@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA2800: (2016-02-11 )
MRARGVNWIERSARILACASLALAPTLSLAASEEDPWESINRPIFTFNDTLDTYALKPLAQGYQKVTPNFVQDGVHNFFNNLGDVKNLANNLLQAKFHNAGVDTSRLLFNSTFGLAGLIDVATPMGLQRNDEDFGQTLGYWGVGSGPYVMLPFLGPSTLRDAPAKIPDIYVSPYHYMDDVRARNVMFGINTVDTRANLLKSEKLISGDKYIFIRNAYLQNREFKVKDGEVEDDF
Atome Classification :
(20 SA)
---.........10.....----...20.---------...---....30........40.-.......50....--...---.60.-----------------.....----..70.....---...80.------------......-------.90-----..--.----.----.....100-........110---......--..120---...-......130.......140-----------.....----...150------------..--------....-------.160....-----...170-.......------180.......190--------...---..----..200--.....---....210.......220....---...230--...-------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---MRARG
V
N
W
I
E
R
S
A
R
I
L
----
A
C
A
S
L
A---------LAP---
T
L
SLAASEED
P
W
E
SINR-
P
I
F
T
FNDT
L
D
T
Y
A
--
L
K
P
---
L
A
Q
G
-----------------
Y
Q
KV
T
----
P
N
F
V
Q
D
G
V
H
---
N
F
F
N
NL------------
G
D
V
K
N
L
-------
A
N
------
N
L
--
L
----
Q
----
A
K
FHNAG--V
D
T
S
R
L
LFNS----TFGLA
G
--
L
I
D-----VAT-PMGLQRN
D
E
D
F
G
Q
T
LGYW------------GVGSG----
P
Y
V
M
L
P------------FL--------G
P
S
T
-------LRDAPAKI-----P
D
I
YVS-
P
Y
H
Y
M
D
D
------
V
RAR
N
V
M
F
GIN
T
V
--------
D
T
R
---
A
N
----
L
L
K
----
S
EKLI---SGD
K
Y
I
F
I
R
N
A
Y
LQNR
E
F
K
VK---DGEVE---DDF-------------------------------------------------------------------------------------------------------------------
29
Fugue
92.84
16%
-47
- C8 -
4WBX
-
?
C:
[12-390]
RFP
F
P
V
G
E
P
D
F
I
Q
G
D
E
A
I
A
----
R
A
A
I
L
A
GCRFYAGYP
I
T
P
---
A
S
E
I
F
E
A
M
A
L
Y
M
P
L
V
D
G
-
V
V
I
Q
M
E
D
E
I
A
S
I
A
A-
A
I
G
---
A
S
W
A
-----------------
G
A
K
A
M
----
T
A
T
S
G
P
G
F
S
---
L
M
Q
E
N
I
------------
G
Y
A
V
M
T
-------
E
T
------
P
V
--
V
----
I
----
V
D
V
Q
R
S
G
--
L
P
A
Q
G
D
I
M
Q
A
----
I
W
G
T
H
G
DH
S
L
I
-----
V
L
S
-
P
S
T
V
Q
E
A
F
D
F
T
I
R
A
F
N
L
S
------------
E
K
Y
R
T
----
P
V
I
L
L
T
DAEVGHMRERVY
I
P
--------
N
P
D
E
IEIINRL
I
K
R
I
V
E
K
I
EKNK-
K
D
I
F
T
Y
-
E
T
Y
E
L
E
D
AVATGI
V
A
R
S
A
L
L
L
K
I
E
T
I
WPFDFELI
E
R
I
---
A
E
----
R
V
D
----
K
L
Y
V
P
EMN
L
G
Q
L
Y
H
L
I
K
E
G
A
N
G
K
A
E
V
K
L
I
SKI
G
G
E
V
H
---
T
P
M
EIFEFI-------------------------------------------------------------------------------------------------------------
24
Fugue
84.47
21%
-35
- C6 -
3P4G
16
?
A:
[23-323]
HSF
D
H
Y
I
G
S
A
F
D
A
S
N
N
N
V
A
V
TGN
V
S
A
T
L
N
---------
V
L
A
GD
D
K
V
S
I
D
G
N
V
E
D
V
L
V
A
A
N
V
-
A
V
L
D
M
G
T
G
N
D
Q
L
Y
--
V
A
G
---
D
V
L
G
K
I
D
AGTGN
D
E
I
Y
I
K
G
D
V
S
A
A
V
D
----
A
G
T
G
N
D
E
V
Y
I
GG
N
L
S
G
D
L
DAGT
D
N
D
N
I
Q
I
G
G
D
V
N
A
A
-------
L
N
AGTGN
D
N
L
--
I
I
G
H
D
V
----
S
G
I
V
N
M
G
--
T
D
N
D
T
V
E
V
G
R
----
T
I
N
A
S
G
--
K
V
L
-----
L
D
T
G
D
D
S
L
L
V
S
G
D
L
F
G
E
V
D
G
--------------
G
T
G
N
D
----
T
I
I
I
A
G
------------
K
V
S
G
N
I
Q
GGT
G
N
D
I
-------
V
R
V
Q
S
Q
V
W
-----
A
E
A
N
I
S
-
L
G
T
G
D
D
V
------
L
I
V
E
H
E
L
H
G
--
T
V
--------
A
G
N
---
E
G
D
D
S
I
Y
L
K
----
F
Y
T
K
E
---
Q
Y
N
N
N
S
D
L
R
N
R
V
A
N
F
E
H
I
R
V
S
---
D
G
V
V
K
GSP
A
D
F
ADY----------------------------------------------------------------------------------------------------------------
27
Fugue
73.76
11%
-24
* C8 *
1YVE
4
ILV5_SPIOL
I:
[237-524]
-LE
Q
E
Y
K
S
D
I
F
G
E
R
G
I
L
L
G
----
A
V
H
G
I
V
---------
E
C
L
---
F
R
R
Y
T
E
S
G
M
S
E
D
L
A
Y
K
N
-
T
V
E
C
I
T
G
V
I
S
K
T
I
--
S
T
------
K
G
-----------------
M
L
A
L
Y
----
N
S
L
S
E
E
G
K
K
---
D
F
Q
A
A
Y
------------
S
A
S
Y
Y
P
-------
S
M
------
D
I
--
L
----
Y
----
E
C
Y
E
D
V
A
SG
S
E
I
R
S
V
V
L
A
G
----
R
R
F
Y
E
K
--
E
G
L
-----
P
A
F
-
P
M
G
K
I
D
Q
T
R
M
W
K
V
G
E
K
V
R
SVRPAGDLGPLY
P
F
T
A
G
----
V
Y
V
A
L
M
------------
M
A
--------
Q
I
E
I
-------
L
R
K
K
G
H
S
Y
-----
S
E
I
I
N
E
S
V
I
E
A
V
D
S
------
L
N
P
F
M
H
A
R
G
V
S
F
M
--------
V
D
N
---
C
S
------
T
----
T
A
R
L
G
---
S
R
K
W
A
P
R
F
D
Y
I
L
S
Q
Q
A
L
V
A
V
D
---
N
G
A
P
I
---
N
Q
D
LISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQA-------------------------------------------------------------------------
20
Fugue
68.58
11%
30
* C7 *
1RKE
-
VINC_HUMAN
A:
[-3-258]
--
H
M
P
V
F
H
T
R
T
I
E
S
I
L
E
P
V
----
A
Q
Q
I
S
H
---------
L
V
I
---
M
H
E
E
G
E
V
D
G
K
A
I
P
D
L
T
A
-
P
V
A
A
V
Q
A
A
V
S
N
L
V
--
R
V
G
K
E
T
V
Q
T
T
-----------------
E
D
Q
I
L
----
K
R
D
M
P
P
A
F
I
---
K
V
E
N
A
C
------------
T
K
L
V
Q
A
-------
A
Q
------
M
L
--
Q
----
S
DPYS
V
P
A
R
D
Y
L
--
I
D
G
S
R
G
I
L
S
G
----
T
S
D
L
L
L
--
T
F
D
-----
E
A
E
-
V
R
K
I
I
R
V
C
K
G
I
L
E
Y
L
T
V
A
------------
E
V
V
E
T
----
M
E
D
L
V
T
------------
Y
T
----------
K
N
-------
L
G
P
G
M
T
K
M
-----
A
K
M
I
D
E
-
R
Q
Q
E
L
T
H
------
Q
E
H
R
V
M
L
-----
V
--------
N
S
M
---
N
T
----
V
K
E
----
L
L
P
V
L
---
I
S
A
M
K
I
F
V
T
T
K
N
S
K
N
Q
G
I
E
E
A
---
L
K
N
R
N
---
F
T
V
E
K
M
S
A
E
I
N
E
I
I
R
V
L
Q
LTSWDEDAW-------------------------------------------------------------------------------------------
22
Fugue
66.30
11%
-38
- C7 -
1G4W
-
SPTP_SALTY
R:
[171-539]
---
L
L
D
I
A
L
K
G
L
K
R
T
L
P
Q
L
----
E
----------------------
Q
M
D
G
N
S
L
R
P
L
R
S
L
M
T
-
N
L
Q
N
L
N
K
Q
L
N
D
Y
V
TT
L
T
N
---
I
Q
V
G
-----------------
V
A
R
F
S
QWEV
E
R
W
V
D
A
S
T
H
---
E
L
T
Q
A
V
------------
K
K
I
H
V
I
-------
A
K
------
E
L
KN
V
----
T
----
A
E
L
E
K
I
P
--
Q
T
M
S
G
P
T
L
G
L
----
A
R
F
A
V
S
--
S
I
P
-----
I
N
Q
-
Q
T
Q
V
K
L
S
D
G
M
P
V
P
V
N
T
L
T
------------
F
D
G
K
P
----
V
A
L
A
G
S
------------------------------------
Y
P
K
N
T
-----
P
D
A
L
E
A
-
H
M
K
M
L
L
E
------
K
E
C
S
C
L
V
V
L
T
S
E
D
--------
Q
M
Q
---
A
K
----
Q
L
P
PYF-
R
G
S
Y
T
---
F
G
E
V
H
T
N
S
Q
K
V
S
S
A
S
Q
G
E
A
I
D
---
Q
Y
N
M
Q
---
L
S
C
GEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRDSRNNRMLEDASQFVQLKAMQAQLLM
21
Fugue
64.77
10%
-56
- C5 -
2AN1
-
NADK_SALTY
A:
[4-292]
----
H
F
K
C
I
G
I
V
G
H
T
T
H
E
M
----
L
Y
R
W
L
C
D
Q
G------
Y
E
V
---
I
V
E
Q
Q
I
A
H
E
L
Q
L
K
N
V
P
T
G
T
L
A
E
I
G
Q
Q
A
D
L
A
V
--
V
V
G
---
G
D
G
N
-----------------
M
L
G
A
A
----
R
T
L
A
R
Y
D
I
N
---
V
I
G
I
N
R
------------
G
N
L
G
F
L
TDLDPDN
A
L
------
Q
Q
--
L
----
S
----
D
V
L
E
G
R
Y
--
I
S
E
K
R
F
L
L
E
A
----
Q
V
C
Q
Q
R
--
I
S
T
-----
A
I
N
-
E
V
V
L
H
P
G
K
V
A
H
M
I
E
F
E
V
Y
I
DETFA
F
S
----
Q
R
S
D
G
----
L
I
I
S
T
P
------------
T
G
--------
S
T
A
Y
-------
S
L
S
A
G
G
P
I
L
T
PSL
D
A
I
T
L
V
-
P
M
F
P
H
T
L
------
S
A
R
P
L
V
I
N
S
S
S
T
I
--------
R
L
R
F
S
H
D
L
----
E
I
S
C
DSQ
I
A
L
P
I
---
Q
E
G
E
D
V
L
I
R
R
C
D
Y
H
L
N
L
I
H
P
K
---
D
Y
S
Y
F
---
N
T
L
S
T
K
L
GWSKKLF--------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
56.16
23%
-19
* C9 *
2Y8N
-
HPDL_CLOSL
A:
[180-267]
------------------------------------------------------
P
W
E
G
I
---------------
S
--
V
E
E
---
L
S
N
K
-----------------
Y
S
K
M
T
----
P
G
Y
D
Q
---------------------------
F
K
N
I
-------
M
E
------
S
V
--
I
---------
C
M
F
D
S
F
A
--
I
P
Q
G
R
E
V
I
N
Y
Y
M
P
L
Q
Y
G
F
D
G
--
I
I
K
L
C
D
E
K
I
A
E
-
V
M
G
E
A
G
D
D
G
D
F
G
M
S
R
G
Y
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_CBE
56.12
43%
42
- C12 -
4QN5
2
?
B:
[213-249]
-----------------------------------------------------
D
N
W
N
G
M
N
R
-
P
I
L
I
F
D
E
D
L
D
-
Y
E
--
V
G
Y
---
L
C
A
G
-----------------
I
P
T
D
T
----
P
R
-
V
Q
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
55.99
43%
43
- C12 -
4QN5
2
?
A:
[213-249]
-----------------------------------------------------
D
N
W
N
G
M
N
R
-
P
I
L
I
F
D
E
D
L
D
-
Y
E
--
V
G
Y
---
L
C
A
G
-----------------
I
P
T
D
T
----
P
R
-
V
Q
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
54.63
43%
44
- C12 -
3SAN
3
?
A:
[213-249]
-----------------------------------------------------
D
N
W
N
G
M
N
R
-
P
I
L
I
F
D
E
D
L
D
-
Y
E
--
V
G
Y
---
L
C
A
G
-----------------
I
P
T
D
T
----
P
R
-
V
Q
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_CBE
54.61
43%
40
* C12 *
3SAL
2
?
B:
[213-249]
-----------------------------------------------------
D
N
W
N
G
M
N
R
-
P
I
L
I
F
D
E
D
L
D
-
Y
E
--
V
G
Y
---
L
C
A
G
-----------------
I
P
T
D
T
----
P
R
-
V
Q
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
54.60
43%
44
- C12 -
3SAL
2
?
A:
[213-249]
-----------------------------------------------------
D
N
W
N
G
M
N
R
-
P
I
L
I
F
D
E
D
L
D
-
Y
E
--
V
G
Y
---
L
C
A
G
-----------------
I
P
T
D
T
----
P
R
-
V
Q
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
54.33
43%
41
- C12 -
3TI8
2
?
A:
[213-249]
-----------------------------------------------------
D
N
W
N
G
M
N
R
-
P
I
L
I
F
D
E
D
L
D
-
Y
E
--
V
G
Y
---
L
C
A
G
-----------------
I
P
T
D
T
----
P
R
-
V
Q
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_CBE
53.82
43%
44
- C12 -
3TI8
2
?
B:
[213-249]
-----------------------------------------------------
D
N
W
N
G
M
N
R
-
P
I
L
I
F
D
E
D
L
D
-
Y
E
--
V
G
Y
---
L
C
A
G
-----------------
I
P
T
D
T
----
P
R
-
V
Q
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_CBE
53.70
43%
40
- C12 -
3SAN
3
?
B:
[213-249]
-----------------------------------------------------
D
N
W
N
G
M
N
R
-
P
I
L
I
F
D
E
D
L
D
-
Y
E
--
V
G
Y
---
L
C
A
G
-----------------
I
P
T
D
T
----
P
R
-
V
Q
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
40.94
13%
-12
- C4 -
3S88
1
?
J:
[38-118]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
C
N
P
N
L
H
Y
W
------------
T
A
Q
E
Q
HNAA
G
I
A
W
I
P
------------
Y
F
--------
G
P
G
A
-------
E
G
I
Y
T
E
G
L
-----
M
H
N
Q
-
N
-
A
L
V
C
----------------
G
L
R
Q
L
A
--------
N
E
T
---
T
Q
----
A
L
Q
----
L
---
F
----
L
R
A
T
T
E
L
R
T
Y
T
I
L
N
R
K
A
I
-----------------------------------------------------------------------------------------------------------------------------------
26
Fugue
32.13
32%
153
- C11 -
3PLX
1
PAND_CAMJE
A:
[3-27]
---------------------------------------------------------------------------------------------------------------------------------------------------
A
M
-------
N
I
------
T
L
--
L
----
K
----
S
K
I
H
R
A
S
--
V
T
E
A
R
L
D
Y
I
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
29.38
13%
199
- C2 -
3SRI
-
?
B:
[4-25]
--------------------------------------------------------------------------
G
--
A
G
P
---
V
A
S
C
-----------------
F
T
T
R
M
----
S
P
P
Q
Q
I
C
L
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
28.86
26%
180
* C11 *
2EEO
2
?
A:
[1-23]
----------------------------------------------------------------------------------------------------------------------------------------------------
M
-------
K
R
------
V
M
--
F
----
H
----
A
K
I
H
R
A
T
--
V
T
Q
A
D
L
H
Y
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
27.06
14%
151
- C9 -
2FYU
-
QCR10_BOVIN
K:
[13-33]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
R
N
W
V
P
T
A
S
L
W
------------
G
A
V
G
A
----
V
G
L
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------