@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA3019: (2016-02-13 )
MTLLKFTDVSLAFGTTPLLDKVSWQIGRGERVCVIGRNGTGKSSLFKVVKGEQQADDGEVWRAPALKIGELPQELPRADERIVFDVVAEGLAEVGKLLAEYHHLSLNIHTDDDLARLSRVQQELEARDGWRLQQLVDSTLSRLQLPADKTLAELSGGWRRRVLLAQALVAEPDLLLLDEPTNHLDIGAIAWLEEALLGFNGAVLFITHDRAFLQSLATRILELDRGHLIDWNGDYASFLVHKEQQLAAEEAANALFDKRLAQEEVWIRQGIKARRTRNEGRVRALKEMRRERAERRERQGKASFQLESADKSGKQVIVVEHVSFAHPGGQPLVRDFSMVLQRGDRIGLLGANGTGKTTLLKLLLGDLQPTSGKIEVGTKLEVAYFDQLRHQLEPEQTVIDNISEGREFITIDGQNRHVLSYLGDFLFSPQRARTPVKALSGGERARLLLAKLFSKPANLLVLDEPTNDLDVETLELLEEVLLGFQGTVLMVSHDRAFLDNVVTSTLVFEGEGKVREFVGGYQDWLRQGGTPRLLGVSESKSGKAELNTALAPAAEPAPAAAAPSEAPAKKKLSYKLQRELEALPGQIDAVEAELAGVQETIAQQDFYLRPQDEQRETLARLDALQQELDALLERWAELED
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------.........10...-.-------.-...20.....-..-------------.30.........40.......--.50.---.....--..60...----------.--...--.70.....-..-.--80...--.....90.......-----.100..-.....110....-----------..----.120.......130.......140....--.--..150.......160.......170.......180.....-------..190....--...----200--........210.......220.......230-.......240.......--250.......260.......270.......280.......290.......300-......---------..310...------....320.......--330.........340...-----....350.......360........370----....-...-----------380.......-390.--.--------.....400----------------------------------------------------------------......----.-------..--------------------------410.........420-----........--.----430..--------...----...440.......450.......460.......470----.......480..----..---.----..490......-.500....-...510-........520.......530.......540.......550.-.-...-..560..--.....570--.......-..580.......590.......600.......610.......620.......630.......640------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------M
T
L
L
K
F
T
D
V
S
L
AFG-T-------T-
P
L
L
D
K
V
S
W
QI-GR-------------G
E
-
R
V
C
V
IGRNGT
G
K
S
S
L
F
K
V
--VKGE---QQADD--GEVWRAP----------A--
L
K
I
--
G
E
L
P
Q
ELP-RA-D--
E
R
I
V
F
--
D
V
V
A
E
G
L
A
E
V
G
K
L
L
-----
A
EY
H
H
L
-
S
L
N
I
HT
D
D
D
L
A
R
-----------
L
S
----
R
V
Q
Q
E
L
E
ARDG
W
R
L
Q
Q
L
V
D
S
T
L
S
R
LQLP--A--
D
K
T
L
A
E
LSGG
W
R
R
R
V
L
L
A
Q
A
LVAEP
D
L
L
L
LDEPTNHL
D
I
G
-------
A
I
A
W
L
E
E
A
L
--LGF----N
G
---
A
V
L
F
I
TH
D
R
A
F
L
Q
S
L
A
T
R
I
L
ELDRG
H
L
I
DWN-G
D
Y
A
S
F
L
V
H
K
E
Q
Q
L
A
A
E
--
E
A
A
N
A
L
F
D
K
R
L
A
Q
E
E
V
W
I
R
QG
I
K
A
RRTRNE
G
R
V
R
A
L
K
E
M
R
R
E
R
A
E
R
R
E
RQGK--
A
S
F
Q
L
E---------SADKSG
K
Q
------
V
I
V
V
E
H
V
S
FAHPGG--
Q
--
P
L
V
R
D
F
S
M
V
L
QRGD
R
-----
I
G
L
L
GANGT
G
K
T
T
L
L
K
-
L
L
L
GDLQPTS
G
----
K
I
E
V
-G
T
K
-----------
L
E
V
A
Y
F
D
Q
L
R
-
H
QLE--
P
--------
E
Q
T
V
I
D
------------------------------------------------------------------
N
I
SEG
R
----
E
-------
F
I
--------------------------
T
--IDGQN
R
H
V
L
S
-------
Y
L
G
D
F
LFS--P----QR-AR--------TP
V
----
K
ALSG
G
E
R
A
R
L
L
L
A
K
L
FSKPA
N
L
L
V
LDEPTNDLD
V
E
----
T
L
E
L
L
E
E
V
L
L
GF----Q
G
---
T
----
V
L
M
V
SH
D
R
A
F
L
-
D
N
V
V
T
S
T
L
-
V
FEGE--G
K
V
R
E
F
V
G
G
Y
Q
D
W
L
RQGGT
P
R
L
L
G
VSESKSGKAELNTALAPA-A-EPA-PAAAAPS--EAP
A
K
K
----
K
L
S
Y
K
L
Q
-
R
E
L
E
ALPGQ
I
D
A
V
E
A
E
L
A
G
V
Q
E
T
I
A
QQ
D
F
YLRP
Q
D
E
Q
R
E
T
L
A
R
L
D
A
L
Q
Q
E
L
D
A
L
L
E
R
W
A
ELED--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
84.49
38%
-95
- C1 -
4FIN
12
ETTA_ECOLI
A:
[21-530]
----------------------------------------------------------------------------------------------------------------
I
L
K
N
I
S
L
S
F
-
F
P
-------------
G
A
-
K
I
G
V
L
G
L
N
G
A
G
K
S
T
L
L
R
I
--
M
A
G
I
---
D
K
D
I
E
--
G
E
A
R
P
Q
P
----------
D
--
I
K
I
--
G
Y
L
P
Q
E
P
Q
-
L
N
-
P
--
E
H
T
V
R
--
E
S
I
E
E
A
V
S
E
V
V
N
A
L
-----
K
R
L
D
E
V
Y
A
L
Y
A
D
P
D
A
D
F
D
K
-----------
L
A
A
E
Q
G
R
L
E
E
I
I
Q
------
L
N
V
Q
L
E
R
A
A
D
A
L
R
L
P
--
D
W-
D
A
K
I
A
N
L
S
G
G
E
R
R
R
V
A
L
C
R
L
L
L
E
K
P
D
M
L
L
L
D
E
P
T
N
H
L
D
A
E
-------
S
V
A
W
L
E
R
F
L
--
H
D
F
----
E
G
---
T
V
V
A
I
T
H
D
R
Y
F
L
D
N
V
A
G
W
I
L
E
L
D
R
G
E
G
I
P
W
E
-
G
N
Y
S
S
W
L
E
Q
K
D
Q
R
L
A
Q
E
--
A
S
Q
E
A
A
R
R
K
S
I
E
K
E
L
E
W
V
R
Q
G
T
K
----
K
G
K
A
R
L
A
R
F
E
E
L
--
N
S
T
E
Y
Q
K
R
N
E
T
--
N
E
L
F
I
P
---------
P
G
P
R
L
G
D
K
------
V
L
E
V
S
N
L
R
K
S
Y
-
G
D
--
R
--
L
L
I
D
D
L
S
F
S
I
P
K
G
A
I
-----
V
G
I
I
G
P
N
G
A
G
K
S
T
L
F
R
-
M
I
S
G
Q
E
Q
P
D
S
G
----
T
I
T
L
-
G
E
T
-----------
V
K
L
A
S
V
D
Q
F
R
-
D
S
M
D
--
N
--------
S
K
T
V
W
E
------------------------------------------------------------------
E
V
S
G
G
L
----
D
-------
I
M
--------------------------
K
--
I
G
N
T
E
M
P
S
R
A
-------
Y
V
G
R
F
N
F
K
--
G
----
V
D
-
Q
G
--------
K
R
V
----
G
E
L
S
G
G
E
R
G
R
L
H
L
A
K
L
L
Q
V
G
G
N
M
L
L
L
D
E
P
T
N
D
L
D
I
E
----
T
L
R
A
L
E
N
A
L
L
E
F
----
P
G
---
C
----
A
M
V
I
S
H
D
R
W
F
L
-
D
R
I
A
T
H
I
L
-
D
Y
Q
D
E
--
G
K
V
E
F
F
E
G
N
F
T
E
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
82.82
38%
-82
- C1 -
3J5S
-
ETTA_ECOLI
D:
[27-536]
----------------------------------------------------------------------------------------------------------------
I
L
K
N
I
S
L
S
F
-
F
P
-------------
G
A
-
K
I
G
V
L
G
L
N
G
A
G
K
S
T
L
L
R
I
--
M
A
G
I
---
D
K
D
I
E
--
G
E
A
R
P
Q
P
----------
D
--
I
K
I
--
G
Y
L
P
Q
E
P
Q
-
L
N
-
P
--
E
H
T
V
R
--
E
S
I
E
E
A
V
S
E
V
V
N
A
L
-----
K
R
L
D
E
V
Y
A
L
Y
A
D
P
D
A
D
F
D
K
-----------
L
A
AEQG
R
L
E
E
I
I
Q
A
H
D
G
H
N
L
N
V
Q
L
E
R
A
A
D
A
L
R
L
P
--
D
W-
D
A
K
I
A
N
L
S
G
G
E
R
R
R
V
A
L
C
R
L
L
L
E
K
P
D
M
L
L
L
D
E
P
T
N
H
L
D
A
E
-------
S
V
A
W
L
E
R
F
L
--
H
D
F
----
E
G
---
T
V
V
A
I
T
H
D
R
Y
F
L
D
N
V
A
G
W
I
L
E
L
D
R
G
E
G
I
P
W
E
-
G
N
Y
S
S
W
L
E
Q
K
D
Q
R
L
A
Q
E
--
A
S
Q
E
A
A
R
R
K
S
I
E
K
E
L
E
W
V
R
Q
G
T
K
G
R
Q
S
K
G
K
A
R
L
A
R
F
E
E
L
--
N
S
T
E
Y
Q
K
R
N
E
T
--
N
E
L
F
I
P
---------
P
G
P
R
L
G
D
K
------
V
L
E
V
S
N
L
R
K
S
Y
-
G
D
--
R
--
L
L
I
D
D
L
S
F
S
I
P
K
G
A
I
-----
V
G
I
I
G
P
N
G
A
G
K
S
T
L
F
R
-
M
I
S
G
Q
E
Q
P
D
S
G
----
T
I
T
L
-
G
E
T
-----------
V
K
L
A
S
V
D
Q
F
R
-
D
S
M
D
--
N
--------
S
K
T
V
W
E
------------------------------------------------------------------
E
V
S
G
G
L
----
D
-------
I
M
--------------------------
K
--
I
G
N
T
E
M
P
S
R
A
-------
Y
V
G
R
F
N
F
K
--
G
----
V
D
-
Q
G
--------
K
R
V
----
G
E
L
S
G
G
E
R
G
R
L
H
L
A
K
L
L
Q
V
G
G
N
M
L
L
L
D
E
P
T
N
D
L
D
I
E
----
T
L
R
A
L
E
N
A
L
L
E
F
----
P
G
---
C
----
A
M
V
I
S
H
D
R
W
F
L
-
D
R
I
A
T
H
I
L
-
D
Y
Q
D
E
--
G
K
V
E
F
F
E
G
N
F
T
E
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
77.82
28%
-107
- C- -
2IW3
7
EF3A_YEAST
A:
[439-979]
--------------------------------------------------------------------------------------------
C
E
F
S
L
A
Y
G
-
A
-------
K
-
I
L
L
N
K
T
Q
L
R
L
-
K
R
-------------
A
R
-
R
Y
G
I
C
G
P
N
G
C
G
K
S
T
L
M
R
A
--
I
A
N
G
---
Q
V
--
D
--
G
F
P
T
-
Q
E
----------
E
--
C
R
T
--
V
Y
V
E
H
D
I
D
-
G
T
H
S
--
D
T
S
V
L
--
D
F
V
F
E
S
G
-----------------------------------------------------------
V
G
T
K
E
A
I
K
D
K
L
I
E
F
G
F
T
D
E
M
I
-
A
M
P
I
S
A
L
S
G
G
W
K
M
K
L
A
L
A
R
A
V
L
R
N
A
D
I
L
L
L
D
E
P
T
N
H
L
D
T
V
-------
N
V
A
W
L
V
N
Y
L
--
N
T
C
----
G
I
---
T
S
I
T
I
S
H
D
S
V
F
L
D
N
V
C
E
Y
I
I
N
Y
E
G
L
K
L
R
K
Y
K
-
G
N
F
T
E
F
V
K
K
C
P
A
A
K
-------
A
---
Y
E
E
L
S
----
N
-------------
T
D
-----
L
E
----
F
K
-
F
P
E
-
P
G
Y
--
L
----
E
---------
G
V
K
T
K
Q
K
A
------
I
V
K
V
T
N
M
E
F
Q
-
Y
P
G
TS
K
--
P
Q
I
T
D
I
N
F
Q
C
S
L
S
S
R
-----
I
A
V
I
G
P
N
G
A
G
K
S
T
L
I
N
-
V
L
T
G
E
L
L
P
T
S
G
----
E
V
Y
T
-
H
E
N
-----------
C
R
I
A
Y
I
K
Q
H
A
F
A
H
I
E
SH
L
--------
D
K
T
P
S
E
Y
I
Q
W
R
F
Q
TGEDRETMDRANRQINEND
A
E
A
M
N
K
I
F
K
I
EG
T
P
R
R
IAGIH
S
R
R
K
F
KN
T
Y
E
Y
E
C
S
F
L
L
G
E
N
I
G
M
K
S
E
R
W
V
P
M
M
SVD
N
A
W
I
P
RGELVESH
S
K
M
V
A
E
V
D
M
K
E
A
L
A
S
GQ
F
--
R
P
L
T
R
K
E
I
E
E
-------
H
C
S
M
L
G
L
D
--
P
----
E
I
V
S
H
--------
S
R
I
----
R
G
L
S
G
G
Q
K
V
K
L
V
L
A
A
G
T
W
Q
R
P
H
L
I
V
L
D
E
P
T
N
Y
L
D
R
D
----
S
L
G
A
L
S
K
A
L
K
E
F
----
E
G
---
G
----
V
I
I
I
T
H
S
A
E
F
T
-
K
N
L
T
E
E
V
W
-
A
V
K
-
D
--
G
R
M
T
P
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
66.76
27%
-76
- C1 -
1YQT
4
?
A:
[44-478]
------------------------------------------------------------------------------------------------------------------------
V
-
K
E
-------------
G
M
-
V
V
G
I
V
G
P
N
G
T
G
K
S
T
A
V
K
I
--
L
A
G
Q
LIP
N
L
C
G
D
--
N
D
S
W
D
G
V
I
R
--------
A
--
F
R
G
--
N
E
L
Q
N
Y
F
E
-
K
L
-
K
--
N
G
E
I
R
--
P
V
V
K
P
Q
Y
V
D
L
I
P
K
A
-----
V
K
G
K
V
I
-
E
L
-
L
K
K
A
D
E
T
G
K
-----------
L
E
----
E
V
V
K
A
L
E
----------
L
E
N
V
L
E
R
-----------
E
I
Q
H
L
S
G
G
E
L
Q
R
V
A
I
A
A
A
L
L
R
N
A
T
F
Y
F
F
D
E
P
S
S
Y
L
D
I
R
Q
R
L
N
A
A
R
A
I
R
R
L
S
E
E
----------
G
K
---
S
V
L
V
V
E
H
D
L
A
V
L
D
Y
L
S
D
I
I
------
H
V
V
Y
G
E
P
G
V
Y
G
I
F
----
S
Q
P
K
G
T
R
--
N
G
I
N
E
F
L
R
G
Y
L
K
D
E
N
V
R
F
R
P
-
Y
E
I
K
F
T
K
T
G
E
R
V
----
E
I
E
R
E
T
L
V
T
Y
P
R
L
V
K
D
Y
G
S
F
R
L
E
--------------------------------
V
E
P
G
E
--------------
I
K
K
G
E
V
-----
I
G
I
V
G
P
N
G
I
G
K
T
T
F
V
K
-
M
L
A
G
V
E
E
P
T
E
G
----
K
I
E
---
W
D
-----------
L
T
V
A
Y
K
P
Q
Y
--
I
K
A
D
--
Y
--------
E
G
T
V
Y
E
------------------------------------------------------------------
L
L
S
K
---------------------------------------------
I
D
A
S
K
L
N
S
N
F
-------
Y
K
T
E
-
L
L
K
--
P
LGII
D
L
-
Y
D
--------
R
E
V
----
N
E
L
S
G
G
E
L
Q
R
V
A
I
A
A
T
L
L
R
D
A
D
I
Y
L
L
D
E
P
S
A
Y
L
D
V
E
----
Q
R
L
A
V
S
R
A
I
R
H
L
M
E
K
N
E
K
---
T
----
A
L
V
V
E
H
D
V
L
M
I
-
D
Y
V
S
D
R
L
M
-
V
F
E
G
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
60.87
21%
-79
- C1 -
3OZX
5
?
A:
[4-463]
---------------------------------------------------------------------------------------------
E
V
I
H
R
Y
K
V
N
-------
G
-
F
K
L
F
G
L
P
T
-
P
-
K
N
-------------
N
T
-
I
L
G
V
L
G
K
N
G
V
G
K
T
T
V
L
K
I
--
L
A
G
E
---
I
I
P
N
F
--
G
D
P
N
S
K
V
G
K
D
E
V
L
K
R
F
R
G
--
K
E
I
--
Y
N
Y
F
K
E
L
Y
-
S
--
N
--
E
L
K
I
V
--
H
K
I
Q
Y
V
E
Y
-----
A
-----
S
K
F
--
L
------------------------
K
G
----
T
V
N
E
I
---
L
T
K
I
D
E
R
G
K
K
D
E
V
K
E
L
L
N
M
T
N-
L
W-
N
K
D
A
N
I
L
S
G
G
G
L
Q
R
L
L
V
A
A
S
L
L
R
E
A
D
V
Y
I
F
D
Q
P
S
S
Y
L
D
V
R
-------
E
R
M
N
M
A
K
A
I
--
R
E
L
L
K--
N
K
---
Y
V
I
V
V
D
H
D
L
I
V
L
D
Y
L
T
D
L
I
H
I
I
Y
-
G
E
S
S
V
Y
--
G
R
V
S
K
S
Y
A
A
R
V
G
I
-------------
N
N
F
L
K
---
G
Y
L
P
A
---
E
-----
N
M
K
I
R
P
-
D
E
I
K
--
F
M
-
L
K
---------------------------
L
K
T
------
K
M
K
W
T
K
I
I
K
K
-
L
G
D
-----
F
Q
L
V
V
D
N
G
E
A
K
E
G
E
I
-----
I
G
I
L
G
P
N
G
I
G
K
T
T
F
A
R
-
I
L
V
G
E
I
T
A
D
E
G
----
S
V
T
P
-
E
K
Q
------------
I
L
S
Y
K
P
Q
R
I
-
F
-
P
N
--
Y
--------
D
G
T
V
Q
Q
------------------------------------------------------------------
Y
L
E
N
A
S
----
K
-------
D
A
--------------------------
L
---
S
T
S
S
W
F
F
E
E
-------
V
T
K
R
L
N
L
H
--
R
-----
L
-
L
E
--------
S
N
V
----
N
D
L
S
G
G
E
L
Q
K
L
Y
I
A
A
T
L
A
K
E
A
D
L
Y
V
L
D
Q
P
S
S
Y
L
D
V
E
----
E
R
Y
I
V
A
K
A
I
K
R
V
T
R
E
R
K
A
---
V
----
T
F
I
I
D
H
D
L
S
I
H
-
D
Y
I
A
D
R
I
I
-
V
F
K
-
G
--
E
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
59.71
24%
-76
- C1 -
1YQT
4
?
A:
[25-480]
--------------------------------------------------------------------------------------------
E
D
C
V
H
R
Y
G
-
V
N------
A
-
F
V
L
Y
R
L
P
-
V
V
-
K
E
-------------
G
M
-
V
V
G
I
V
G
P
N
G
T
G
K
S
T
A
V
K
I
--
L
A
G
Q
---
L
I
P
N
L
CG
D
N
D
S
W
D
G
----------
V
--
I
R
A
F
R
G
N
E
L
Q
N
Y
F
E
K
L
-
K
--
N
G
E
I
R
--
P
V
V
K
P
Q
Y
V
D
L
---
I
-----
P
K
---
A
---------
V
K
G
K
------------------
V
I
E
---
L
L
K
K
A
D
E
T
G
K
L
E
E
V
V
K
A
L
E
L
E
N-
V
L-
E
R
E
I
Q
H
L
S
G
G
E
L
Q
R
V
A
I
A
A
A
L
L
R
N
A
T
F
Y
F
F
D
E
P
S
S
Y
L
D
I
R
-------
Q
R
L
N
A
A
R
A
I
--
R
R
L
S
E
E
-
G
K
---
S
V
L
V
V
E
H
D
L
A
V
L
D
Y
L
S
D
I
I
H
V
V
Y
G
E
-----
P
-
G
V
Y
G
I
F
S
Q
P
K
G
T
R
N
----------
G
I
N
E
F
L
R
---
G
Y
L
K
D
----------
E
N
-
V
R
F
R
P
Y
E
--
I
K
-
F
T
K
T
G
E
R
--
V
----------------
E
I
E
R
E
T
------
L
V
T
Y
P
R
L
V
K
D
-
Y
G
S
-----
F
R
L
E
V
E
P
G
E
I
K
K
G
E
V
-----
I
G
I
V
G
P
N
G
I
G
K
T
T
F
V
K
-
M
L
A
G
V
E
E
P
T
E
G
----
K
I
E
W
-
D
L
-------------
T
V
A
Y
K
P
Q
Y
I
-
K
A
D
---
Y
--------
E
G
T
V
Y
E
------------------------------------------------------------------
L
L
S
K
I
D
----
A
-------
S
K
--------------------------
L
----
N
S
N
F
Y
K
T
E
-------
L
L
K
P
L
G
I
I
-------
D
L
-
Y
D
--------
R
E
V
----
N
E
L
S
G
G
E
L
Q
R
V
A
I
A
A
T
L
L
R
D
A
D
I
Y
L
L
D
E
P
S
A
Y
L
D
V
E
----
Q
R
L
A
V
S
R
A
I
R
H
L
M
E
K
N
E
K
---
T
----
A
L
V
V
E
H
D
V
L
M
I
-
D
Y
V
S
D
R
L
M
-
V
F
E
-
G
--
E
P
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
58.23
22%
-60
- C1 -
3J16
2
RLI1_YEAST
B:
[103-543]
-----------------------------------------------------------------------------------------------------------------------------------------
G
Q
-
V
L
G
L
V
G
T
N
G
I
G
K
S
T
A
L
K
I
--
L
A
G
K
---
Q
K
P
N
L
--
G
R
F
--------------------------
D
D
P
P
-
E
W
-
Q
--
E
I
I
K
Y
--
F
R
G
S
E
L
Q
N
Y
F
T
K
M
L
-----
E
D
D
I
K
A
-
I
I
K
P
Q
Y
V
D
N
I
P
R
A
I
KGPVQK
V
G
E
L
L
----
K
L
R
M
E
K
S
P
E
D
V
K
R
Y
I
K
I
L
-----
Q
L
E
N
V
--
L
--
K
R
D
I
E
K
L
S
G
G
E
L
Q
R
F
A
I
G
M
S
C
V
Q
E
A
D
V
Y
M
F
D
E
P
S
S
Y
L
D
V
K
Q
R
L
----
N
A
A
Q
I
I
R
S
L
--
L
A
P
----
T
K
---
Y
V
I
C
V
E
H
D
L
S
V
L
D
Y
L
S
D
F
V
C
I
I
------------
Y
G
V
P
S
V
Y
G
V
V
T
L
P
A
S
V
R
E
G
I
N
I
F
L
D
G
H
I
P
A
E
N
L
---------------------
R
F
R
T
E
A
L
Q
F
R
I
A
D
A
T
--
E
D
L
Q
N
D
---------
S
A
S
R
-----------------
A
F
S
Y
P
S
L
--
K
--
K
T
Q
G
D
F
V
L
N
V
E
E
G
E
F
S
D
S
E
I
L
V
M
M
G
E
N
G
T
G
K
T
T
L
I
K
-
L
L
A
G
A
L
K
P
D
E
G
Q
D
I
P
K
L
N
V
-
S
M
K
P
Q
K
I
A
P
KFPGT
V
R
Q
L
F
F
K
K
I
R
-
G
Q
F
L
--
N
--------
P
Q
F
Q
T
D
------------------------------------------------------------------
V
V
K
P
L
R
----
I
-------
D
D
--------------------------
I
--
I
D
Q
E
V
Q
H
-----------------------------------------------
L
S
G
G
E
L
Q
R
V
A
I
V
L
A
L
G
I
P
A
D
I
Y
L
I
D
E
P
S
A
Y
L
D
S
E
----
Q
R
I
I
C
S
K
V
I
R
R
F
I
L
H
N
K
K
---
T
----
A
F
I
V
E
H
D
F
I
M
A
-
T
Y
L
A
D
K
V
I
-
V
F
E
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
57.63
22%
-57
- C1 -
4CRM
3
RLI1_YEAST
P:
[103-543]
-----------------------------------------------------------------------------------------------------------------------------------------
G
Q
-
V
L
G
L
V
G
T
N
G
I
G
K
S
T
A
L
K
I
--
L
A
G
K
---
Q
K
P
N
L
--
G
R
F
--------------------------
D
D
P
P
-
E
W
-
Q
--
E
I
I
K
Y
--
F
R
G
S
E
L
Q
N
Y
F
T
K
M
L
-----
E
D
D
I
K
A
-
I
I
K
P
Q
Y
V
D
N
I
P
R
AIKGPVQKVGE
L
L
----
K
L
R
M
E
K
S
P
E
D
V
K
R
Y
I
K
I
L
-----
Q
L
E
N
V
--
L
--
K
R
D
I
E
K
L
S
G
G
E
L
Q
R
F
A
I
G
M
S
C
V
Q
E
A
D
V
Y
M
F
D
E
P
S
S
Y
L
D
V
K
QRL----
N
A
A
Q
I
I
R
S
L
--
L
A
P
----
T
K
---
Y
V
I
C
V
E
H
D
L
S
V
L
D
Y
L
S
D
F
V
C
I
I
------------
Y
G
V
P
S
V
Y
G
V
V
T
L
P
A
S
VR
E
G
I
N
I
F
L
D
G
H
I
P
A
E
N
L
---------------------
R
F
R
T
E
A
L
Q
F
R
I
A
D
A
T
--
E
D
L
Q
N
D
---------
S
A
S
R
-----------------
A
F
S
Y
P
S
L
--
K
--
K
T
Q
G
D
F
V
L
N
V
E
E
G
E
F
SDSEI
L
V
M
M
G
E
N
G
T
G
K
T
T
L
I
K
-
L
L
A
G
A
L
K
P
D
E
G
QDIP
K
L
N
V
-
S
M
K
PQKIAPKFPGT
V
R
Q
L
F
F
K
K
I
R
-
G
Q
F
L
--
N
--------
P
Q
F
Q
T
D
------------------------------------------------------------------
V
V
K
P
L
R
----
I
-------
D
D
--------------------------
I
--
I
D
Q
E
V
Q
H
-----------------------------------------------
L
S
G
G
E
L
Q
R
V
A
I
V
L
A
L
G
I
P
A
D
I
Y
L
I
D
E
P
S
A
Y
L
D
S
E
----
Q
R
I
I
C
S
K
V
I
R
R
F
ILHN
K
K
---
T
----
A
F
I
V
E
H
D
F
I
M
A
-
T
Y
L
A
D
K
V
I
-
V
F
E
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
57.31
25%
-71
- C1 -
3BK7
4
?
A:
[83-546]
----------------------------------------------------------------------------------------
A
I
S
I
V
N
L
P
E
Q
L
D
-
E
D
CVHRYG
V
-
N
A
F
V
L
Y
R
L
P
I
V
K
D
-------------
G
M
-
V
V
G
I
V
G
P
N
G
T
G
K
T
T
A
V
K
I
--
L
A
G
Q
---
L
I
P
N
L
--
C
E
D
N
D
S
W
----------
D
---
N
V
--
I
R
A
F
R
G
N
E
-
L
Q
-
N
--
Y
F
E
R
L
K
N
G
E
I
R
P
V
V
K
P
----------
Q
Y
V
D
L
L
-
P
K
A
V
--
K
-----------------
G
----
K
V
R
E
L
---
L
K
K
V
D
E
V
G
K
F
E
E
V
V
K
E
L
E
L
E
N-
V
L-
D
R
E
L
H
Q
L
S
G
G
E
L
Q
R
V
A
I
A
A
A
L
L
R
K
A
H
F
Y
F
F
D
E
P
S
S
Y
L
D
I
R
-------
Q
R
L
K
V
A
R
V
I
--
R
R
L
A
N
E
-
G
K
---
A
V
L
V
V
E
H
D
L
A
V
L
D
Y
L
S
D
V
I
H
V
V
Y
G
E
-----
P
-
G
V
Y
G
I
F
S
K
P
K
G
T
R
N
G
I
------
N
E
F
L
Q
G
Y
L
K
D
E
---------------
N
V
R
F
R
------------
P
---
Y
E
--
I
R
F
T
K
L
SE-------
R
V
D
V
E
R
E
T
------
L
V
E
Y
P
R
L
V
K
D
-
Y
G
S
-----
F
K
L
E
V
E
P
G
E
I
R
K
G
E
V
-----
I
G
I
V
G
P
N
G
I
G
K
T
T
F
V
K
-
M
L
A
G
V
E
E
P
T
E
G
----
K
V
E
W
-
D
L
-------------
T
V
A
Y
K
P
Q
Y
I
-
K
A
E
---
Y
--------
E
G
T
V
Y
E
------------------------------------------------------------------
L
L
S
K
I
D
----
S
-------
S
K
-----------------------------
L
-
N
S
N
F
Y
K
T
E
-------
L
L
K
P
L
G
I
I
--
D
-----
L
-
Y
D
--------
R
N
V
----
E
D
L
S
G
G
E
L
Q
R
V
A
I
A
A
T
L
L
R
D
A
D
I
Y
L
L
D
E
P
S
A
Y
L
D
V
E
----
Q
R
L
A
V
S
R
A
I
R
H
L
M
E
K
N
E
K
---
T
----
A
L
V
V
E
H
D
V
L
M
I
-
D
Y
V
S
D
R
L
I
-
V
F
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
56.17
23%
-56
- C1 -
1YQT
4
?
A:
[24-538]
-------------------------------------------------------------------------------------------
E
E
D
C
V
H
R
Y
G
-
V
-------
N
-
A
F
-
V
L
Y
R
L
P
V
-
V
K
-------------
E
G
M
V
V
G
I
V
G
P
N
G
T
G
K
S
T
A
V
K
I
--
L
A
G
Q
---
L
I
P
N
L
--
C
G
D
-------------------------
N
D
S
W
D
-
G
V
-
I
--
R
A
F
R
G
--
N
E
L
Q
N
Y
F
E
K
L
K
N
G
E
-----
I
R
P
V
V
K
-
P
Q
Y
V
D
L
I
-
P
K
A
V
-----------
K
G
----
K
V
I
E
L
L
K
K
A
D
E
T
G
K
L
E
E
V
V
K
A
L
E
-
L
E
N
V
--
L
--
E
R
E
I
Q
H
L
S
G
G
E
L
Q
R
V
A
I
A
A
A
L
L
R
N
A
T
F
Y
F
F
D
E
P
S
S
Y
L
D
I
R
-------
Q
R
L
N
A
A
R
A
I
--
R
R
L
----
S
E
E
G
K
S
V
L
V
V
E
H
D
L
A
V
L
D
Y
L
S
D
I
I
H
V
V
Y
G
E
P
G
V
----------
Y
G
I
F
S
Q
P
K
G
T
R
--
N
G
I
N
E
F
L
R
G
Y
L
K
D
E
N
------------------------------
V
R
F
R
P
Y
E
--
I
K
F
T
K
T
---------
G
E
R
V
E
I
E
R
------
E
T
L
V
T
Y
P
R
L
V
K
D
Y
G
--
S
--
F
R
L
E
V
E
P
G
E
I
K
K
G
E
V
-----
I
G
I
V
G
P
N
G
I
G
K
T
T
F
V
K
M
L
A
-
G
V
E
E
P
T
E
G
----
K
I
E
W
---
D
-----------
L
T
V
A
Y
K
P
Q
Y
I
--
K
A
D
--
Y
--------
E
G
T
V
Y
E
------------------------------------------------------------------
L
L
S
K
I
D
----
A
-------
S
K
--------------------------
L
----
N
S
N
F
Y
K
T
E
-------
L
L
K
P
L
G
I
I
--
D
----
L
Y
-
D
R
--------
E
V
N
----
E
-
L
S
G
G
E
L
Q
R
V
A
I
A
A
T
L
L
R
D
A
D
I
Y
L
L
D
E
P
S
A
Y
L
D
V
E
----
Q
R
L
A
V
S
R
A
I
R
H
L
M
---
E
K
N
E
K
T
----
A
L
V
V
E
H
D
--
V
L
M
I
D
Y
V
S
D
R
L
M
V
F
E
G
E
--
P
G
K
Y
G
R
A
--------------------------------
L
P
P
M
G
M
R
E
G
M
N
R
F
L
A
S
I
--
G
I
T
F
R
R
----
D
P
-----------
D
T
G
R
P
R
A
N
K
E
G
S
V
K
D
R
E
Q
K
E
K
G
E
Y
Y
Y
I
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
Fugue
56.04
19%
-34
- C1 -
4F4C
3
PGP1_CAEEL
A:
[4-1306]
N
G
S
L
R
Q
S
L
R
T
L
D
S
F
SLA
P
E
D
V
L
K
T
A
I
K
T
V
E
D
Y
EGDNIDSNG
E
I
K
I
TRDEVV
N
K
V
S
I
P
Q
L
Y
RYTT
T
L
E
K
L
L
L
F
I
G
T
L
V
A
V
I
T
G
A
G
L
P
L
M
S
I
L
Q
G
K
V
S
Q
A
F
I
-
N
-------
E
-
Q
I
V
I
N
------
N
N
-------------
G
S
-
T
F
L
P
T
G
Q
N
Y
T
K
T
D
F
E
H
D
V
M
N
V
V
W
S
---
Y
A
A
M
T
--
V
G
M
W
A
A
G
----------
Q
--
I
T
V
--
T
C
Y
L
Y
V
A
E
-
Q
M
-
N
--
N
R
L
R
R
--
E
F
V
K
S
I
L
R
Q
E
I
S
W
F
-----
D
T
N
H
S
G
-
T
L
A
T
K
L
F
D
N
L
E
R
-----------
V
K
----
E
G
T
G
D
K
I
G
M
A
F
Q
Y
L
S
Q
F
I
T
G
F
I
V
A
F
T
H
S
--
W
--
Q
L
T
L
V
M
L
A
V
-
T
P
I
Q
A
L
C
G
F
A
I
A
K
S
M
S
T
F
A
I
R
E
T
L
R
Y
A
K
A
G
-------
K
V
--
V
E
E
T
I
--
S
S
I
----
R
T
---
V
V
S
-
L
N
G
L
R
Y
E
L
E
R
Y
S
T
A
V
E
E
A
K
K
A
G
V
L
K
G
L
-
F
L
G
I
S
F
G
A
M
Q
A
S
N
F
I
S
F
--
A
L
A
F
Y
I
G
V
G
W
V
H
D
G
S
L
N
F
G
D
M
L
T
T
F
S
S
V
M
M
G
S
-
M
A
L
G
L
A
G
P
Q
L
A
V
L
G
T
A
Q
G
A
--
A
S
G
I
Y
E
V
LDRKPVID
S
S
S
K
A
G
R
K
DMKIK
G
D
I
T
V
E
N
V
H
F
T
Y
P
S
R
--
P
DV
P
I
L
R
G
M
N
L
R
V
N
A
G
Q
T
-----
V
A
L
V
G
S
S
G
C
G
K
S
T
I
I
S
-
L
L
L
R
Y
Y
D
V
L
K
G
----
K
I
T
I
D
G
V
D
-----------
V
R
D
I
N
L
E
F
L
R
-
K
N
V
A
--
V
V
S
Q
E
P
A
L
F
N
C
T
I
E
E
------------------------------------------------------------------
N
I
S
L
G
K
----
E
-------
G
I
--------------------------
T
--
R
E
E
M
V
A
A
C
K
M
-------
A
N
A
E
K
F
I
K
T
L
P
----
N
G
-
Y
N
--------
T
L
V
GDR
G
T
Q
L
S
G
G
Q
K
Q
R
I
A
I
A
R
A
L
V
R
N
P
K
I
L
L
L
D
E
A
T
S
A
L
D
A
E
----
S
E
G
I
V
Q
Q
A
L
D
K
A
----
A
K
G
R
-
T
----
T
I
I
I
A
H
R
---
L
-
S
T
I
R
N
A
D
L
-
I
I
S
C
K
--
N
G
Q
V
V
E
V
G
D
H
R
A
L
M
A
Q
Q
G
L
Y
Y
D
L
V
T
A
Q
T
F
T
D
A
V
D
S
A
A
E
G
E
R
I
-
G
-
K
D
A
-
L
S
R
L
K
Q
E
L
E
E
N
N
A
Q
K
TN
L
F
E
I
L
Y
H
A
R
P
H
A
L
S
L
F
I
G
M
S
T
A
T
I
G
G
F
I
Y
P
T
Y
S
V
F
F
T
S
F
M
N
V
F
A
G
N
P
A
D
F
L
S
Q
G
H
F
W
A
L
M
F
L
V
L
A
A
A
Q
G
I
C
S
F
L
M
T
F
F
M
G
I
A
S
E
S
L
T
R
D
L
R
N
K
L
F
R
N
V
L
S
QHIGFFDSPQNA
S
G
K
I
S
T
R
L
A
T
D
V
P
N
L
R
T
A
I
D
F
R
F
S
T
V
I
T
T
L
V
S
M
V
A
G
I
G
L
A
F
F
Y
G
W
Q
M
A
L
L
I
I
A
I
L
P
I
V
A
F
G
Q
Y
L
R
G
RRFTGKNVKSA
S
E
F
A
D
S
G
K
I
A
I
E
A
I
E
N
V
R
T
V
Q
A
L
AR
E
D
T
F
Y
E
N
F
C
E
K
L
D
I
P
H
K
E
A
I
K
E
A
F
I
Q
G
L
S
Y
G
C
A
S
S
V
L
Y
L
L
N
T
C
A
Y
R
M
G
L
A
L
I
I
TDPPTMQ
P
M
R
V
L
R
V
M
Y
A
I
T
I
S
T
S
TLGFAT
S
Y
F
P
E
Y
A
K
A
T
F
A
G
G
I
I
F
G
M
L
R
KISKIDSLSLAGEKKKLYGK
V
I
F
K
N
V
R
F
A
Y
PERPEIEILK
G
L
S
F
S
V
E
PG
Q
T
L
A
L
V
G
P
S
GCGKST
V
V
A
L
L
E
RFYDTL
G
G
E
I
F
I
DGSEIKTLN
P
E
H
T
R
S
Q
I
A
I
V
S
Q
E
P
T
L
F
DCS
I
A
E
N
I
I
YGLDPSSVT
M
A
Q
V
E
E
A
A
R
L
A
NI
H
N
F
I
A
E
LPEGFETRVGDRGTQLS
G
G
Q
K
Q
R
I
A
I
A
R
A
L
V
R
NPK
I
L
L
L
D
EATSALDT
E
S
E
K
V
V
Q
E
A
L
D
R
A
R
EG
R
T
C
I
V
I
A
HRLNTVMNAD
C
I
A
V
V
S
NGTII
E
K
G
T
H
T
Q
L
M
S
E
K
10
PsiBlast_PDB
55.77
22%
-58
- C1 -
3OZX
5
?
A:
[30-462]
-----------------------------------------------------------------------------------------------------------------------------------------------
V
L
G
K
N
G
V
G
K
T
T
V
L
K
I
--
L
A
G
E
---
I
I
P
N
F
--
G
D
----
P
----------
N
--
S
K
V
--
G
K
-
D
E
V
L
K
-
R
F
-
R
--
G
K
E
I
Y
--
N
Y
F
K
E
L
Y
S
N
E
L
K
I
V
H
KIQY
V
E
Y
A
S
K
-
F
L
K
G
T
V
N
E
I
L
T
K
-----------
I
D
----
E
R
G
K
K
D
E
V
K
E
L
L
N
M
T
N
L
-------------
W
--
N
K
D
A
N
I
L
S
G
G
G
L
Q
R
L
L
V
A
A
S
L
L
R
E
A
D
V
Y
I
F
D
Q
P
S
S
Y
L
D
V
R
-------
E
R
M
N
M
A
K
A
I
R
E
L
L
K
----
N
K
---
Y
V
I
V
V
D
H
D
L
I
V
L
D
Y
L
T
D
L
I
------
H
I
I
Y
G
E
----
S
S
V
Y
G
R
V
S
K
S
Y
A
A
R
--
V
G
I
N
N
F
L
K
G
Y
L
P
A
E
N
M
K
I
R
P
D
E
I
K
F
M
L
K
----------
L
K
T
K
M
K
W
T
K
I
I
K
K
L
--
G
D
F
Q
L
V
---------
V
D
N
G
E
A
K
E
-------------------------------------
G
E
I
-----
I
G
I
L
G
P
N
G
I
G
K
T
T
F
A
R
-
I
L
V
G
E
I
T
A
D
E
G
----
S
V
-------------------------------
T
--
P
--------
E
K
Q
I
L
-------------------------------------------------------------------
S
Y
K
P
Q
R
----
I
-------
F
P
--------------------------
N
--
Y
D
G
T
V
Q
Q
Y
L
E
N
A
SKDAL
S
T
S
S
W
F
F
E
--
E
----
V
T
-
K
R
LNLHRLLE
S
N
V
----
N
D
L
S
G
G
E
L
Q
K
L
Y
I
A
A
T
L
A
K
E
A
D
L
Y
V
L
D
Q
P
S
S
Y
L
D
V
E
E
R
Y
I
V
A
K
A
I
K
R
V
T
R
E
R
----
K
A
---
V
----
T
F
I
I
D
H
D
L
S
I
H
-
D
Y
I
A
D
R
I
I
-
V
F
K
G
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
55.14
21%
-67
- C1 -
3J16
2
RLI1_YEAST
B:
[82-560]
---------------------------------------------------------------------------------------------
H
V
T
H
R
Y
S
-
A
-------
N
S
F
K
L
H
R
L
P
-
T
P
-
R
P
-------------
G
Q
-
V
L
G
L
V
G
T
N
G
I
G
K
S
T
A
L
K
I
--
L
A
G
K
---
Q
K
P
N
L
--
G
R
F
D
D
P
P
----------
E
W
Q
E
I
I
--
K
Y
F
-
R
G
S
E
-
L
Q
-
N
Y
F
T
K
M
L
E
--
D
D
I
K
A
I
I
K
P
Q
Y
-
V
D
-----
N
I
P
R
A
I
-
K
G
---------
P
-----------
V
Q
----
K
V
G
E
L
L
K
-
L
R
M
E
K
S
P
E
D
V
K
R
Y
I
K
I
L
Q
L
E
N-
V
L-
K
R
D
I
E
K
L
S
G
G
E
L
Q
R
F
A
I
G
M
S
C
V
Q
E
A
D
V
Y
M
F
D
E
P
S
S
Y
L
D
V
K
-------
Q
R
L
N
A
A
Q
I
I
--
R
S
L
L
A
P
-
T
K
---
Y
V
I
C
V
E
H
D
L
S
V
L
D
Y
L
S
D
F
V
C
I
I
Y
G
V
P
S
V
-
Y
--
G
V
V
T
L
P
A
S
V
R
E
G
-
I
--------
N
I
F
L
D
G
H
I
P
A
E
--
N
L
R
F
-----------
R
T
---
E
A
L
Q
--
F
R
-
I
A
D
A
T
E
D
-----------------
L
Q
N
D
S
A
S
R
------
A
F
S
Y
P
S
L
K
K
T
-
Q
G
---
D
--
F
V
L
N
V
E
E
G
E
F
S
D
S
E
I
-----
L
V
M
M
G
E
N
G
T
G
K
T
T
L
I
K
-
L
L
A
G
A
L
K
P
D
E
G
----
Q
D
I
P
---
K
-----------
L
N
V
S
M
K
P
Q
K
I
-
A
P
K
---
F
--------
P
G
T
V
R
Q
------------------------------------------------------------------
L
F
F
K
K
I
----
R
-------
G
Q
------------------------------
F
L
N
P
Q
F
Q
T
D
-------
V
V
K
P
L
R
I
D
-------
D
I
-
I
D
--------
Q
E
V
----
Q
H
L
S
G
G
E
L
Q
R
V
A
I
V
L
A
L
G
I
P
A
D
I
Y
L
I
D
E
P
S
A
Y
L
D
S
E
----
Q
R
I
I
C
S
K
V
I
R
R
F
I
L
H
N
K
K
---
T
----
A
F
I
V
E
H
D
F
I
M
A
-
T
Y
L
A
D
K
V
I
-
V
F
E
-
G
I
P
S
K
N
-
A
H
A
R
A
P
E
S
L
L
T
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
55.02
29%
-74
- C1 -
3BK7
2
?
A:
[223-548]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
E
L
H
Q
L
S
G
G
E
L
Q
R
V
A
I
A
A
A
L
L
R
K
A
H
F
Y
F
F
D
E
P
S
S
Y
L
D
I
R
Q
R
L
----
K
V
A
R
V
I
R
R
L
--
A
N
E
----
G
K
---
A
V
L
V
V
E
H
D
L
A
V
L
D
Y
L
S
D
V
I
------
H
V
V
Y
G
E
P
G
V
Y
G
I
F
----
S
K
P
K
G
T
R
--
N
G
I
N
E
F
L
Q
G
Y
L
K
D
E
N
V
R
F
R
P
-
Y
E
I
R
F
T
K
L
S
E
R
V
D
V
E
R
E
T
L
V
E
Y
P
--
R
L
V
K
D
Y
--
G
S
F
K
L
E
--------------------------------
V
E
P
G
E
--------------
I
R
K
G
E
V
-----
I
G
I
V
G
P
N
G
I
G
K
T
T
F
V
K
-
M
L
A
G
V
E
E
P
T
E
G
----
K
V
E
---
W
D
-----------
L
T
V
A
Y
K
P
Q
Y
--
I
K
A
E
--
Y
--------
E
G
T
V
Y
E
------------------------------------------------------------------
L
L
S
K
---------------------------------------------
I
D
S
S
K
L
N
S
N
F
-------
Y
K
T
E
-
L
L
K
--
P
LGII
D
L
-
Y
D
--------
R
N
V
----
E
D
L
S
G
G
E
L
Q
R
V
A
I
A
A
T
L
L
R
D
A
D
I
Y
L
L
D
E
P
S
A
Y
L
D
V
E
Q
R
L
A
V
S
R
A
I
R
H
L
M
E
K
N
----
E
K
---
T
----
A
L
V
V
E
H
D
V
L
M
I
-
D
Y
V
S
D
R
L
I
-
V
F
E
G
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
54.34
28%
-102
- C1 -
3RLF
3
MALK_ECOLI
A:
[2-220]
---------------------------------------------------------------------------------------
A
S
V
Q
L
Q
N
V
T
K
A
W
G
-
E
-------
V
-
V
V
S
K
D
I
N
L
D
I
-
H
E
-------------
G
E
-
F
V
V
F
V
G
P
S
G
C
G
K
S
T
L
L
R
M
--
I
A
G
L
---
E
T
I
T
S
--
G
D
L
F
I
G
E
KRMNDTPPA-
E
--
R
G
V
--
G
M
V
F
Q
S
Y
A
-
L
Y
-
P
--
H
L
S
V
A
--
E
N
M
S
F
G
L
K
L
A
G
----------------------------------------------------
A
K
K
E
V
I
N
Q
R
V
N
Q
V
A
E
V
L
Q
L
A
H-
L
L-
D
R
K
P
K
A
L
S
G
G
Q
R
Q
R
V
A
I
G
R
T
L
V
A
E
P
S
V
F
L
L
D
E
P
L
S
N
L
D
A
A
-------
L
R
V
Q
M
R
I
E
I
--
S
R
L
H
K
R
L
G
R
---
T
M
I
Y
V
T
H
D
Q
V
E
A
M
T
L
A
D
K
I
V
V
L
D
A
G
R
V
A
Q
V
--
G
K
P
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
53.72
29%
-62
- C1 -
3J15
2
?
B:
[209-534]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
E
L
H
Q
L
S
G
G
E
L
Q
R
V
A
I
A
A
A
L
L
R
K
A
H
F
Y
F
F
D
E
P
S
S
Y
L
D
I
R
Q
R
L
----
K
V
A
R
V
I
R
R
L
--
A
N
E
----
G
K
---
A
V
L
V
V
E
H
D
L
A
V
L
D
Y
L
S
D
V
I
------
H
V
V
Y
G
E
P
G
V
Y
G
I
F
----
S
K
P
K
G
T
R
--
N
G
I
N
E
F
L
Q
G
Y
L
K
D
E
N
V
R
F
R
P
-
Y
E
I
R
F
T
K
L
S
E
R
V
D
V
E
R
E
T
L
V
E
Y
P
--
R
L
V
K
D
Y
--
G
S
F
K
L
E
--------------------------------
V
E
P
G
E
--------------
I
R
K
G
E
V
-----
I
G
I
V
G
P
N
G
I
G
K
T
T
F
V
K
-
M
L
A
G
V
E
E
P
T
E
G
----
K
V
E
---
W
D
-----------
L
T
V
A
Y
K
P
Q
Y
--
I
K
A
E
--
Y
--------
E
G
T
V
Y
E
------------------------------------------------------------------
L
L
S
K
---------------------------------------------
I
D
S
S
K
L
N
S
N
F
-------
Y
K
T
E
-
L
L
K
--
P
LGII
D
L
-
Y
D
--------
R
N
V
----
E
D
L
S
G
G
E
L
Q
R
V
A
I
A
A
T
L
L
R
D
A
D
I
Y
L
L
D
E
P
S
A
Y
L
D
V
E
Q
R
L
A
V
S
R
A
I
R
H
L
M
E
K
N
----
E
K
---
T
----
A
L
V
V
E
H
D
V
L
M
I
-
D
Y
V
S
D
R
L
I
-
V
F
E
G
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
53.14
20%
-40
- C1 -
3J16
4
RLI1_YEAST
B:
[1-608]
-------------------------MS
D
K
N
S
R
I
A
I
V
S
ADKCKPKKCRQ
E
C
K
R
S
C
P
V
V
K
T
GKLC
I
E
V
T
PTSK
I
A
F
I
S
EILCIGCG
I
C
V
K
K
C
P
F
D
A
I
Q
I
I
N
L
-
P
-------
T
-
N
L
E
A
H
V
T
H
R
Y
-
S
A
N
S
F
K
L
H
R
L
P
T
P
R
P
G
Q
-
V
L
G
L
V
G
T
N
G
I
G
K
S
T
A
L
K
I
--
L
A
G
K
---
Q
K
P
N
L
--
G
R
F
D
D
P
P
--------------
E
W
--
Q
E
I
I
K
Y
F
R
-
G
S
-
E
--
L
Q
N
Y
F
--
T
K
M
L
E
D
-----
D
I
K
-----
A
I
I
K
P
Q
-
Y
V
D
N
I
P
R
A
I
K
G
P
-----------
V
Q
----
K
V
G
E
L
L
K
L
R
M
-
E
K
S
P
E
D
V
K
R
Y
I
K
I
L
Q
L
E
--
N
VL
K
R
D
I
E
K
L
S
G
G
E
L
Q
R
F
A
I
G
M
S
C
V
Q
E
A
D
V
Y
M
F
D
E
P
S
S
Y
L
D
V
K
-------
Q
R
L
N
A
A
Q
I
I
--
R
S
L
L
A
P
-
T
K
---
Y
V
I
C
V
E
H
D
L
S
V
L
D
Y
L
S
D
F
V
C
I
I
Y
G
V
-----
P
-
S
V
Y
G
V
V
----
T
L
P
A
S
V
R
--
E
G
I
N
I
F
L
D
G
H
I
P
A
E
N
L
R
F
R
T
E
A
L
Q
F
R
I
A
D
A
T
E
D
L
Q
N
D
S
A
S
R
A
F
S
Y
P
S
L
K
K
T
Q
--
G
D
F
V
L
N
---------
V
E
-------------------------------------
E
G
E
F
S
D
S
E
I
-----
L
V
M
M
G
E
N
G
T
G
K
T
T
L
I
K
-
L
L
A
G
A
L
K
P
D
E
G
----
Q
D
I
---
P
K
-----------
L
N
V
S
M
K
P
Q
K
I
-
A
P
K
F
--
P
--------
G
T
V
R
Q
L
------------------------------------------------------------------
F
F
K
K
I
R
----
G
-------
Q
F
--------------------------
L
--
N
P
Q
F
Q
T
D
V
V
K
-------
P
L
R
I
D
D
I
I
--
D
----
Q
E
-------------
V
----
Q
H
L
S
G
G
E
L
Q
R
V
A
I
V
L
A
L
G
I
P
A
D
I
Y
L
I
D
E
P
S
A
Y
L
D
S
E
----
Q
R
I
I
C
S
K
V
I
R
R
F
----
I
L
---
H
N
K
K
T
A
F
I
V
E
H
D
F
I
M
A
-
T
Y
L
A
D
K
V
I
-
V
F
E
G
---------------------
I
P
S
K
N
A
H
A
R
A
P
E
S
L
L
T
G
C
N
R
F
L
K
N
-
L
-
N
V
T
-
F
R
R
D
P
N
S
--
F
R
P
R
I
N
----
K
L
D
S
Q
M
D
-
K
E
Q
K
S
--------------------
S
G
N
Y
F
F
L
D
N
T
G
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
53.11
27%
-91
- C1 -
2IT1
-
?
A:
[3-224]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
K
L
E
N
I
V
K
K
-
F
G
N
--
F
--
T
A
L
N
N
I
N
L
K
I
K
D
G
E
F
-----
M
A
L
L
G
P
S
G
S
G
K
S
T
L
L
Y
-
T
I
A
G
I
Y
K
P
T
S
G
----
K
I
Y
F
-
D
E
K
DVTELPPKD--
R
N
V
G
L
V
F
Q
N
W
-
A
-
L
Y
--
P
--------
H
M
T
V
Y
K
------------------------------------------------------------------
N
I
A
F
P
L
----
E
-------
L
R
--------------------------
K
AP
R
E
E
I
D
K
K
V
R
E
-------
V
A
K
M
L
H
I
D
--
K
-----
L
-
L
N
--------
R
Y
P
----
W
Q
L
S
G
G
Q
Q
Q
R
V
A
I
A
R
A
L
V
K
E
P
E
V
L
L
L
D
E
P
L
S
N
L
D
A
L
----
L
R
L
E
V
R
A
E
L
K
R
L
Q
K
E
L
G
I
---
T
----
T
V
Y
V
T
H
D
Q
A
E
A
-
L
A
M
A
D
R
I
A
-
V
I
R
-
E
--
G
E
I
L
Q
V
-
G
T
P
D
E
V
Y
Y
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
52.79
28%
-103
- C1 -
1Z47
1
?
A:
[13-233]
---------------------------------------------------------------------------------------
M
T
I
E
F
V
G
V
E
K
I
Y
P
G
G
-------
A
-
R
S
V
R
G
V
S
F
Q
I
-
R
E
-------------
G
E
-
M
V
G
L
L
G
P
S
G
S
G
K
T
T
I
L
R
L
--
I
A
G
L
---
E
R
P
T
K
--
G
D
V
W
I
G
G
KRVTDLPPQ-
K
--
R
N
V
--
G
L
V
F
Q
N
Y
A
-
L
F
-
Q
--
H
M
T
V
Y
--
D
N
V
S
F
G
L
R
E
K
R
----------------------------------------------------
V
P
K
D
E
M
D
A
R
V
R
E
L
L
R
F
M
R
L
E
S-
Y
A-
N
R
F
P
H
E
L
S
G
G
Q
Q
Q
R
V
A
L
A
R
A
L
A
P
R
P
Q
V
L
L
F
D
E
P
F
A
A
I
D
T
Q
-------
I
R
R
E
L
R
T
F
V
--
R
Q
V
H
D
E
M
G
V
---
T
S
V
F
V
T
H
D
Q
E
E
A
L
E
V
A
D
R
V
L
V
L
H
E
G
N
V
E
Q
F
--
G
T
P
E
E
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
52.31
26%
-106
- C1 -
1V43
-
?
A:
[10-230]
--------------------------------------------------------------------------------------
M
V
E
V
K
L
E
N
L
T
K
R
F
G
-
N
-------
F
-
T
A
V
N
K
L
N
L
T
I
-
K
D
-------------
G
E
-
F
L
V
L
L
G
P
S
G
C
G
K
T
T
T
L
R
M
--
I
A
G
L
---
E
E
P
T
E
--
G
R
I
Y
F
G
D
RDVTYLPPK-
D
--
R
N
I
--
S
M
V
F
Q
----------
H
M
T
V
Y
--
E
N
I
A
F
P
L
--
K
K
----------------------------------------------------
F
P
K
D
E
I
D
K
R
V
R
W
A
A
E
L
L
Q
I
E
E-
L
L-
N
R
Y
P
A
Q
L
S
G
G
Q
R
Q
R
V
A
V
A
R
A
I
V
V
E
P
D
V
L
L
M
D
E
P
L
S
N
L
D
A
K
-------
L
R
V
A
M
R
A
E
I
--
K
K
L
Q
Q
K
L
K
V
---
T
T
I
Y
V
T
H
D
Q
V
E
A
M
T
M
G
D
R
I
A
V
M
N
R
G
Q
L
L
Q
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------