@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA2946: (2016-02-12 )
MTLSEPVRRCPRNGKRIAREPGDRPGTFRLIHPRWAGASVKRAVRACSSCVLLCHAHANPEGTHHVQQHPGARQLHHLPVEATEPGHRRRPARRAAGLFRRFLAHRRGTQRRPRYPAQLRLPLPLSREGTRMIKRIAQTAGFAGLLAALLLTLLQILWVTPLILEAETYEKSEPVAAQPHEHAPGVAAHVHDEEAWEPEDGWQRTLSTTGGNLVVAVGFALMLAGLFTLRAPGQTWQGLLWGLAGYAVFCLAPSLGLPPELPGTAAADLVQRQYWWIATAAATAVGLALLVFGGNWPLKLVGAVLLALPHLFGAPQPEVHASLAPEALAQRFVVASLVSNALFWAALGLAAAWLFRRNRGGVDA
Atome Classification :
(17 SA)
---------------------------------------......-----...10--........20...---.....30........40........50........--60........70...---....----.80....--....90--........100.......110.......120.......130.......140---........150.-...----...160.......170.......180.---....--..190.......-200.......210-.........220.---..----.----------...230-.......240-...---.....250....---...260...---....270..---.....280.......290......------.300------........310.......320..-----.....330.......340.--------......350.......360..----
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------MTL
S
E
P
-----
V
R
RCP--RNG
K
R
IAREPGDR---PG
T
F
R
L
IHPRWA
G
A
S
V
K
R
A
V
R
A
C
S
S
C
V
L
L
C
HAHAN--PEGTH
H
V
Q
QHPGARQ---
L
H
HL----PVEATEP--GHRRR
P
--
A
R
R
A
A
G
L
F
R
R
F
L
A
HRRGTQRRPRYP
A
Q
L
RLPLPLSR
E
G
T
R
M
I
K
R
I
A
Q
TA
G
----
F
A
G
L
L
A
A
L
L
L
T
L
-
L
Q
I
----
L
WVT
P
L
I
L
EAETYEKSEPVAAQPHEHA---PG
V
A
--
A
H
VHDEEAWEPE-D
G
W
Q
R
T
LSTTG---G
N
L
V
V
A
V
G
F
A
L
M
L
---
A
G
----
L
----------
F
TLRAP-G
Q
T
W
Q
G
L
L
W
--
G
L
A
---
G
Y
A
V
F
C
LAPSLG---LPPELP
G
T
A
---
A
A
D
L
V
Q
R
Q
Y
---
W
W
I
A
T
A
A
A
T
A
V
G
L
A
L
L
V
FGGN
W
P
L
------
K
L
V
-------
G
A
V
L
L
A
L
P
H
L
FGAPQ
P
E
V
H
A
SL
A
-----
P
E
A
L
A
Q
R
F
V
V
A
S
L
V
S
N
A
L
F
--------
W
A
A
L
G
L
A
A
A
W
L
F
RRNRGGVDA----
15
Fugue
90.57
19%
-92
* C6 *
4ONQ
1
?
A:
[7-353]
----------------------------------------
R
L
P
K
P
MIGFG
V
P
T
E
P
--
L
P
A
M
V
R
R
T
L
P
S
Q
A
---
V
G
P
P
F
F
Y
Y
E
N
V
A
L
A
P
K
G
V
W
D
T
I
S
S
S
L
Y
D
I
-----
E
--
P
E
F
V
D
S
K
Y
F
C
A
A
A
R
K
R
G
Y
I
H
N
L
----
P
V
E
N
R
F
P
--
L
F
P
L
A
P
RT
I
H
E
A
L
P
L
S
K
K
W
W
P
---
S
W
D
P
R
T
K
L
N
C
-
L
Q
T
A
I
G
S
A
Q
L
T
N
R
I
R
K
A
V
E
D
F
D
G
EPP
M
R
V
Q
K
F
V
L
D
Q
C
R
K
-
W
N
L
----
V
W
V
G
R
N
K
V
A
P
L
E
P
D
E
V
E
M
L
L
G
F
P
K
N
H
T
---
R
G
G
G
--
I
---------
S
R
-
T
D
R
Y
K
S
L
G
N
S
-------
F
Q
V
D
T
V
A
Y
H
L
---
S
V
----
L
----------
K
D
L
F
P
G
-
G
I
N
V
L
S
L
F
S
--
G
I
G
---
G
G
E
V
A
L
Y
R
--
L
G
---
I
P
L
N
T
V
V
S
V
---
E
K
S
E
V
N
R
D
I
V
R
S
W
W
E
Q
T
------
N
Q
R
G
N
L
I
H
F
N
D
V
Q
------
Q
L
N
-------
G
D
R
L
E
Q
L
I
E
S
F
G
G
F
D
--------------------
L
V
I
G
G
S
P
S
L
F
S
S
--------
Y
V
R
I
L
D
L
V
K
S
I
M
S
------------
22
Fugue
83.50
15%
-65
- C6 -
2XTS
9
?
A:
[2-390]
-----------------------------------GTPD
P
L
I
T
E
I
-----
Q
P
W
A
S
--
E
F
G
E
A
V
D
A
H
P
Y
G
L
---
P
I
H
F
E
S
H
V
K
R
Q
Y
V
E
W
L
T
E
S
P
V
S
S
I
N
F
T
P
I
H
A
L
E
G
T
IT
P
Q
G
C
A
F
E
R
H
H
S
G
A
I
E
---
L
S
K
Q
----
D
Y
R
L
M
I
N
--
G
L
V
E
K
P
--
L
V
F
T
F
E
D
L
L
R
F
P
R
T
T
T
T
A
F
C
E
C
A
A
N
G
G
M
E
W
G
G
A
Q
L
E
-
G
C
Q
Y
T
Q
G
M
I
H
N
M
E
----
Y
V
G
V
P
L
S
V
L
L
A
E
-
A
G
V
KPEG
K
W
L
Y
A
E
G
A
D
A
S
S
N
G
R
S
F
P
M
E
K
V
M
D
D
------
V
M
L
--
A
F
F
A
N
G
E
A
L
R
K
E
-
H
G
Y
P
A
R
L
V
V
P
G
WE-
G
N
M
W
V
K
W
V
R
R
L
G
I
---
Y
D
----
K
AVESREETSK
Y
T
D
L
M
P
-
D
G
R
A
R
K
W
T
W
--
V
M
D
---
A
K
S
V
I
T
S
P
S
P
Q
V
---
P
I
R
H
G
K
G
-------
P
L
V
I
S
G
L
---
A
W
S
G
N
G
R
I
T
R
V
D
V
S
L
-
D
G
G
K
N
W
T
T
------
A
R
I
T
G
QALPK
A
L
T
R
F
H
L
D
I
D
W
D
G
S
E
M
L
L
Q
S
R
A
V
D
ETGY
V
Q
P
T
K
D
A
L
R
A
I
R
G
R
N
N
V
Y
H
--------
N
N
G
I
---
Q
T
W
W
V
K
A
D
-
G
E
V
E
N
VEIA
13
Fugue
74.18
18%
-6
- C7 -
4NL7
-
SMN_HUMAN
A:
[1-272]
---------------------------------------
G
V
P
E
Q
E
-----
D
S
V
L
F
--
R
R
G
T
G
Q
S
D
D
S
D
I
W
---
D
D
T
A
L
I
K
A
Y
D
K
A
V
A
S
F
K
H
A
L
K
N
G
D
I
C
----------------------------------------
E
T
S
G
--
K
P
K
T
T
P
--
K
R
K
P
A
K
K
N
K
S
Q
K
K
N
T
A
A
S
L
Q
Q
W
K
V
G
D
K
C
S
A
I
W
--
S
E
D
G
C
I
Y
P
A
T
I
A
S
I
D
-------------------------
F
K
R
E
T
C
V
V
V
Y
T
G
Y
G
N
R
E
E
Q
N
L
S
D
L
L
S
P
---
I
C
E
V
--
A
N
N
I
E
Q
N
A
Q
E
N
E
-
N
E
S
Q
V
S
T
D
E
S
E
---
N
S
----------------------------------
R
S
P
-
G
N
K
S
D
N
I
K
P
--
K
S
A
---
P
W
N
S
F
-----
L
P
---
P
P
P
P
M
P
G
P
R
---
L
G
P
--------------------
G
K
P
G
L
K
F
N
G
P
P
P
P
P
P
P
P
P
P
H
L
L
-------
S
C
W
L
P
P
F
P
S
--
G
P
P
I
I
P
P
P
P
P
I
C
-----
P
D
S
L
D
D
A
---
D
A
L
G
S
M
L
I
S
--------
W
Y
M
S
G
Y
H
T
G
Y
Y
M
E
M
L
A
---------
19
Fugue
73.86
12%
-78
- C6 -
2HBV
1
?
A:
[3-333]
--------------------------------------K
P
R
I
D
M
H
-----
S
H
F
F
P
--
R
I
S
E
Q
E
A
A
K
F
D
A
N
---
H
A
P
W
L
Q
V
S
A
K
G
D
T
G
S
I
M
M
G
K
N
N
F
R
P
V
Y
Q
A
L
W
D
--
P
--
A
F
R
I
E
E
M
D
A
Q
G
V
D
V
Q
---
V
T
C
A
----
T
P
V
M
F
G
Y
--
T
W
E
A
N
K
--
A
A
Q
W
A
E
R
M
N
D
F
A
L
E
F
A
A
-
H
N
P
Q
R
I
K
V
L
A
Q
V
P
L
Q
D
L
D
L
A
C
K
E
A
S
R
A
V
A
A
-
G
----
H
L
G
I
Q
I
G
N
H
L
G
D
-
K
D
L
---------------
D
D
A
T
L
E
A
F
L
T
H
C
A
N
E
D
---
I
P
I
L
--
V
H
P
W
D
M
M
G
G
Q
R
M
-
K
K
W
M
L
P
W
L
V
A
M
---
P
A
E
T
Q
L
A
I
L
S
L
I
L
---
S
G
----
A
----------
F
E
-
R
I
P
-
K
S
L
K
I
C
F
G
H
GG
G
S
F
---
A
F
L
L
G
R
V
D
N
A
W
R
---
H
R
D
I
V
R
E
D
C
PRP
P
S
E
Y
V
D
R
F
F
---
V
D
S
A
V
F
N
P
G
A
L
E
L
L
V
S
V
M
G
-------------
E
-------
D
R
V
M
L
G
S
D
Y
P
F
P
L
G
E
Q
K
I
G
G
L
V
L
-----
S
S
N
L
G
E
S
A
K
D
K
I
I
S
G
N
A
S
K
--------
F
F
N
I
N
--------------------
18
Fugue
67.81
14%
-78
- C4 -
4OYF
1
?
A:
[9-416]
EYPV
L
Q
K
I
L
I
G
L
I
L
G
A
I
V
G
L
I
L
G
H
Y
GY
A
H
A
V
H
T
Y
V
K
P
F
G
D
L
F
V
R
L
-----
L
K
M
L
V
--
M
P
I
V
F
A
S
L
V
V
G
A
A
S
I
S
P
A
R
L
G
R
V
G
V
K
I
V
V
Y
Y
L
L
T
S
A
F
A
V
T
L
G
I
I
M
A
R
L
F
N
P
--
G
A
G
I
H
L
A
V
G
G
Q
L
V
H
I
---
L
L
D
I
VPTN
P
F
G
A
L
A
N
--
G
Q
V
L
P
T
--
I
F
F
A
I
I
L
G
I
A
I
T
Y
L
M
N
S
E
N
E
K
V
R
K
S
A
E
T
L
L
D
-
A
I
N
G
L
A
E
A
M
Y
K
I
V
N
G
V
M
Q
----
Y
A
P
I
G
V
F
A
L
I
A
Y
-
V
M
A
----
E
Q
G
V
H
V
V
G
E
L
A
K
V
T
A
A
V
Y
V
G
L
T
L
Q
I
L
L
V
Y
F
V
L
L
K
--
I
Y
G
I
D
P
I
S
F
I
K
H
A
K
D
A
M
L
T
A
F
V
T
R
SSS
G
T
L
P
V
T
M
R
V
A
K
E
M
GIS
E
G
----
I
----------
Y
S
F
T
L
P
-
L
G
A
T
I
-
N
M
D
--
G
T
A
L
Y
Q
G
V
C
T
F
F
I
A
N
A
L
G
----------------
S
H
L
T
V
G
Q
Q
---
L
T
I
V
L
T
A
V
L
A
S
I
G
T
A
G
V
P
G
------------
A
G
-------
A
I
M
L
A
M
V
L
H
S
V
G
L
P
L
T
D
P
N
V
A
A
A
-----
Y
A
M
I
L
G
I
D
A
I
L
D
M
G
R
T
M
V
N
--------
V
T
G
D
L
T
G
T
A
I
V
A
K
T
E
----------
20
Fugue
66.00
17%
-35
* C5 *
4U9O
1
NQRA_VIBCH
A:
[14-332]
---------------------------------------
P
I
A
G
T
P
-----
S
Q
V
I
S
D
G
K
A
I
K
K
V
A
L
L
G
E
E
Y
---
V
G
M
R
P
T
M
H
V
R
-
V
G
D
E
V
K
K
-------
A
Q
I
L
F
E
D
K
K
N
--
P
G
-------------------------
V
K
F
T
S
P
V
S
G
K
V
V
E
I
--
N
R
G
A
K
R
V
L
Q
S
V
V
I
E
V
A
G
D
D
Q
V
T
F
D
K
F
E
---
A
N
Q
L
A
S
L
N
R
D
A
I
K
T
Q
L
V
E
S
G
---------------
L
-
W
T
A
----
F
R
T
R
P
F
S
K
V
P
A
I
D
S
T
S
E
A
I
F
V
T
A
M
D
T
N
---
P
L
A
A
E
P
T
V
V
I
N
E
Q
S
E
A
F
V
-
A
G
L
D
V
L
S
A
L
T
T
---
G
K
V
Y
V
C
K
K
G
T
S
L
P
---
R
S
QQPN
V
----------
E
E
H
V
F
D
-
G
P
H
P
D
H
V
A
W
--
S
I
N
---
Y
Q
D
V
I
A
V
G
Q
L
F
L
T
GE
L
Y
T
Q
R
V
V
S
L
---
A
G
P
V
V
N
K
P
R
---
L
V
R
T
V
M
G
A
S
---
L
E
Q
L
V
D
S
E
I
M
P
G
------
E
---------------
V
R
I
I
S
G
S
V
L
S
G
T
K
A
T
G
P
-----
H
A
Y
L
G
R
Y
H
L
Q
V
S
V
L
R
E
G
-----------------------------------
21
Fugue
50.51
10%
-25
- C5 -
2P4B
1
RSEB_ECOLI
A:
[3-293]
----------------------------------A
S
G
A
L
L
Q
Q
M
N
L
-----
A
S
Q
S
L
--
N
Y
E
L
S
F
I
S
I
N
K
Q
G
---
V
E
S
L
R
Y
R
H
A
R
L
D
N
R
P
L
A
Q
L
L
Q
M
D
G
P
-----
R
R
E
V
V
--
Q
R
G
N
E
I
S
Y
F
E
P
G
L
E
P
---
F
T
L
N
----
G
D
Y
I
V
D
S
---
L
P
S
L
I
--
Y
T
D
F
K
R
L
S
P
Y
Y
D
F
I
S
V
G
R
T
R
I
A
D
R
L
C
E
V
I
R
V
V
A
R
D
G
T
R
Y
S
Y
I
V
W
M
D
T
E
S
K
----
L
-----
P
M
R
V
D
L
-
L
D
R
----
D
G
E
T
L
E
Q
F
R
V
I
A
F
N
V
N
Q
D
I
S
S
S
M
Q
T
L
A
---
K
A
N
L
--
P
P
L
K
A
K
F
S
W
T
P
T
-
W
-----------------
L
P
Q
G
F
S
E
V
S
---
S
S
----
R
----------
R
P
L
P
T
M
D
N
M
P
I
E
S
R
L
Y
S
D
G
L
F
---
S
F
S
V
N
V
N
R
A
T
P
S
---
S
T
D
Q
M
L
R
T
G
---
R
R
T
V
S
T
S
V
R
----------------------
D
N
A
E
I
------
T
I
V
-------
G
E
L
-------------------------
P
P
Q
T
A
K
R
I
A
E
N
I
K
F
G
A
------------------------------------
3
PsiBlast_CBE
40.18
44%
37
- C9 -
3G7N
3
?
B:
[139-188]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
A
-----
H
V
A
L
A
Q
N
F
P
D
K
S
L
V
S
N
A
L
N
AFPIGN
Q
A
W
A
D
F
G
T
A
Q
A
G
T
F
N
R
G
N
N
V
L
D
-----
1
PsiBlast_PDB
39.60
44%
30
* C9 *
3G7N
-
?
A:
[139-188]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
A
-----
H
V
A
L
A
Q
N
F
P
D
K
S
L
V
S
N
A
L
N
AFPIGN
Q
A
W
A
D
F
G
T
A
Q
A
G
T
F
N
R
G
N
N
V
L
D
-----
2
PsiBlast_PDB
36.86
37%
127
* C8 *
4OLZ
-
?
H:
[32-66]
-----------------------------------------------------
C
P
--
I
N
W
I
R
L
A
--
P
G
K
R
---
P
E
W
M
G
W
M
K
P
R
W
G
A
V
S
Y
A
R
Q
L
Q
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
35.72
18%
-8
* C7 *
2JWA
-
ERBB2_HUMAN
A:
[41-84]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
C
P
A
-----
E
Q
R
A
S
P
L
T
S
I
I
S
A
V
V
G
I
L
L
--------
V
V
V
L
G
V
V
F
G
I
L
I
K
R
R
Q
Q
K
I
R
K
----
12
HHSearch
31.58
50%
1038
- C1 -
3PF6
-
?
A:
[31-40]
---------------------------------------------------------------------------------------------------------
L
L
F
--
P
G
G
T
H
H
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
30.25
29%
621
- C8 -
2RPS
-
?
A:
[1-14]
------------------------------------------
S
V
Q
-----
I
L
R
C
P
--
D
G
M
Q
M
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
29.15
4%
45
- C7 -
1V54
-
COX6C_BOVIN
I:
[13-56]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
L
A
R
R
L
R
F
H
I
----
V
G
A
F
M
V
S
L
G
F
A
T
F
Y
K
F
----
A
V
A
E
K
R
K
K
A
Y
A
D
F
Y
R
N
Y
D
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
26.85
21%
806
- C3 -
2GKW
-
?
B:
[2-15]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
V
P
A
T
E
L
G
S
T
E
L
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
18.92
53%
444
- C9 -
2LCN
-
?
A:
[1-15]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
---
W
W
L
A
L
A
L
A
P
A
L
A
L
A
----------------------------------------------------------------------------------------------------------
8
HHSearch
9.67
0%
1737
- C2 -
2JWA
-
ERBB2_HUMAN
A:
[53-58]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
I
---
S
A
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------