@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA2704: (2016-02-10 )
MIDSTFSRATWLNSLHMSTLTLSLLEKEGFAREQLLEGSGITPADLLDLRRLISPWQEQQVFANACRLSDEPALGLRLGLRTRISAYGLLGYALLSAPTLGEALRIGLSYPVLLGTYFHLSLEVADGRAWLVATGYGEDEALRPFNTELCLGSLKVTCADLLGQPLPLLEAAFDYAGDEAMARAYAEGFACELHFERERSAIGFAAEWLERPLPLADPVTHREMLEQCRRQNIDLAARRAWLDKVRAILAERLQDPPGLEELARRLNCSSRSLRRHLQQQRTSYQQLLDELRFARAKELLQSGDMPIYRIAEELGFSETASLRHAFQRWSGQPPSHFRA
Atome Classification :
(20 SA)
----------------------.........10........20........30........40..------------.......50........60.-----.......70....-----....80........90.......---------.100.......----110.......------120.......130.......140.......150.......160.......-----170.......180.......190..--.....200.......210.---......220.......230.....-..240.......250-----...-......-------260.......270.....--..-280-....-....290.....---..300--....--...310.......320......-----.330.......-------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------MIDSTF
S
R
A
T
W
L
N
S
L
H
M
S
T
L
T
L
S
L
L
E
KEG
F
A
R
E
Q
LLEGSG-I
T
------------
P
A
D
L
L
D
L
R
R
LIS
P
W
Q
E
Q
Q
V
F
-----
A
N
A
CRLSDEPA
L
G
-----
L
R
LG
L
R
T
R
I
S
A
Y
G
L
L
G
Y
A
L
LSAP---------T
L
G
E
A
L
R
IGLS----Y
P
V
L
L
G
T
Y
F
H
------
L
S
L
E
VADG
R
A
W
L
V
A
TGYGEDEALRPF
N
T
E
L
C
L
G
S
L
K
V
T
C
A
D
LLGQ
P
L
P
L
L
-----
E
A
A
F
DYAG
D
E
A
M
A
R
A
Y
AEG
F
A
C
E
L
H
--
F
ERERSAI
G
F
A
A
E
W
L
ERPL---PLADPV
T
H
R
E
M
L
E
Q
C
R
RQNI
D
L
A
A
-
R
R
A
W
L
D
K
V
R
A
I
L
A
-------
E
RL-QDPP
G
L
-------
E
E
L
A
R
RLNCS
S
R
S
L
R
R
H
L
--
Q
Q
-
Q
-
R
-
T
S
Y
Q
-
Q
L
L
D
E
L
R
F
A
R
A
K
---
E
L
L
Q
S--GD
M
P
--
I
Y
R
I
A
E
E
LGFS
E
T
A
S
L
R
H
A
F
Q
R-----WSGQPPSHFRA-------------
17
HHSearch
67.10
20%
-79
- C3 -
3MN2
2
?
A:
[3-104]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
R
Q
V
E
E
Y
I
E
-------
A
N
W
-
M
R
P
I
T
I
-------
E
K
L
T
A
L
T
G
I
S
S
R
G
I
F
K
A
F
--
Q
R
-
S
R
G
-
Y
S
P
M
-
A
F
A
K
R
V
R
L
Q
H
A
H
---
N
L
L
S
D
GA
T
P
T
T
--
V
T
A
A
A
L
S
C
G
F
S
N
L
G
H
F
A
R
D
Y
R
D
-----
M
F
G
E
K
P
S
E
T
L
Q
-------------
19
HHSearch
67.03
30%
-79
- C3 -
3W6V
2
?
A:
[37-138]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
P
L
A
E
V
V
A
W
A
L
-------
E
H
L
-
H
E
Q
F
D
V
-------
E
T
L
A
A
R
A
Y
M
S
R
R
T
F
D
R
R
F
--
R
S
-
L
T
G
-
S
A
P
L
-
Q
W
L
I
T
Q
R
V
L
Q
A
Q
---
R
L
L
E
T
--
S
D
Y
S
--
V
D
E
V
A
G
R
C
G
F
R
S
P
V
A
L
R
G
H
F
R
R
-----
Q
L
G
S
S
P
A
A
Y
R
A
-------------
22
HHSearch
66.79
25%
-88
- C3 -
3OIO
2
?
A:
[6-107]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
P
K
L
T
E
A
V
S
L
M
E
-------
A
N
I
-
E
E
P
L
S
T
-------
D
D
I
A
Y
Y
V
G
V
S
R
R
Q
L
E
R
L
F
--
K
Q
-
Y
L
G
-
T
V
P
S
-
K
Y
Y
L
E
L
R
L
N
R
A
R
---
Q
L
L
Q
Q
--
T
S
K
S
--
I
V
Q
I
G
L
A
C
G
F
S
S
G
P
H
F
S
S
T
Y
R
N
-----
H
F
N
I
T
P
R
E
E
R
A
-------------
7
PsiBlast_PDB
66.42
24%
-85
- C3 -
3OIO
2
?
A:
[3-107]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
-
S
Q
P
K
L
T
E
A
V
S
L
M
E
-------
A
N
I
-
E
E
P
L
S
T
-------
D
D
I
A
Y
Y
V
G
V
S
R
R
Q
L
E
R
L
F
--
K
Q
-
Y
L
G
-
T
V
P
S
-
K
Y
Y
L
E
L
R
L
N
R
A
R
---
Q
L
L
Q
Q
--
T
S
K
S
--
I
V
Q
I
G
L
A
C
G
F
S
S
G
P
H
F
S
S
T
Y
R
N
-----
H
F
N
I
T
P
R
E
E
R
A
-------------
41
Fugue
65.24
17%
-33
- C2 -
4UPC
-
NICA_HUMAN
A:
[42-655]
IPLNKTAPCVCQSSIS
G
D
T
G
V
I
H
V
V
E
K
E
E
D
L
Q
W
V
L
T
D
G
P
N
P
P
Y
M
V
L
L
E
S
K
H
F
T
R
D
L
M
E
K
L
K
G
-
R
T
SRIAA
V
S
L
T
KPS
P
A
S
G
F
S
P
N
G
L
A
Y
E
D
F
S
F
P
I
F
------
L
L
E
D
E
N
E
T
K
V
I
N
-----
L
S
Q
N
G
S
C
A
M
Q
L
F
S
H
M
T
A
T
C
M
R
R
S
---------
S
I
Q
S
T
F
S
I
V
C
D
P
L
S
D
Y
N
V
W
S
M
L
N
V
V
------
V
A
A
T
R
L
D
S
R
S
F
F
W
N
V
A
P
G
A
E
S
A
V
A
S
F
V
T
Q
L
A
A
A
E
A
L
Q
K
A
P
D
V
T
T
L
P
R
N
V
M
F
V
FFQ
G
E
T
F
D
Y
I
G
S
S
R
M
V
Y
D
M
E
K
G
P
V
S
Q
K
N
ES
V
R
L
E
K
S
G
A
G
V
P
A
V
I
L
R
R
P
N
---
Q
S
Q
P
L
P
P
R
A
R
N
I
S
G
V
V
L
A
D
H
S
G
A
F
-
H
N
K
Y
Y
Q
S
I
Y
D
T
A
E
NINVSYP
E
W
L
-
S
P
E
E
D
L
NFVTDTA
K
A
L
A
D
V
A
T
V
L
G
R
A
L
Y
E
D
T
--
V
Q
-
A
-
D
-
P
Q
T
V
-
T
L
L
Y
G
F
L
I
K
P
L
Q
HYI
A
V
V
Q
Y
--
A
L
A
N
--
L
T
G
T
V
V
N
L
C
V
R
S
T
A
R
L
A
R
A
W
S
S
TE
Y
S
T
W
T
E
S
R
W
K
D
I
R
A
R
IFL---------
23
HHSearch
64.61
24%
-80
- C3 -
3LSG
1
?
A:
[3-103]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
E
L
I
Q
N
I
I
E
-------
E
S
Y
T
D
S
Q
F
T
L
-------
S
V
L
S
E
K
L
D
L
S
S
G
Y
L
S
I
M
F
--
K
K
N
F
-
G
-
I
P
F
Q
-
D
Y
L
L
Q
K
R
M
E
K
A
K
---
L
L
L
L
T
--
T
E
L
K
--
N
Y
E
I
A
E
Q
V
G
F
E
D
V
N
Y
F
I
T
K
F
K
K
-----
Y
Y
Q
I
T
P
K
Q
Y
R
E
-------------
6
PsiBlast_PDB
64.47
30%
-76
- C3 -
3W6V
2
?
A:
[40-133]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
E
V
V
A
W
A
L
-------
E
H
L
-
H
E
Q
F
D
V
-------
E
T
L
A
A
R
A
Y
M
S
R
R
T
F
D
R
R
F
--
R
S
-
L
-
T
-
G
S
A
P
L
Q
W
L
I
T
Q
R
V
L
Q
A
Q
---
R
L
L
E
T
--
S
D
Y
S
--
V
D
E
V
A
G
R
C
G
F
R
S
P
V
A
L
R
G
H
F
R
R
-----
Q
L
G
S
S
P
------------------
20
HHSearch
63.77
24%
-87
- C3 -
2K9S
-
A:
[5-104]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
E
A
C
Q
Y
I
S
-------
D
H
L
A
D
S
N
F
D
I
-------
A
S
V
A
Q
H
V
C
L
S
P
S
R
L
S
H
L
F
--
R
Q
-
Q
L
G
-
I
S
V
L
-
S
W
R
E
D
Q
R
I
S
Q
A
K
---
L
L
L
S
T
--
T
R
M
P
--
I
A
T
V
G
R
N
V
G
F
D
D
Q
L
Y
F
S
R
V
F
K
K
-----
C
T
G
A
S
P
S
E
F
R
A
-------------
39
Fugue
63.15
13%
-66
- C3 -
4FE7
1
XYLR_ECOLI
A:
[21-409]
------------MFT
K
R
H
R
I
T
L
L
F
N
A
N
K
A
Y
D
R
Q
V
V
E
G
V
G
E
Y
L
Q
A
S
Q
S
E
W
D
I
F
I
E
E
F
R
W
L
G
D
G
V
I
A
------------
D
F
D
D
K
Q
I
E
Q
A
L
A
D
V
D
V
P
I
V
G
V
G
G
S
Y
H
L
A
E
S
Y
P
P
V
H
Y
I
A
T
D
N
Y
A
L
V
E
S
A
F
L
H
L
K
E
K
G
V
N
R
F
A
F
Y
G
L
P
ESSGK
R
W
A
T
E
R
E
Y
A
F
R
Q
L
V
A
----
E
E
K
Y
R
G
V
V
Y
Q
G
LETAP
E
N
W
Q
H
A
Q
N
R
L
A
D
W
L
Q
T
L
P
P
Q
T
G
I
I
A
V
T
D
A
R
A
R
H
I
L
Q
V
C
E
H
L
H
I
P
V
P
E
K
L
C
-----
V
I
G
I
D
---
N
E
E
L
T
R
Y
L
S
R
V
A
L
S
S
V
A
--
Q
G
A
R
Q
M
G
Y
Q
-
A
A
K
L
L
H
R
L
L
D
K
E
E
M
P
L
Q
R
I
L
V
P
P
V
R
V
I
E
R
R
S
T
D
Y
R
S
L
T
D
P
A
V
I
Q
A
M
H
Y
I
R
-------
N
H
A
-
C
K
G
I
K
V
-------
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
--
K
E
-
E
-
V
G
E
T
I
H
-
A
M
I
H
A
E
K
L
E
K
A
R
---
S
L
L
I
S
--
T
T
L
S
--
I
N
E
I
S
Q
M
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
-----
A
Y
D
T
T
P
K
E
Y
R
D
V
N
SE---------
38
Fugue
62.82
21%
-64
* C3 *
1BL0
2
MARA_ECOLI
A:
[9-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
I
T
I
H
S
I
L
D
W
I
E
-------
D
N
L
-
E
S
P
L
S
L
-------
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
--
K
K
-
E
T
G
-
H
S
L
G
-
Q
Y
I
R
S
R
K
M
T
E
I
A
---
Q
K
L
K
E
--
S
N
E
P
--
I
L
Y
L
A
E
R
Y
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
-----
Y
F
D
V
P
P
H
K
Y
R
M
TNMQGESRFLHPL
5
PsiBlast_PDB
62.50
24%
-55
- C3 -
1XS9
2
MARA_ECOLI
A:
[8-113]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
N
T
D
A
I
T
-
I
H
S
I
L
D
W
I
----
E
-------
D
N
L
-
E
S
P
L
S
L
-------
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
--
K
K
-
E
-
T
G
H
S
L
G
-
Q
Y
I
R
S
R
K
M
T
E
I
A
---
Q
K
L
K
E
--
S
N
E
P
--
I
L
Y
L
A
E
R
Y
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
-----
Y
F
D
V
P
P
H
K
Y
R
--------------
21
HHSearch
62.30
20%
-78
- C3 -
3OOU
1
?
A:
[4-105]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
I
I
Q
N
V
L
S
Y
I
T
-------
E
H
F
-
S
E
G
M
S
L
-------
K
T
L
G
N
D
F
H
I
N
A
V
Y
L
G
Q
L
F
--
Q
K
-
E
M
G
-
E
H
F
T
-
D
Y
L
N
R
Y
R
V
N
Y
A
K
---
E
E
L
L
Q
--
T
K
D
N
--
L
T
I
I
A
G
K
S
G
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
-----
H
T
G
E
T
P
N
R
Y
R
K
-------------
36
Fugue
61.52
10%
-48
- C3 -
3GBG
1
TCPN_VIBC3
A:
[4-273]
---------------KKS
F
Q
T
N
V
Y
R
M
S
K
F
D
T
Y
I
F
N
N
L
Y
I
N
D
Y
K
M
F
W
I
D
S
G
---
I
A
K
L
I
D
K
N
C
-
L
V
------------
S
Y
E
I
N
-
S
S
S
I
I
L
L
---------------------
K
K
N
S
-----
I
Q
R
F
S
L
T
S
-
L
S
D
E
N
I
N
V
S
V
I
T
I
S
---------
D
S
F
I
R
S
L
K
S
Y
I
----
L
G
-------------------------------
N
K
D
L
L
L
W
N
C
E
-----
H
N
D
I
A
V
L
S
E
V
V
N
G
F
R
E
I
N
-----
Y
---------------------------
S
D
E
F
L
K
V
F
F
S
G
F
F
S
K
V
E
K
---
K
Y
N
S
I
F
I
T
D
D
----------------
L
D
A
M
E
K
I
S
C
L
V
K
-------
S
D
I
-
T
R
N
W
R
W
-------
A
D
I
C
G
E
L
R
T
N
R
M
I
L
K
K
E
L
--
E
S
-
R
-
G
-
V
K
F
R
-
E
L
I
N
S
I
R
I
S
Y
S
I
---
S
L
M
K
T
--
G
E
F
K
--
I
K
Q
I
A
Y
Q
S
G
F
A
S
V
S
Y
F
S
T
V
F
K
S
-----
T
M
N
V
A
P
S
E
Y
L
F
M
L
T
GV--------
35
Fugue
60.99
20%
-74
- C3 -
3MN2
2
?
A:
[1-108]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
A
V
R
Q
V
E
E
Y
I
E
-------
A
N
W
M
R
-
P
I
T
I
-------
E
K
L
T
A
L
T
G
I
S
S
R
G
I
F
K
A
F
--
Q
R
-
S
-
R
-
G
Y
S
P
M
A
F
A
K
R
V
R
L
Q
H
A
H
---
N
L
L
S
D
--
G
A
T
P
TT
V
T
A
A
A
L
S
C
G
F
S
N
L
G
H
F
A
R
D
Y
R
D
M
----
F
G
E
K
P
S
E
T
L
Q
R
A
RP----------
4
PsiBlast_PDB
60.85
24%
-49
- C3 -
1BL0
2
MARA_ECOLI
A:
[9-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
I
T
-
I
H
S
I
L
D
W
I
----
E
-------
D
N
L
-
E
S
P
L
S
L
-------
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
--
K
K
-
E
-
T
G
H
S
L
G
-
Q
Y
I
R
S
R
K
M
T
E
I
A
---
Q
K
L
K
E
--
S
N
E
P
--
I
L
Y
L
A
E
R
Y
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
-----
Y
F
D
V
P
P
H
K
Y
R
--------------
24
HHSearch
60.71
20%
-66
- C3 -
1D5Y
2
ROB_ECOLI
A:
[5-107]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
D
L
L
I
W
L
E
-------
G
H
L
-
D
Q
P
L
S
L
-------
D
N
V
A
A
K
A
G
Y
S
K
W
H
L
Q
R
M
F
--
K
D
-
V
T
G
-
H
A
I
G
-
A
Y
I
R
A
R
R
L
S
K
S
A
---
V
A
L
R
L
--
T
A
R
P
--
I
L
D
I
A
L
Q
Y
R
F
D
S
Q
Q
T
F
T
R
A
F
K
K
-----
Q
F
A
Q
T
P
A
L
Y
R
R
-------------
16
HHSearch
60.46
22%
-67
- C3 -
1BL0
2
MARA_ECOLI
A:
[9-111]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
I
T
I
H
S
I
L
D
W
I
E
-------
D
N
L
-
E
S
P
L
S
L
-------
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
--
K
K
-
E
T
G
-
H
S
L
G
-
Q
Y
I
R
S
R
K
M
T
E
I
A
---
Q
K
L
K
E
--
S
N
E
P
--
I
L
Y
L
A
E
R
Y
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
-----
Y
F
D
V
P
P
H
K
Y
R
M
-------------
15
HHSearch
59.00
16%
-73
- C3 -
3GBG
1
TCPN_VIBC3
A:
[167-268]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
D
A
M
E
K
I
S
C
L
V
K
-------
S
D
I
-
T
R
N
W
R
W
-------
A
D
I
C
G
E
L
R
T
N
R
M
I
L
K
K
E
L
--
E
S
-
R
-
G
-
V
K
F
R
-
E
L
I
N
S
I
R
I
S
Y
S
I
---
S
L
M
K
T
--
G
E
F
K
--
I
K
Q
I
A
Y
Q
S
G
F
A
S
V
S
Y
F
S
T
V
F
K
S
-----
T
M
N
V
A
P
S
E
Y
L
F
-------------
1
PsiBlast_PDB
55.63
33%
-36
- C3 -
2K9S
-
A:
[31-104]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
L
S
P
S
R
L
S
H
L
F
R
Q
Q
-
L
-
G
-
I
S
V
L
-
S
W
R
E
D
Q
R
I
S
Q
A
K
---
L
L
L
S
T
--
T
R
M
P
--
I
A
T
V
G
R
N
V
G
F
D
D
Q
L
Y
F
S
R
V
F
K
K
-----
C
T
G
A
S
P
S
E
F
R
A
-------------
37
Fugue
50.71
24%
-34
- C3 -
1BL0
2
MARA_ECOLI
A:
[63-124]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
K
M
T
E
I
A
---
Q
K
L
K
E
--
S
N
E
P
--
I
L
Y
L
A
E
R
Y
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
-----
Y
F
D
V
P
P
H
K
Y
R
M
TNMQGESRFLHPL