
V
R
T
A
V
I
N
A
A
S
G
R
Q
T
V
D
E
A
L
A
A
A
Q
T
N
A
A
A
N
L
E
K
I
K
K
L
R
N
V
I
T
S
A
W
K
V
-
I
L
Y
N
D
D
I
-
H
N
F
T
Y
V
T
D
V
I
V
K
V
V
G
Q
I
S
K
A
K
A
H
T
I
T
V
E
A
H
S
TGQALI
L
S
T
W
K
S
K
A
E
K
Y
C
Q
E
L
Q
Q
N
G
L
T
V
S
I
I
H
ES------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
45.34
31%
-50
- C2 -
3ZYS
-
MX1_HUMAN
B:
[375-421]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
D
K
V
N
A
F
N
Q
D
I
T
-
A
L
M
Q
G
E
E
T
V
G
E
E
D
I
R
L
F
T
R
L
R
H
E
F
H
K
W
S
T
-
I
-
I
E
N
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
44.28
31%
-26
- C2 -
3LJB
-
MX1_HUMAN
A:
[375-421]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
D
K
V
N
A
F
N
Q
D
I
T
-
A
L
M
Q
G
E
E
T
V
G
E
E
D
I
R
L
F
T
R
L
R
H
E
F
H
K
W
S
T
-
I
-
I
E
N
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
42.97
25%
107
- C- -
2V6L
-
?
0:
[6-80]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
D
D
W
T
-----
L
S
S
L
S
E
T
F
D
D
G
T
Q
T
L
Q
G
E
L
T
L
A
L
D
K
L
--
A
K
N
P
S
N
P
Q
L
L
A
E
Y
Q
S
K
L
S
E
Y
T
L
-
Y
-
R
N
A
Q
S
-
N
T
V
K
V
I
K
D
V
D
A
A
I
I
Q
N
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
41.51
31%
-84
- C2 -
3ZQB
-
PRGI_SALTY (first)
A:
[43-80]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
P
A
L
L
A
A
Y
Q
S
K
L
S
E
Y
N
L
-
Y
-
R
N
A
Q
S
-
N
T
V
K
V
F
K
D
I
D
A
A
I
I
Q
N
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------