@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA1889: (2016-02-02 )
MGRTVEDVDMLNHHFRVCSATVYRPPGDGCQSATSQPSAWWMAAKESRSGQLRRVEHVAFEGHPAAVLAGRAVEDRAVVGEADGQAEADVGSVLRGVQLAFEVQLEHARLDAFQADGDVRVVHGLAFAAALLGADGEGHGVSVHVLLQLAWGRRRQRGGQTTGRRAGWPVLAAVGAARGLGIIRRRRSPTAHHQPTPEGMMKLPVLAVLGAALLLSACAKKEAEACASPDVKDQLMRIFLQGAITERSPEFKDSALRDVAILEKDPDSGVLSCVGTLSVPAGQQVVEGVLQYRIAPVAKSDYDYLLLDTAGANTTALAQRLNKALGQ
Atome Classification :
(12 SA)
--------------.........10.....-----...20........30........40...--.---....50........60....----....70...---.....80...-.....-----90---..---------......--100.......110--.........120---...--....--..130.......140-------------------------.........150.------....-...160.-------.......170-..--.....180.-......-----190.......200.......210-......-..220.....---..230--......--..240.......250..------......260----..-.....270.......-280.......---290......----.300.----......310----...---...-...320.....----------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------MGR
T
V
E
D
V
D
M
L
N
H
H
F
R
-----
V
C
S
A
T
V
YRPPGDGCQSATSQP
S
A
W
W
M
AA--K---ESRSGQ
L
R
R
V
E
H
V
AFEGH
P
A
----
A
VLAGRAVE---DR
A
V
VGEADG-QAEA
D
-----
V
G
---
S
V
---------
L
R
G
V
Q
L
--
A
F
E
V
Q
L
E
H
A
RL----
D
A
F
QADG
D
V
R
-----
V
V
H
--
G
L
A
F
--
A
A
A
L
LGADGEGH
G
---------------------------
V
S
V
H
V
L
L
Q
L
A
W-G------
R
R
RQ-RGGQT-T-------GRRAG
W
P
V
L
A
-
A
V
--
G
A
A
R
G
L
G
I
I
-
R
RRRSP-----TAHHQPT
P
E
G
M
M
K
L
P
V
L
A
V
L
G
A
--
A
L
L
L
S
A
-
C
A
K
K
E
A
E
ACA---SP
D
-
V
--
K
D
Q
L
M
R
--
I
F
L
Q
G
AITERSPE-F
K
D
------
S
ALR
D
V
A
I
L----EK-DPD
S
G
V
L
S
C
V
G
TLSV-PA
G
Q
Q
V
V
E
G
V
---
L
Q
Y
RIAPVA----KSDY
D
----
Y
L
L
L
DTA------GA
N
---
T
T
A
-
L
A
Q
R
L
N
K
A
LGQ----------------------------------------------
23
Fugue
86.54
19%
-29
- C6 -
4Q3K
3
?
A:
[20-260]
--------------
Q
G
M
N
I
S
K
I
T
-
I
N
Q
H
V
G
-----
V
T
L
T
C
Y
V
Q
D
V
S
Q
E
M
S
N
M
S
K
R
P
A
M
L
I
F
P
G
--
G
---
G
Y
Q
F
C
S
D
R
E
A
E
P
I
A
L
S
Y
L
A
K
----
G
Y
-----------
N
A
F
V
L
R
Y
S
V
-
K
E
H
A
V
-----
F
P
---
R
P
---------
L
I
D
A
E
D
--
A
L
S
Y
L
K
D
N
A
H
------
A
L
H
I
N
P
D
K
I
-----
A
V
I
--
G
F
----------------
S
---------------------------
A
G
G
H
L
A
T
T
L
A
T
E
G
------
K
V
R
------
P
-
N
-------
A
V
V
L
G
Y
P
A
L
------------------
I
R
H
E
-----
K
Y
W
N
F
P
T
P
K
V
D
Q
Q
T
P
E
M
F
V
F
H
T
--
F
--------------------------
E
D
D
L
V
P
--
L
S
H
P
L
Y
I
V
E
E
L
S
K
-----------------------
A
N
-
I
P
V
E
F
H
L
F
K
S
G
V
H
G
L
-
S
L
G
N
K
I
V
S
N
G
---
L
D
K
M
I
E
--------------------
D
D
V
------
Q
V
W
---
F
D
L
-
S
C
R
W
L
D
K
V
L
D
L
----------------------------------------------
28
Fugue
83.53
18%
-39
- C2 -
3J9O
-
?
B:
[79-505]
V
I
D
K
L
I
D
L
Q
V
N
S
I
I
S
N
D
E
F
R
A
L
E
Q
E
W
L
K
V
Q
-----
E
V
C
Q
E
D
Y
D
N
V
E
V
S
I
L
D
V
K
K
E
E
L
Q
Y
D
F
E
R
--
N
L
YD
I
S
S
S
D
F
F
K
K
V
Y
V
S
E
F
D
Q
Y
G
G
E
P
Y
G
A
I
L
G
L
Y
N
F
E
NT
T
N
D
I
I
W
L
T
G
M
G
-
M
V
A
K
N
S
H
A
P
F
I
A
---
S
I
D
KSFFGVKD
L
S
E
I
T
H
IK
S
F
E
A
L
L
E
H
P
R
Y
----
K
E
W
N
D
F
R
N
L
D
-----
V
A
A
Y
I
G
L
T
V
--
G
D
F
M
L
R
Q
P
Y
N
P
E
N
NPVQYKLMEGFNE
F
V
D
Y
D
K
N
ES
Y
L
W
G
P
A
S
I
H
L
V
K
N
M
M
R
-
S
------
Y
D
K
T
-
R
W
F
Q
Y
I
R
-------
G
V
E
S
G
G
Y
V
K
N
-
L
V
--
A
C
V
Y
D
N
K
G
I
-
L
E
T
K
S
P
LNVLF
A
D
Y
M
E
L
S
L
A
N
I
G
L
I
P
F
V
S
E
K
G
T
S
N
A
C
F
F
S
V
N
S
A
K
K
V
E
E
F
V
D
---
G
F
D
-
S
--
A
N
S
R
L
I
A
N
L
S
Y
T
M
C
I
S
R
I
S
H
Y
-
I
K
C
VIRDKI
G
S
I
V
D
V
E
S
I
----
Q
K
-
I
L
S
D
W
I
S
E
F
V
T
T
V
Y
Q
-
P
T
P
L
E
M
A
R
Y
P
---
F
R
N
V
S
I
E
V
K
T
I
P
G
K
P
G
W
Y
----
S
C
K
I
N
V
I
P
HIQFE
G
M
N
---
T
T
M
T
I
D
T
R
L
E
P
E
L
F
G
TNN-------------------------------------------
22
Fugue
82.89
16%
-16
* C6 *
4V12
2
?
A:
[7-343]
--------------
D
T
S
T
L
E
S
R
--
V
G
H
Y
Y
Q
M
E
D
T
Y
L
V
G
R
E
K
V
R
E
F
A
R
A
V
Q
D
Y
H
---
P
A
H
W
N
L
A
--
T
---
A
A
D
L
G
H
P
G
L
I
A
P
L
T
F
T
S
A
P
A
----
M
A
C
N
Q
R
M
F
E
---
S
V
V
V
G
Y
D
M
Y
L
-
Q
T
E
E
V
-----
F
E
QHR
P
I
---------
V
E
G
D
E
L
--
S
I
D
I
E
L
T
S
V
R
R
I
AGR
D
L
I
T
V
T
N
T
F
T
D
TAGE
V
V
H
--
T
L
H
T
--
T
V
V
G
I
T
A
E
D
V
D
P
A
---------------------------
I
R
P
A
V
Q
G
V
M
M
H
-
G
INMLG
V
E
E
T
N
-
A
P
Y
E
K
-
T
-------
V
R
P
E
G
E
L
R
I
A
-
Q
G
--
G
A
T
R
T
P
T
S
L
-
N
F
D
D
L
K
-----
V
G
E
E
L
P
V
H
T
A
R
L
S
R
G
D
L
V
N
Y
A
G
--
V
A
G
D
A
N
-
P
L
H
W
D
E
N
I
A
K
L
A
G
Q
P
D
-
V
IA
H
G
M
L
T
M
--
G
L
G
A
G
F
V
S
S
W
S
----
G
D
------
P
G
A
I
T
R
Y
A
V
----
R
L
-
S
Q
P
A
V
V
P
---------
A
E
G
T
E
I
E
Y
S
G
---
R
I
K
S
L
D
P
E
T
----
R
T
G
V
V
----
I
V
A
A
K
S
G
------
G
R
K
---
I
F
G
-
L
A
T
A
T
I
R
F
S
------------------------------------------------
24
Fugue
73.85
16%
-30
- C4 -
4OR2
9
C562_ECOLX (first)
A:
[5-372]
----------------
D
L
E
D
N
W
E
T
L
N
D
N
L
K
-----
V
I
E
K
A
---
D
N
A
A
Q
V
K
D
A
L
T
K
M
R
A
A
A
L
D
A
--
Q
---
K
A
T
P
P
K
L
E
D
-----
K
S
P
D
S
P
----
E
M
K
D
F
R
H
G
F
---
D
I
L
V
G
Q
I
D
D
A
-
L
K
L
A
N
-----
E
G
---
K
V
---------
K
E
A
Q
A
A
--
A
E
Q
L
K
T
T
R
N
A
Y
--------
I
Q
K
Y
L
I
-----
P
V
R
--
Y
L
E
W
SN
I
E
S
I
I
A
I
A
F
S
C
L
G
---------------------------
I
L
V
T
L
F
V
T
L
I
F
-
V
------
L
Y
R
D
T
P
V
V
K
S
-
S
-------
S
R
E
L
C
Y
I
I
L
A
-
G
I
F
L
G
Y
V
C
P
F
T
L
I
-
A
K
--------------
P
T
T
T
S
C
Y
L
Q
R
L
L
V
G
L
S
S
--
A
M
C
Y
S
A
-
L
V
T
K
T
N
R
I
A
R
---
I
L
A
-
R
--
K
P
R
F
M
S
--
A
W
A
Q
V
I
I
A
S
I
L
I
S
-
V
Q
L
------
T
L
V
V
T
L
I
I
M
----
E
P
P
M
P
I
L
S
Y
P
S
I
K
E
V
Y
L
I
C
N
T
S
N
L
G
V
V
A
P
---
L
G
Y
N
G
L
L
I
M
----
S
C
T
Y
Y
----
A
F
K
T
R
N
V
------
P
A
N
FN
E
A
K
Y
-
I
A
F
T
M
Y
T
T
C
I
I
W
L
A
F
V
P
I
Y
F
G
S
NY
K
I
I
T
T
C
F
A
V
S
L
S
V
T
V
A
L
G
CMF
T
P
K
M
Y
I
I
IAKPE
19
Fugue
72.69
12%
-52
- C6 -
2WTM
3
?
A:
[2-251]
--------------------
G
A
M
Y
I
D
C
D
G
I
-----
K
L
N
A
Y
L
D
M
P
K
N
----
N
P
E
K
C
P
L
C
I
I
I
H
G
FT
G
---
H
S
E
E
R
H
I
V
A
V
Q
E
T
L
N
E
I
G
V
A
----
T
L
R
A
--------
D
M
Y
G
H
G
K
S
D
G
K
F
E
D
H
T
-----
L
F
---
K
W
---------
L
T
N
I
L
A
--
V
V
D
Y
A
K
K
L
D
F
---------
V
T
D
I
Y
M
-----
A
G
H
--
S
Q
G
G
--
L
S
V
M
L
A
A
A
M
E
R
D
I
---------------------------
I
K
A
L
I
P
L
S
P
A
A
-
M
------
I
P
E
I
-
A
R
T
G
E
-
L
-------
L
G
-------------------------------------
L
K
F
D
P
E
N
I
P
D
---
E
L
D
A
W
D
--
G
R
K
L
K
----
G
N
Y
V
R
V
A
Q
---
T
I
R
-
V
--
E
D
F
V
D
K
--
Y
T
------------------------
K
P
V
L
I
V
----
H
G
-
D
Q
D
E
A
V
-------
P
Y
-
E
A
S
V
A
F
S
K
Q
Y
---
K
N
C
K
L
V
T
I
P
----
G
D
T
H
------
C
Y
D
H
H
L
------
E
L
V
---
T
E
A
-
V
K
E
F
M
L
E
Q
I
A
K
----------------------------------------------
21
Fugue
72.59
14%
-35
- C1 -
3SYA
7
?
A:
[6-333]
--------------
I
Q
R
Y
V
---------
R
K
-----
D
G
K
C
N
V
H
H
G
N
V
R
E
T
Y
R
Y
L
T
D
I
F
T
T
L
V
D
L
--
K
---
W
R
F
N
L
L
I
F
V
M
V
Y
T
V
T
W
L
F
F
G
----
M
I
W
W
L
I
A
Y
I
---
R
G
D
M
D
H
I
E
D
P
-
S
W
T
P
C
-----
V
T
---
N
L
----------
N
G
F
V
S
--
A
F
L
F
S
I
E
T
E
T
T
----
I
G
Y
G
Y
R
V
I
T
D
-----
K
C
P
--
E
G
I
I
--
L
L
L
I
Q
S
V
L
G
S
I
V
N
---------------------------
A
F
M
V
G
C
M
F
V
K
I
-
S
------
Q
P
K
K
-
R
A
E
T
L
-
V
FST
H
A
V
I
S
M
R
D
G
K
L
C
L
M
F
R
V
--
G
D
L
R
N
S
H
I
V
E
A
S
I
R
A
K
-----
L
I
K
S
K
Q
T
S
E
G
----
E
F
I
P
L
N
Q
T
--
D
I
N
V
G
Y
-
Y
T
G
D
D
R
L
F
L
V
---
S
P
-----
L
I
I
S
H
E
--
I
N
Q
Q
S
P
F
W
E
I
S
K
A
Q
L
P
K
------
E
E
L
E
I
V
V
I
L
----
E
G
-
M
V
E
A
T
G
M
T
C
Q
A
R
S
S
Y
-
I
T
S
E
I
L
W
G
Y
R
F
T
P
V
L
T
L
E
D
G
F
Y
----
E
V
D
Y
N
SFH
E
T
Y
E
T
S
T
P
------
S
L
S
---
A
K
E
-
L
A
E
L
A
N
R
A
E
S
N
----------------------------------------------
26
Fugue
68.34
15%
-49
* C7 *
4YMU
2
?
C:
[1-214]
---------------------------------------------------------------------------------------------------
M
T
V
---
D
F
L
S
M
V
K
Y
T
P
-
L
F
I
S
G
-----
L
I
---
M
T
---------
L
K
L
T
F
L
--
A
V
T
I
G
V
L
M
G
L
F
----
I
A
L
M
K
M
S
S
I
K
-----
P
I
K
--
L
V
A
S
--
S
Y
I
E
V
I
R
-----
G
---------------------------
T
P
L
L
V
Q
L
L
L
I
Y
-
N
------
G
L
M
Q
-
F
G
M
N
I
-
P
-------
A
F
T
A
G
V
S
A
L
A
-
I
N
--
S
S
A
Y
V
A
E
I
I
-
R
A
G
I
-----------
Q
A
V
D
P
G
Q
N
E
A
A
R
S
L
G
M
T
H
--
A
M
A
M
R
Y
-
V
I
I
P
Q
A
I
K
N
I
---
L
P
A
-
L
--
G
N
E
F
I
V
--
M
L
K
E
S
A
I
V
S
V
I
--------------------------------------
G
F
A
D
L
-
T
R
Q
A
D
I
I
Q
S
V
---
T
Y
R
Y
F
E
P
Y
I
----
I
I
A
A
I
----
Y
F
V
M
T
L
T
------
F
S
K
---
L
L
S
-
L
F
E
R
R
L
---------------------------------------------------
27
Fugue
65.86
14%
-24
- C7 -
1P4D
8
TRAI1_ECOLI
A:
[1-307]
-----------------------------------
M
M
S
I
A
Q
V
R
S
A
G
S
A
G
N
Y
Y
T
D
K
D
N
-
Y
Y
V
L
G
--
S
---
M
G
E
R
W
A
G
R
G
A
E
Q
L
G
L
Q
G
S
V
D
----
K
D
V
F
T
R
L
L
E
---
G
R
L
P
D
G
A
D
L
S
-
R
M
Q
D
G
-----
S
N
---
R
H
---------
R
P
G
Y
D
L
--
T
F
S
A
P
K
S
V
S
M
M
----
A
M
L
G
G
D
K
R
L
I
-----
D
A
H
--
N
Q
A
V
--
D
F
A
V
R
Q
V
E
A
L
----------------------------------------
A
-
S
------
T
R
V
M
-
T
D
G
Q
S
-
E
-------
T
V
L
T
G
N
L
V
M
A
-
L
F
--
N
H
D
T
------
S
R
D
Q
E
P
-----
Q
L
H
T
H
A
V
V
A
N
V
T
Q
H
-------------------
N
G
E
W
K
T
L
S
---
S
D
K
-
V
--
G
K
T
G
F
I
--
E
N
V
Y
A
N
Q
I
A
F
G
R
L
-
Y
R
E
------
K
L
K
E
Q
V
E
A
L
G
Y
E
T
E
V
-
V
G
K
H
G
M
W
E
M
P
G
------
V
P
V
E
A
F
S
V
D
---
P
E
I
K
M
A
E
W
M
----
Q
T
L
K
E
----
T
G
F
D
I
R
A
------
Y
R
D
---
A
A
D
-
Q
R
A
D
L
R
T
L
T
P
G
----------------------------------------------
20
Fugue
59.20
11%
-59
- C5 -
1MKM
2
?
A:
[4-249]
---------------------------------------------------
M
N
T
L
K
K
A
F
E
I
L
D
--
F
---
I
V
K
N
P
G
D
V
S
V
S
E
I
A
E
K
F
N
M
S
----
V
S
N
A
Y
K
Y
M
V
---
V
L
E
E
K
G
--------------------
F
V
---------
L
R
K
K
D
K
--
R
Y
V
P
G
Y
K
L
I
E
Y
----
G
S
F
V
L
R
R
F
N
I
-----
R
D
I
--
A
H
D
H
--
L
V
D
I
M
K
R
T
G
E
T
--------------------------------------------------------------------------
V
H
L
-
I
L
--
K
D
G
F
E
G
V
Y
I
-
D
K
V
E
G
E
-----
Q
S
I
P
M
V
S
R
L
G
M
-
K
V
D
L
Y
S
T
A
S
G
--
K
S
I
L
A
F
-
V
P
E
K
E
L
K
E
Y
L
---
K
I
V
-
E
--
L
K
P
K
T
P
--
N
T
I
T
N
-
P
R
V
L
K
R
E
-
L
E
K
------
I
R
K
R
G
Y
A
V
D
----
N
E
-
E
N
E
I
G
I
M
C
V
G
V
P
I
F
D
-
H
N
G
Y
P
V
A
G
V
S
---
I
S
G
V
---------
A
R
K
F
T
----
E
E
K
I
E
E
Y
------
S
D
V
---
L
K
E
-
K
A
E
E
I
S
R
K
L
G
Y
----------------------------------------------
1
PsiBlast_PDB
25.83
37%
43
- C3 -
1A8Q
-
CPOA1_STRAU
A:
[112-159]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
S
--
A
V
L
L
S
A
-
I
P
P
V
M
I
K
S
D
K
---
N
P
D
G
V
--
P
D
E
V
F
D
--
A
L
K
N
G
V
L
T
E
R
S
Q
F
-
W
K
D
------
T
A
E
G
F
F
S
A
N
----
R
P
-
G
N
K
V
T
Q
G
N
K
D
A
F
W
Y
M
-
A
M
A
Q
T
I
E
G
G
V
---
R
C
V
D
A
F
G
Y
T
----
D
F
T
E
D
----
L
K
K
F
D
I
P
------
T
L
V
---
V
H
G
-
D
D
D
Q
V
V
P
I
D
A
T
----------------------------------------------
6
HHSearch
18.52
20%
225
* C8 *
3TLK
-
FEPB_ECOLI
A:
[105-124]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
S
A
E
A
V
A
----
A
Q
M
P
D
----
L
I
L
I
S
A
T
-------------------------------------------------------------------------
18
HHSearch
8.33
0%
701
- C8 -
3C9H
1
?
A:
[85-96]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
T
A
D
F
A
F
S
S
A
M
-----------------------------------------------------------------------------------------------------------------------