@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA2030: (2016-02-03 )
MIRCRNCGERPASEGHICMVCKRRSDIDPYKALIAMALLVYCGVSLAAYLKPHMPAPPPTAGSSVQPAEELAQRARQATLEQRGI
Atome Classification :
(20 SA)
----------------------------------------.........10-..--------------------.----.------.....20........30.....----...40---.........50..--......60........70........80....---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------MIRCRNCGER--PA--------------------S----E------GHICMVCKRRSDIDPYKALIAM----ALLV----YCGVSLAAYLKPH--MPAPPPTAGSSVQPAEELAQRARQATLEQRGI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
55.51
18%
-91
- C3 -
4XHJ
7
GH_VZVO
A:
[36-791]
-A
L
L
R
E
Y
S
D
R
N
MS
L
K
L
E
A
F
Y
P
T
GFDEELIKSLHWGNDRK
H
V
F
L
V
I
V
K
V
N
P
--
T
T
--------------------
H
----
E
------
G
D
V
G
L
V
I
F
P
K
Y
L
L
S
P
Y
R
F
G
F
L
S
----
H
P
V
T
P
D
VS
F
F
D
S
S
F
A
P
Y
L
T
T
Q
--
H
L
V
A
F
T
T
F
P
P
N
--
P
L
V
W
H
L
E
R
A
E
T
A
A
T
A
E
R
P
F
G
V
S
L
L
PARPTVPKN
T
I
L
E
H
K
A
H
F
ATWDALA
R
H
T
F
F
S
AEAIIT
N
S
T
L
R
I
H
V
P
L
FGSV
W
P
I
R
Y
W
A
T
G
S
V
L
L
T
S
DS
G
R
V
E
V
N
I
G
VG
F
M
S
S
L
I
S
L
SS
G
L
P
I
E
L
I
V
V
PHT
V
K
L
N
A
V
T
SDTTWF
Q
L
N
P
P
GPDPGPS
Y
R
V
Y
L
L
G
RGLDMNFSKHA
T
V
D
I
C
A
YPEESLD
Y
R
Y
H
L
S
M
A
H
T
E
A
L
R
M
T
T
K
ADQHDIN
E
E
S
Y
Y
H
I
A
A
R
I
A
T
S
I
F
A
L
S
E
M
G
R
T
T
EYFL
L
D
E
I
V
D
V
Q
Y
Q
L
K
F
L
N
Y
I
L
M
R
IGAGAHPNT
I
S
G
T
S
D
L
IFAD
P
S
Q
L
H
D
E
L
S
L
L
F
G
QFIS
Y
D
E
A
R
D
Q
L
K
T
A
Y
A
L
SRGQDH
V
N
A
L
S
L
A
R
R
V
I
M
S
I
Y
K
G
L
L
V
K
QNLN
A
T
E
R
Q
A
L
F
F
A
S
M
I
L
L
NFS
S
R
V
L
D
G
R
T
T
L
L
L
M
T
S
M
CT
A
A
H
A
T
Q
A
A
L
N
I
Q
E
G
L
A
Y
LNPSK
H
M
F
T
IPNVYSPCMGSLRTDLTE
E
I
H
V
M
N
L
L
S
A
IPTR
P
G
L
N
E
V
L
H
T
QLD
E
S
E
I
F
D
A
A
F
K
T
M
M
I
F
T
T
WTAKD
L
H
I
L
H
T
HVPEVFTCQDAAARNGEYV
L
I
L
P
A
VQG
H
S
Y
V
I
T
RNKPQR
G
L
V
Y
S
LADVDVY
N
P
I
S
V
V
Y
L
S
KDTC
V
S
E
H
G
V
I
E
T
V
A
L
P
HPDNLKECLYCG
S
V
F
L
R
Y
L
TTGAIMDIIIIDS
K
D
T
E
R
Q
L
A
AMGNSTIPPFNPDMHGDD
S
K
A
V
L
L
F
PNG
T
V
V
T
L
L
G
37
Fugue
54.59
25%
-59
- C7 -
4D2I
2
?
A:
[1-476]
MII
G
Y
V
I
G
QATTQ
E
A
L
I
L
A
E
R
P
V
R
L
G
T
Y
V
V
L
E
Y
DNVK
A
L
G
L
I
T
N
V
T
R
G
S
P
--
L
L
--------------------
D
----
D
------
N
--------
M
N
D
I
E
I
V
Q
R
L
K
Q
F
NNS
I
P
V
Y
T
----
K
A
K
V
K
L
L
C
D
M
N
N
H
FL
M
P
D
I
P
P
F
A
G
T
---
P
A
R
E
A
E
D
E
E
L
K
S
I
Y
S
Q
D
G
Q
IRIGSLIGKN
V
E
V
K
L
N
INSFAR
H
L
A
I
L
A
A
TGSG
K
S
N
T
V
A
V
L
S
Q
R
I
S
E
L
G
G
S
V
L
I
FDYHGEYYDSDIKN
L
N
R
I
E
PKLNPLYMT
P
R
E
F
S
T
L
L
EIRENA
I
I
Q
Y
R
I
L
R
R
A
F
I
K
V
T
N
G
I
R
A
A
L
A
A
GQIPFST
L
N
S
Q
F
Y
E
L
M
A
D
A
LK
D
E
V
L
N
K
F
E
E
F
M
D
R
Y
SNVIDLTSSDIIEKVKRGKV
N
V
V
S
LTQLD
E
D
S
M
D
A
V
V
S
H
Y
L
R
R
I
L
D
S
R
K
D
F
K
R
SKNSGLK
F
P
I
I
A
V
I
E
E
A
H
V
F
L
SKNENT
L
T
K
Y
W
A
S
R
I
A
R
EGRKFG
V
G
L
T
I
V
S
QRPKGLD
E
N
I
L
S
Q
MTNKIILKIIE
P
T
D
K
K
Y
I
L
E
S
S
DNLS
E
D
L
A
E
Q
L
SSLDVG
E
A
I
I
I
G
KIVKLPAVVKIDMFE
G
K
L
L
G
SDPDMIG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
46.38
21%
-60
- C8 -
3O9X
1
MQSA_ECOLI
A:
[2-45]
----------------------------------------
H
M
K
C
P
V
C
H
Q
G
--
E
M
V
S
G
I
K
D
I
P
Y
T
F
RG
R
K
T
V
LKG
I
----
H
------
G
L
Y
C
V
H
C
E
E
S
I
M
N
K
E
E
S
D
A
F
M
A
----
Q
V
K
A
----
F
R
A
S
V
N
A
E
T
V
A
P
E
--
F
I
V
K
V
R
K
K
L
S
L
T
Q
K
E
A
S
E
I
F
G
G
G
V
N
A
F
S
R
Y
E
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
45.51
37%
-73
- C2 -
1P1P
-
?
?:
[1-25]
--------------------------------------------
G
C
C
G
S
Y
--
P
N
--------------------
A
----
A
------
C
H
P
C
S
-
C
K
D
R
S
Y
C
G
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
43.20
13%
-38
- C6 -
2KON
-
?
A:
[1-82]
--------------------------------------M
N
V
A
H
Y
R
G
Y
E
I
E
--
P
-----------------------------------------
G
H
Q
Y
R
D
D
I
R
K
Y
V
P
Y
----
A
L
I
R
----
K
V
G
V
P
D
R
T
P
I
P
T
T
--
Y
P
E
F
Y
D
L
E
A
D
A
E
R
V
S
I
A
C
A
K
I
I
I
D
S
H
L
D
R
H
D
Q
GLADLG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
43.14
21%
-39
- C7 -
2G2K
-
IF5_HUMAN
A:
[98-149]
------------------------------------------
L
C
P
E
C
E
N
P
--
E
T
--------------------
D
L
H
V
-
N
PKKQ
T
I
G
N
S
C
K
A
C
G
Y
R
G
M
L
D
T
H
---------------------
H
K
L
C
T
F
I
L
K
N
--
P
P
E
N
S
D
S
G
T
G
K
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
41.98
28%
-54
- C8 -
3EH1
1
A:
[86-121]
-----------------------------------------
V
R
C
R
S
C
R
T
Y
--
I
N
PFVSFID-------------
Q
----
R
------
R
W
K
C
N
L
C
Y
R
V
N
D
V
P
E
E
F
M
E
P
H
K
----
R
P
E
V
----
Q
N
S
T
V
E
F
I
A
S
S
D
Y
--
M
L
R
P
P
Q
P
A
V
Y
L
F
V
L
D
V
S
H
N
A
V
E
A
G
Y
L
T
I
L
C
Q
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
41.42
35%
-54
- C8 -
3VRH
1
?
A:
[270-292]
-----------------------------------------
K
E
C
K
I
C
R
M
P
------------------------
S
----
S
------
G
D
I
C
A
F
C
K
F
W
G
L
K
K
E
I
N
F
K
V
S
S
----
T
D
E
E
----
P
F
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
41.10
25%
-47
- C8 -
3EH2
1
SC24C_HUMAN
A:
[95-130]
-----------------------------------------
L
R
C
N
R
C
K
A
Y
--
M
C
PF
M
Q
F
I
EG------------
G
----
R
------
R
F
Q
C
C
F
C
S
C
I
N
D
V
P
P
Q
Y
F
Q
H
L
D
----
H
T
G
K
----
R
V
D
A
Y
D
R
P
E
L
S
L
G
--
S
Y
E
F
L
A
T
V
D
Y
C
K
N
N
K
F
P
S
P
P
A
F
I
F
M
I
D
V
S
Y
N
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
40.58
30%
-185
- C1 -
2KU7
-
PPIE_HUMAN
A:
[2-11]
----------------------------------------
M
M
Q
C
G
K
C
D
R
W
--
V
H
--------------------
S
----
K
------
C
E
N
L
S
D
E
M
Y
E
I
L
S
N
L
P
E
S
V
A
Y
T
----
C
V
N
C
----
T
E
R
H
V
D
G
G
S
G
G
S
G
--
G
S
G
G
S
A
T
T
K
R
V
L
Y
V
G
G
L
A
E
E
V
D
D
K
V
L
H
A
A
F
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
40.27
25%
-50
- C8 -
1PCX
2
SEC24_YEAST
A:
[113-148]
-----------------------------------------
V
R
C
R
R
C
R
S
Y
--
M
N
PF
V
T
F
I
EQ------------
G
----
R
------
R
W
R
C
N
F
C
R
L
A
N
D
V
P
M
Q
M
D
Q
P
K
S
----
R
Y
D
R
----
N
E
I
K
C
A
V
M
E
Y
M
A
P
--
K
E
Y
T
L
R
Q
P
P
P
A
T
Y
C
F
L
I
D
V
S
Q
S
S
I
K
S
G
L
L
A
T
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
35.63
17%
-24
- C4 -
2K4F
-
A:
[1-57]
----------------------------------------
C
S
K
N
R
K
A
K
A
K
--
P
V
--------------------
T
----
R
------
G
------------------------------------
T
G
A
G
S
R
P
R
G
Q
--
N
K
E
R
P
P
P
V
P
N
P
D
Y
E
P
I
R
K
G
Q
R
D
L
Y
S
G
L
N
Q
R
A
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
35.05
35%
-9
- C8 -
1LKO
1
RUBY_DESVH
A:
[156-180]
-----------------------------------------
W
R
C
R
N
C
G
Y
V
H
E
G
T
--------------------
G
----
A
------
P
E
L
C
P
A
C
A
H
P
K
A
H
F
E
L
L
G
I
N
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
34.99
19%
-66
- C8 -
2F9I
1
ACCD_STAAC
B:
[31-67]
-----------------------------------------
T
K
C
P
K
C
K
K
I
--
M
Y
--------------------
T
----
K
E
L
A
E
N
-
L
N
V
C
F
N
C
D
H
H
I
A
L
T
A
Y
K
R
I
E
A
I
----
S
D
E
G
----
S
F
T
E
F
D
K
G
M
T
S
A
N
--
P
L
D
F
P
S
Y
L
E
K
I
E
K
D
Q
Q
K
T
G
L
K
E
A
V
V
T
G
T
A
Q
L
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
33.66
29%
-66
- C8 -
2APO
1
NOP10_METJA
B:
[7-27]
-----------------------------------------
K
K
C
P
K
C
G
L
Y
--
T
--------------------------
L
------
K
E
I
C
P
K
C
G
E
K
T
V
I
P
K
P
P
K
F
S
L
E
----
D
R
W
G
----
K
Y
R
R
M
L
K
R
A
L
K
N
K
--
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
33.40
25%
-72
- C8 -
1VDD
1
RECR_DEIRA
A:
[55-74]
-----------------------------------------
H
V
C
P
I
C
F
N
----
I
--------------------
T
----
D
------
A
E
K
C
D
V
C
A
D
P
S
R
D
Q
R
T
I
C
V
V
E
E
----
P
G
D
V
----
I
A
L
E
R
S
G
E
Y
R
G
L
Y
--
H
V
L
H
G
V
L
S
P
M
N
G
V
G
P
D
K
L
H
I
K
P
L
L
P
R
V
G
Q
G
M
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
33.14
47%
-108
- C5 -
2GAG
1
?
D:
[4-18]
-----------------------------------------
I
D
C
P
N
C
G
P
R
--
N
E
--------------------
N
----
E
------
F
K
Y
G
G
E
A
H
V
A
Y
P
A
D
P
H
A
L
S
D
K
Q
----
W
S
R
Y
----
L
F
Y
R
Q
N
K
K
G
I
F
A
E
--
R
W
V
H
A
A
G
C
R
K
W
F
N
A
L
R
D
T
V
T
Y
E
F
K
A
I
Y
P
A
G
A
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
32.73
31%
0
- C7 -
1CQT
2
OBF1_HUMAN
I:
[16-37]
-----------------------------------------------------------------------------------------------------------------------------------------
A
R
P
Y
Q
G
V
R
V
K
E
P
V
K
E
L
L
R
R
K
R
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
31.39
30%
-10
- C8 -
1VQ8
-
RL37A_HALMA
Z:
[29-62]
------------------------------------------
A
C
P
N
C
G
E
D
--
R
V
D
R
QG----------------
T
----
G
------
I
W
Q
C
S
Y
C
D
Y
K
F
T
G
G
S
Y
K
P
E
T
P
G
----
G
K
T
V
----
R
R
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
30.96
8%
-72
* C8 *
2JNY
-
?
A:
[11-40]
-----------------------------------------
L
A
C
P
K
D
K
G
P
--
L
R
--------------------
Y
LESE
Q
------
L
L
V
N
E
R
L
N
L
A
Y
R
I
D
D
G
I
P
V
L
L
I
----
D
E
A
T
----
E
W
T
P
N
N
L
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------