@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA2021: (2016-02-03 )
MSIEIDSEQGVCSVEIEGSRHRAPVDSLRIGTDAEARLSVLYIDGKRLHISEEDAQRLVVAGAEDQRRHLMADD
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........-.10----...-...-..20.....---..------.30...-.-.-.--..40..----...---...50........60..-....--..70....-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
S
I
E
IDSE-Q
G
V
----
C
S
V
-
E
IE-GSRHRAPVD---
S
L
------RIGTD
A
-
E
-
A
-
R
--
L
S
V
L
Y
I----DG
K
---
R
L
HI
S
E
E
DA
Q
R
L
V
VAGA-ED
Q
R
--
R
HL-MADD-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
99.26
100%
-130
- C4 -
1YWY
-
?
A:
[23-96]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
I
E
I
D
S
E
-
Q
G
V
----
C
S
V
-
E
I
E
-
G
S
R
H
R
A
P
V
D
---
S
L
------
R
I
G
T
D
A
-
E
-
A
-
R
--
L
S
V
L
Y
I
----
D
G
K
---
R
L
H
I
S
E
E
D
A
Q
R
L
V
V
A
G
A
-
E
D
Q
R
--
R
H
L
-
M
A
D
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
99.26
100%
-130
- C4 -
1YWY
-
?
A:
[23-96]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
I
E
I
D
S
E
-
Q
G
V
----
C
S
V
-
E
I
E
-
G
S
R
H
R
A
P
V
D
---
S
L
------
R
I
G
T
D
A
-
E
-
A
-
R
--
L
S
V
L
Y
I
----
D
G
K
---
R
L
H
I
S
E
E
D
A
Q
R
L
V
V
A
G
A
-
E
D
Q
R
--
R
H
L
-
M
A
D
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
99.26
100%
-130
- C4 -
1YWY
-
?
A:
[23-96]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
I
E
I
D
S
E
-
Q
G
V
----
C
S
V
-
E
I
E
-
G
S
R
H
R
A
P
V
D
---
S
L
------
R
I
G
T
D
A
-
E
-
A
-
R
--
L
S
V
L
Y
I
----
D
G
K
---
R
L
H
I
S
E
E
D
A
Q
R
L
V
V
A
G
A
-
E
D
Q
R
--
R
H
L
-
M
A
D
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
44.87
21%
-103
- C4 -
3HRS
-
?
A:
[173-211]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
V
G
K
---
T
I
------
R
F
L
G
Y
D
-
D
-
F
S
H
--
L
Y
S
L
E
V
----
D
G
Q
---
E
I
Q
L
A
Q
P
I
A
Q
Q
I
Y
V
E
K
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
43.95
18%
-100
- C4 -
3E19
1
?
A:
[36-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
G
A
---
T
I
------
Q
V
L
E
S
----
M
-
G
--
P
I
I
I
S
V
----
G
G
V
---
R
F
A
I
G
K
G
L
A
G
R
V
M
V
R
K
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
40.73
17%
-88
* C4 *
3K8R
2
?
A:
[24-108]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPRA
A
K
A
R
Y
D
R
S
-
S
A
R
----
V
I
V
-
D
L
E
N
G
C
T
F
A
F
P
P
R
LAQ
G
L
------
E
G
A
S
D
D
-
Q
-
L
-
C
--
A
V
E
I
L
G
----
Q
G
Y
---
G
L
H
W
E
T
L
D
-
V
D
L
S
L
P
G
L
M
A
G
I
F
GT
K
A
W
M
A
K
R
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
39.92
14%
-119
- C4 -
2K5I
-
?
A:
[109-151]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
G
K
---
K
I
------
Q
V
S
G
R
R
-----------
Y
Y
I
----
E
G
R
---
E
I
D
L
G
Y
G
E
A
T
K
I
W
V
R
R
V
-
S
D
A
G
--
E
E
S
-
H
P
Q
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
38.73
24%
-35
- C4 -
4AV9
3
HSV2_KLULA
A:
[14-338]
SNPIV
D
Y
E
F
N
QDQS
C
L
I
V
S
T
PK
S
F
D
I
Y
NVHPLKRI
M
S
Q
E
M
P
DAGT
I
R
M
L
HRTN
Y
I
A
F
V
S
TKKELLHIWDDVKKQDI
T
R
V
K
L
DAAVK
D
L
F
L
S
RE
F
I
V
V
S
Q
GD
V
I
S
I
F
K
FGNPWNKITEDIKFGG
V
C
E
F
A
NG
L
L
V
Y
S
N
EFNLG
Q
I
H
V
T
R
L
Q
TDAEQVVGK
G
V
L
V
KAHANPVK
M
V
R
L
N
RKGD
M
V
A
T
C
S
QDGT
L
I
R
V
F
Q
T
D
-
N
G
V
----
L
V
R
-
E
F
R
-
R
G
L
D
R
T
S
I
I
---
D
M
------
R
W
S
P
D
--
G
-
S
-
K
--
L
A
V
V
S
-----
D
K
W
---
T
L
H
V
F
E
-------
V
F
N
D
-
A
E
N
K
--
R
H
V
-
L
K
D
W
INSEWSICNFK
L
K
V
S
KGSN
D
C
K
I
A
W
ISDT
G
L
V
I
V
W
PNRR
L
A
D
T
F
K
L
N
Y
NDDEH
V
W
W
L
Q
L
N
Q
R
N
E
IP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
38.58
12%
-62
- C5 -
2E29
-
A:
[1-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSSGSSGFE
P
R
S
L
I
T
S
D
-
K
G
F
----
V
T
M
-
T
L
E
-
S
L
E
E
I
Q
D
V
S
---
C
A
W
K
E
L
N
R
K
L
S
S
N
A
-
V
-
S
-
Q
--
I
T
R
M
C
L
L
KGN
M
G
V
---
C
F
D
V
P
T
T
E
S
E
R
L
Q
A
E
W
H
-
D
S
D
W
--
I
L
S
-
V
P
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
38.41
14%
-69
- C4 -
2QQ9
-
DTXR_CORDI
A:
[188-223]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
G
S
---
E
V
------
E
I
V
D
R
---------
H
I
T
L
S
H
----
N
G
K
---
D
V
E
L
L
D
D
L
A
H
T
I
R
I
E
E
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
38.41
19%
-77
- C4 -
3MHX
7
?
A:
[36-84]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
V
K
G
E
---
E
V
------
R
M
V
A
K
G
-
P
-
V
-
G
GE
P
L
L
V
Q
V
----
G
F
T
---
R
F
A
L
R
I
S
E
A
K
R
V
V
V
D
A
A
-
S
Q
E
R
--
R
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
33.25
17%
-69
- C4 -
2K4Y
-
?
A:
[36-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
R
G
T
---
E
I
------
Y
I
E
G
K
A
P
M
-
G
-
D
--
P
I
A
L
R
L
----
R
G
Y
---
S
L
S
L
R
K
S
E
A
K
D
I
L
V
E
V
L
-
L
E
H
H
--
H
H
H
-
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
32.12
13%
-32
- C4 -
2K5F
-
?
A:
[32-79]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
R
G
A
---
K
L
------
K
V
L
R
F
A
-
P
L
G
-
D
--
P
I
E
V
N
C
----
N
G
M
---
L
L
T
M
R
R
N
E
A
E
G
I
T
V
H
I
L
-
A
G
D
E
--
G
H
P
-
H
G
W
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
29.79
17%
-71
- C4 -
2LX9
-
FEOA_ECOLI
A:
[31-79]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
P
G
S
---
S
F
------
N
V
V
R
V
A
P
L
-
G
-
D
--
P
I
H
I
E
T
----
R
R
V
---
S
L
V
L
R
K
K
D
L
A
L
L
E
V
E
A
V
-
S
S
L
E
--
H
H
H
-
H
H
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
28.87
15%
-54
- C2 -
3E8V
1
?
A:
[1-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
K
G
S
V
L
V
T
D
A
-
E
G
Q
P
V
A
D
A
T
V
-
E
F
K
-
V
Y
N
Y
A
E
F
Y
T
---
V
A
------
T
K
H
T
D
R
-
S
-
G
-
H
--
A
S
L
T
A
G
----
K
G
D
M
L
V
W
A
S
K
D
G
R
F
G
Y
S
K
L
S
F
G
--
K
D
N
E
--
L
K
I
-
T
L
D
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
27.11
13%
-91
- C4 -
1FX7
2
IDER_MYCTU
A:
[190-227]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
N
A
---
R
V
------
T
V
E
T
T
P
-
G
-
G
-
G
--
V
T
I
V
I
P
----
G
H
E
---
N
V
T
L
P
H
E
M
A
H
A
V
K
V
E
K
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
24.69
23%
-21
- C4 -
3EB8
-
VIRA_SHIFL
A:
[53-399]
------------------------------------------------------------------------------------------------------------------------------------------------------------A
E
K
H
S
E
K
K
L
M
D
S
F
S
P
S
LSQDKMDGEF
A
H
A
N
I
DG
I
S
I
R
L
C
L
N
-
K
G
I
----
C
S
V
F
Y
L
D
-
G
D
K
I
Q
S
T
Q
L
---
S
---------
S
K
E
Y
-
N
-
N
-
L
--
L
S
S
L
P
------
P
K
---
Q
F
N
L
G
K
V
H
T
I
T
A
P
V
S
G
---
N
F
K
--
T
H
K
-
P
A
P
E
V
I
E
T
A
I
N
C
C
T
S
I
I
PNDDYFHVKDTDFNS
V
W
H
D
I
Y
R
D
I
R
A
SDSNS
T
K
I
Y
F
NNIEIP
L
K
L
I
A
D
L
I
N
E
L
GINEFIDSK
K
E
L
Q
M
L
S
Y
N
Q
V
N
K
I
I
N
S
N
F
PQQD
L
C
F
Q
T
E
K
L
L
F
T
S
L
F
Q
D
P
A
F
I
S
A
L
T
S
A
F
WQSLHITS
S
S
V
E
H
I
Y
A
Q
I
M
S
E
N
I
E
N
R
L
N
FMPE
Q
R
V
I
NNC
G
H
I
I
K
I
N
A
VR
A
Y
E
V
S
S
S
I
L
P
S
HITCN
G
V
G
I
N
K
I
E
T
S
Y
L
V
H
AGTLPS
S
E
G
L
R
N
A
I
PPES
R
Q
V
S
F
A
I
I
S
P
D
11
HHSearch
20.72
18%
-38
- C4 -
2H3J
-
?
A:
[32-71]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
P
G
A
---
A
L
------
R
V
V
R
I
A
P
L
-
G
-
D
--
P
I
Q
V
E
T
----
R
Q
T
---
S
L
A
L
R
R
K
D
L
A
L
L
T
L
V
P
L
-
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
17.83
12%
-44
* C5 *
2JDA
7
?
A:
[7-145]
------------------------------------------------------------------------------------------------------------------------------------------------------TAQIV
A
V
T
A
SGYDSEKGHV
P
A
N
I
A
DGDVK
T
R
W
A
A
S
G
E
S
W
V
Q
L
E
L
D
K
E
-
Q
S
I
----
E
N
I
-
L
I
V
-
P
F
K
P
T
E
R
K
L
---
K
F
------
S
I
F
Y
S
N
-
D
-
G
-
K
--
N
W
Q
P
L
A
----
E
G
L
---
E
T
S
S
A
D
K
N
G
E
K
L
T
F
T
P
V
-
T
A
K
Y
--
I
K
L
-
D
T
F
G
TDVNN
W
S
A
I
N
E
I
A
I
NSAAALPSRAIK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
17.68
14%
3
- C1 -
2RHK
3
CPSF4_HUMAN
C:
[7-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
H
S
H
M
S
G
E
K
T
V
V
----
C
K
H
-
W
L
R
-
G
L
C
K
K
-----------------
G
D
Q
C
-
E
-
F
-
L
--
H
E
Y
-------
D
M
T
---
K
M
S
E
C
Y
F
Y
S
K
F
G
E
C
S
N
K
-
E
C
P
F
--
L
H
I
-
D
P
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------