@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA1985: (2016-02-03 )
MWTKPSFTDLRLGFEVTLYFANR
Atome Classification :
(20 SA)
----------------------------------------------------------------.........10..--------.--.....20..----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------MWTKPSF
T
D
L
R
L
G
--------
F
--
E
V
T
L
Y
FANR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
86.38
30%
-131
- C9 -
4PO6
4
TYK2_HUMAN
A:
[6-546]
G
G
L
K
V
L
L
HWAGPGGGEP
W
V
T
F
SESSLT
A
E
E
V
C
I
H
I
A
H
K
V
GITPPCFNL
F
A
L
F
DAQAQ
V
W
L
P
PN
H
I
L
E
I
P
R
D
A
S
L
M
L
Y
--------
F
--
R
I
R
F
Y
F
R
N
W
HGMNPR
E
P
A
V
Y
R
CGPPGQGMQLLD
P
A
S
F
E
Y
L
F
E
Q
G
K
H
E
F
V
N
DVASLWELST
E
E
E
I
H
H
F
K
N
E
S
L
G
M
A
F
L
H
L
C
H
L
A
L
R
H
GIP
L
E
E
V
A
K
K
T
S
F
K
D
C
I
P
R
S
F
R
R
H
I
R
Q
H
S
A
L
T
R
L
R
L
R
N
V
F
R
R
F
L
R
D
FQPGRLS
Q
Q
M
V
M
V
K
Y
L
A
T
L
E
R
L
A
P
RFG
T
E
R
V
P
V
C
H
L
R
L
L
A
QAEGEPCYIRDAGPPT
H
E
V
L
V
T
GTG
G
I
Q
W
W
P
VE
P
L
W
A
Y
F
CDFRDIT
H
V
V
L
K
EH
C
V
S
I
H
R
QDNKCL
E
L
S
L
PS
R
A
A
A
L
S
F
V
S
L
V
D
G
Y
F
R
L
T
ADSSHYLCHEVAP
P
R
L
V
M
S
I
R
D
GIHGPLL
E
P
F
V
Q
A
K
L
RPEDG
L
Y
L
I
H
W
S
TSHPY
R
L
I
L
T
V
A
Q
R
S
Q
A
PDG
M
Q
S
L
R
L
R
K
F
P
I
E
QAFVLEGWGRSFPS
V
R
E
L
G
A
A
L
QG
C
L
L
R
A
GD
D
C
F
S
LR
R
C
C
L
PQPGETSNL
I
I
M
R
G
19
Fugue
79.78
30%
-144
* C12 *
2X4J
-
?
A:
[16-136]
---------------FFTNKIG
C
N
V
S
S
PLKHVD
I
V
G
E
I
VEEAVY
N
F
L
I
D
AGDKMCVGNKI
G
V
W
K
V
S
R
K
S
L
Y
A
K
V
P
K
G
--------
I
--
G
V
T
V
Y
L
A
N
G
R
V
Q
G
RLIDIGVY
E
V
L
V
E
E
VG
D
I
I
Y
I
H
KDLVY
A
L
C
W
P
K---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
74.51
30%
-88
- C14 -
1Q90
1
PETL_CHLRE
L:
[1-32]
----------------------------------------------------------------
M
L
T
I
T
S
Y
V
G
L
L
I
G
ALV-----
F
--
T
L
G
I
Y
L
G
L
L
KVVKLI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
55.75
20%
-52
- C10 -
2OQJ
-
?
F:
[1-20]
----------------------------------------------------------------
A
C
P
P
S
H
V
L
D
M
R
S
G
--------
T
--
C
L
A
---
A
E
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
55.50
45%
-174
- C3 -
2VQE
-
RS12_THET8
L:
[63-73]
----------------------------------------------------------------------------
G
--------
Y
--
E
V
T
A
Y
I
P
G
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
53.66
46%
-89
- C15 -
3LOT
4
?
A:
[256-268]
------------------------------------------------------------------------
D
V
R
V
G
--------
L
--
E
D
S
L
Y
I
E
R
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
53.15
26%
-45
- C12 -
2CCI
1
CDC6_HUMAN
F:
[1-30]
----------------------------------------------------------------
H
H
A
S
P
R
K
H
T
L
K
-------------
G
R
R
L
V
F
D
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
52.74
13%
-40
- C8 -
1T0C
-
?
A:
[1-31]
----------------------------------------------------------------
E
A
E
D
L
Q
V
G
Q
V
E
L
G
GGPGAGSL
Q
--
P
L
A
L
E
G
S
L
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
51.45
25%
-128
- C4 -
1N3J
-
?
A:
[92-103]
----------------------------------------------------------------------
I
K
P
I
A
I
G
--------
E
--
E
I
T
I
S
Y
G
D
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
46.55
21%
-57
- C11 -
1D0D
-
TAP_ORNMO
A:
[9-29]
--------------------------------------------------------------------
R
D
W
I
D
E
C
D
S
--------
N
EG
G
E
R
A
Y
F
R
N
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
46.50
38%
-87
* C15 *
3C6C
3
?
A:
[263-275]
------------------------------------------------------------------------
N
V
R
V
G
--------
L
--
E
D
N
L
Y
L
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
45.35
29%
-112
* C13 *
2Z14
-
EFHC2_HUMAN
A:
[86-99]
----------------------------------------------------------------------
V
Y
H
F
N
V
G
--------
T
--
E
V
V
F
Y
G
R
T
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
44.17
20%
-179
- C6 -
2GPI
-
?
A:
[29-38]
----------------------------------------------------------------------------
G
--------
M
--
V
I
D
C
Y
I
G
Q
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
43.18
15%
-88
- C13 -
1H3I
-
SETD7_HUMAN
A:
[270-282]
---------------------------------------------------------------------
T
L
R
A
V
E
A
D
--------
E
--
E
L
T
V
A
Y
G
Y
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
42.96
36%
-107
- C1 -
3E49
1
?
A:
[254-264]
-------------------------------------------------------------------------
V
R
V
G
--------
L
--
E
D
S
L
W
I
A
P
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
35.00
25%
-61
* C14 *
1PQ1
-
B:
[96-107]
--------------------------------------------------------------------------
R
I
G
--------
D
--
E
F
N
E
T
Y
T
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
34.21
42%
-65
- C2 -
2WH6
-
B:
[14-22]
--------------------------------------------------------------------------
R
I
G
--------
D
--
E
F
N
A
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
33.43
25%
-95
- C14 -
2KWZ
-
A:
[15-26]
--------------------------------------------------------------------------
E
L
I
--------
F
--
T
I
T
K
I
L
L
A
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
30.06
25%
-18
- C15 -
3NO5
1
?
A:
[224-235]
------------------------------------------------------------------------
H
C
R
T
G
--------
L
--
E
D
N
V
R
L
D
K
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
29.87
30%
-84
- C5 -
3TNU
-
K2C5_HUMAN
B:
[462-471]
--------------------------------------------------------------------------
A
L
D
--------
V
--
E
I
A
T
Y
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------