@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA3115: (2016-02-14 )
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTDLKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQAPAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSPREALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKAIADTLAVTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGTPAAAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVLLMILSRRNAQKEKEEAQAFAADTGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAPQVEKTTAQTSDALGEADIYIAYGRFNQAAELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELDSFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGGDDVQADLKSDSGALDDLTLDSDLDLAASTPADKPVDDLDFGLDFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLSLADEPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSATPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLARAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250...--....260.......--270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.....---.---.580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750.......760.......770.......780.......790.......800.......810.......820.......830.......840.......850.......860.......870.......880.......890.......900.......910.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MV
R
L
R
T
L
V
R
A
I
A
A
A
S
V
L
T
S
G
M
AHGLG
L
G
E
I
T
L
K
S
ALNQPLDA
E
I
E
L
L
E
V
R
DLGSGEVIPSLA
S
P
E
E
F
S
K
AGV
D
R
L
Y
Y
L
TD
L
K
F
T
P
V
VKPNG
K
S
V
I
R
VTSSKPVQ
E
P
Y
L
N
F
L
V
Q
V
LWPNG
R
L
L
R
E
Y
T
V
L
LDPPLYSPQAAASAPQAPVSAPRATGAPRAPQAPAPVRTTAPAGSD
T
Y
R
TVSN
D
T
L
W
E
I
A
QRNRTDRVS
V
P
Q
A
M
L
A
F
Q
ELNPG
A
F
VDGN
I
N
RLKSG
Q
V
L
RIP
T
E
Q
Q
M
L
E
R
S
P
R
E
A
L
S
Q
V
Q
AQNQSWR--GSRNPAAGSAGARQ--LDATQRNAAGSAPSKVDATD
N
L
R
L
VSGEGKASKGADKGGKGD
S
K
A
I
A
D
T
L
A
V
T
K
E
S
L
D
S
T
RR
E
N
E
E
L
Q
S
R
M
Q
D
L
Q
S
Q
L
D
K
L
Q
K
L
I
Q
LK
D
A
Q
L
A
K
L
Q
G
QLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGTPAAAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQP
A
P
S
F
L
D
E
L
LAN
P
L
W
L
A
V
IG
G
S
A
L
L
A
L
L
V
L
L
M
I
L
SRRNA
Q
K
E
K
E
E
A
Q
A
FAADTGE
E
Q
E
D
A
L
DLGKDGFDDLTLDEPEPQVAAVAPQ
V
E
KTTAQTSDALGEA
D
I
Y
I
A
YG
R
F
N
Q
A
A
E
L
L
Q
N
A
IYDEPQR---
T
---
D
L
R
L
K
L
M
E
V
Y
A
EMGDREGF
A
R
Q
E
N
E
L
R
E
IGGAQ
P
Q
V
E
Q
L
K
S
RY
P
A
M
V
A
V
A
A
V
A
G
LAGAKL
A
Q
D
E
L
DSFSLDDLSLDDSGHAAKPDAAGQDL
D
D
A
FDL
S
L
DDLGG
D
D
V
Q
A
D
LKSDSGALDDLTLDSDLDLAASTPADKPV
D
D
L
D
FGL
D
F
A
E
L
AETPSQPKHDDLG
D
F
S
LDLDAPEDKLSDD
D
F
L
L
SLNDEVPAAAPADN
E
F
T
LDTEAAEEPALSLPDDFDLSLADEPTEPAAPEKG
E
D
S
F
A
A
Q
L
D
E
V
S
A
Q
L
D
E
L
A
S
NLDEPKSATPSFSA
E
D
A
A
V
A
SALDGDADDDFDFLSGA
D
E
A
A
T
K
L
D
L
A
R
A
Y
I
DMGDSE
G
A
R
D
I
L
D
E
V
L
AEGND
S
Q
Q
A
E
A
R
E
L
L
E
RLA
2
PsiBlast_PDB
69.72
98%
64
- C2 -
4MAL
-
?
A:
[7-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
F
D
F
L
S
G
A
D
E
A
A
T
K
L
D
L
A
R
A
Y
I
D
M
G
D
S
E
G
A
R
D
I
L
D
E
V
L
A
E
G
N
D
S
Q
Q
A
E
A
R
E
L
L
E
R
L
A
40
Fugue
67.60
11%
19
- C2 -
4Z29
-
?
A:
[136-311]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
L
R
V
A
S
D
I
T
L
S
P
T
Y
P
D
L
V
W
E
N
M
G
A
Q
Y
G
Y
T
L
V
I
D
G
T
S
H
A
V
P
A
T
S
G
E
M
V
R
F
R
V
P
S
L
T
P
G
A
H
S
F
G
V
T
V
T
E
G
G
Q
A
V
G
Q
T
---
E
K
G
G
T
I
V
W
L
S
A
T
E
D
K
A
L
V
D
G
V
A
R
V
K
A
A
S
T
G
D
E
F
A
L
G
N
Y
L
D
S
K
G
V
T
V
A
A
M
D
A
Y
R
K
H
F
A
S
H
K
D
D
---
N
---
D
M
R
P
L
L
I
K
T
Y
N
D
L
K
L
R
D
L
R
Q
K
E
A
L
V
Y
N
E
Q
L
E
G
N
P
G
F
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
64.49
100%
89
- C2 -
4MBQ
-
?
A:
[16-64]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
A
A
T
K
L
D
L
A
R
A
Y
I
D
M
G
D
S
E
G
A
R
D
I
L
D
E
V
L
A
E
G
N
D
S
Q
Q
A
E
A
R
E
L
L
E
R
L
A
1
PsiBlast_PDB
64.49
100%
89
- C2 -
4MBQ
-
?
A:
[16-64]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
A
A
T
K
L
D
L
A
R
A
Y
I
D
M
G
D
S
E
G
A
R
D
I
L
D
E
V
L
A
E
G
N
D
S
Q
Q
A
E
A
R
E
L
L
E
R
L
A
33
HHSearch
59.15
14%
42
* C2 *
3AS5
1
?
A:
[81-136]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
G
L
T
Y
V
Q
V
Q
K
Y
D
L
A
V
P
L
L
I
K
V
A
E
A
N
P
I
N
---
F
---
N
V
R
F
R
L
G
V
A
L
D
N
L
G
R
F
D
E
A
I
D
S
F
K
I
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
57.41
20%
59
- C2 -
1NA3
2
?
A:
[14-69]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
G
N
A
Y
Y
K
Q
G
D
Y
D
E
A
I
E
Y
Y
Q
K
A
L
E
L
D
P
N
N
---
A
---
E
A
W
Y
N
L
G
N
A
Y
Y
K
Q
G
D
Y
D
E
A
I
E
Y
Y
Q
K
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
55.12
18%
57
- C2 -
1HXI
1
?
A:
[20-70]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
M
E
E
G
L
S
M
L
K
L
A
N
L
A
E
A
A
L
A
F
E
A
V
C
Q
K
E
P
E
R
---
E
---
E
A
W
R
S
L
G
L
T
Q
A
E
N
E
K
D
G
L
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
54.71
14%
54
- C2 -
2XCB
1
?
A:
[58-115]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
A
C
R
Q
S
L
G
L
Y
E
Q
A
L
Q
S
Y
S
Y
G
A
L
M
D
I
N
E
---
P
---
R
F
P
F
H
A
A
E
C
H
L
Q
L
G
D
L
D
G
A
E
S
G
F
Y
S
A
R
A
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
53.76
20%
50
- C2 -
2PL2
-
?
A:
[31-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
L
R
L
G
V
Q
L
Y
A
L
G
R
Y
D
A
A
L
T
L
F
E
R
A
L
K
E
N
P
Q
D
---
P
---
E
A
L
Y
W
L
A
R
T
Q
L
K
L
G
L
V
N
P
A
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
53.43
28%
64
- C2 -
1ZBP
-
?
A:
[3-60]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
W
K
N
A
L
S
E
G
Q
L
Q
Q
A
L
E
L
L
I
E
A
I
K
A
S
P
K
D
---
A
---
S
L
R
S
S
F
I
E
L
L
C
I
D
G
D
F
E
R
A
D
E
Q
L
M
Q
S
I
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
53.13
16%
67
- C2 -
3GYZ
2
IPGC_SHIFL
A:
[76-133]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
A
I
Y
Q
I
K
E
Q
F
Q
Q
A
A
D
L
Y
A
V
A
F
A
L
G
K
N
D
---
Y
---
T
P
V
F
H
T
G
Q
C
Q
L
R
L
K
A
P
L
K
A
K
E
C
F
E
L
V
I
Q
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
51.94
20%
50
- C2 -
2FF4
-
EMBR_MYCTU
A:
[178-233]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
A
E
I
A
C
G
R
A
S
A
V
I
A
E
L
E
A
L
T
F
E
H
P
Y
R
---
E
---
P
L
W
T
Q
L
I
T
A
Y
Y
L
S
D
R
Q
S
D
A
L
G
A
Y
R
R
V
K
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
51.91
33%
96
- C2 -
4UQZ
1
?
A:
[10-57]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
L
D
D
A
L
K
A
L
Q
E
Q
V
R
S
Q
P
S
N
---
A
---
T
L
R
I
F
L
F
Q
L
L
A
V
M
G
Q
---
W
A
R
A
Q
N
Q
L
K
V
V
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
51.72
33%
86
- C2 -
4UQY
-
?
A:
[13-60]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
L
D
D
A
L
K
A
L
Q
E
Q
V
R
S
Q
P
S
N
---
A
---
T
L
R
I
F
L
F
Q
L
L
A
V
M
G
Q
---
W
A
R
A
Q
N
Q
L
K
V
V
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
50.93
14%
82
- C2 -
1WA8
-
B:
[601-695]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
E
Q
Q
W
N
F
A
G
I
E
A
A
A
S
A
I
Q
G
N
V
T
S
I
H
S
L
L
D
E
G
K
Q
S
L
T
K
L
A
A
A
W
G
G
S
G
S
E
A
Y
Q
G
V
Q
Q
K
W
D
A
T
A
T
E
L
N
N
A
L
Q
N
L
A
R
T
I
S
E
A
G
Q
A
M
A
S
T
E
G
N
V
T
G
M
F
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
50.52
18%
60
- C2 -
2XEV
3
?
A:
[8-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
F
D
A
L
K
N
G
K
Y
D
D
A
S
Q
L
F
L
S
F
L
E
L
Y
P
N
G
VY
T
P
---
N
A
L
Y
W
L
G
E
S
Y
Y
A
T
R
N
F
Q
L
A
E
A
Q
F
R
D
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
49.22
17%
59
- C2 -
2R5S
1
?
A:
[8-66]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
L
K
Q
V
S
E
L
L
Q
Q
G
E
H
A
Q
A
L
N
V
I
Q
T
L
S
D
E
L
Q
S
R
---
G
---
D
V
K
L
A
K
A
D
C
L
L
E
T
K
Q
F
E
L
A
Q
E
L
L
A
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
49.15
13%
61
- C2 -
2YHC
1
BAMD_ECOLI
A:
[151-213]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
S
V
A
E
Y
Y
T
E
R
G
A
W
V
A
V
V
N
R
V
E
G
M
L
R
D
Y
P
D
T
---
Q
A
T
R
D
A
L
P
L
M
E
N
A
Y
R
Q
M
Q
M
N
A
Q
A
E
K
V
A
K
I
I
A
A
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
47.92
19%
84
- C2 -
2I1K
-
?
A:
[303-455]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
M
K
A
Q
A
R
E
E
K
L
A
K
-
Q
A
Q
R
----EI
A
A
R
E
R
A
E
K
K
Q
Q
E
Y
Q
D
R
L
R
Q
M
Q
E
E
M
E
R
S
Q
A
N
L
L
E
A
Q
D
M
I
L
R
L
E
E
Q
L
R
Q
L
Q
A
A
K
E
E
L
E
Q
R
Q
N
E
L
Q
A
M
M
Q
R
L
E
E
T
----------
L
E
D
E
I
R
A
K
Q
E
E
V
S
R
I
Q
Q
E
V
E
L
K
D
S
E
T
R
R
L
Q
E
E
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
47.38
33%
202
- C3 -
5BV2
-
?
P:
[7-58]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
P
H
Q
H
Q
S
P
L
H
D
S
S
E
A
K
P
G
M
D
S
L
A
---
P
E
D
G
S
H
R
P
A
A
E
P
T
P
P
G
A
Q
P
T
A
P
G
S
L
K
A
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------