@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA3144: (2016-02-14 )
MKKRFTEEQILDFLKQAEAGVPVKELCRRHSFSDATFYT
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10......-.--.--20------.........30........-----------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKKRF
T
E
E
Q
I
L
D
F
L
K
QA-E--A--G-------V
P
V
K
E
L
C
R
RHSFSDATFYT-----------------------------------------------------------------------------------------------------------------------------
5
HHSearch
68.59
18%
-116
- C1 -
1HLV
2
CENPB_HUMAN
A:
[5-44]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
Q
L
T
F
R
E
K
S
R
I
I
Q
E
V
-
E
--
E
N
P
D
-------
L
R
K
G
E
I
A
R
R
F
N
I
P
P
S
T
L
S
T
-----------------------------------------------------------------------------------------------------------------------------
2
HHSearch
64.11
18%
-133
- C1 -
2JRT
-
?
A:
[30-68]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
R
W
V
A
S
R
K
A
A
V
V
K
A
V
-
I
--
H
G-
L
-------
I
T
E
R
E
A
L
D
R
Y
S
L
S
E
E
E
F
A
L
-----------------------------------------------------------------------------------------------------------------------------
28
Fugue
63.46
17%
-104
* C1 *
1HLV
2
CENPB_HUMAN
A:
[1-131]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGP
K
R
R
Q
L
T
F
R
E
K
S
R
I
I
Q
E
V
-
E
--
E
--
N
PD-----
L
R
K
G
E
I
A
R
R
F
N
I
P
P
S
T
L
S
T
I
L
K
N
K
R
A
I
L
A
S
E
R
K
Y
GVASTCRKTNKLSPY
D
K
L
E
G
L
L
I
A
W
F
Q
Q
I
R
A
A
G
L
P
V
K
G
I
I
L
K
E
K
A
L
R
I
A
E
E
L
GMDDFTAS
N
G
W
L
D
R
F
R
R
R
RS--------------------------------------
14
HHSearch
62.61
17%
-128
- C1 -
1JKO
2
C:
[6-40]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
K
H
E
Q
E
Q
I
S
R
L
L
-
E
--
K
--
G
-------
H
P
R
Q
Q
L
A
I
I
F
G
I
G
V
S
T
L
Y
R
-----------------------------------------------------------------------------------------------------------------------------
3
HHSearch
59.90
18%
-104
- C1 -
2JN6
-
?
A:
[3-42]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
K
T
Y
S
E
E
F
K
R
D
A
V
A
L
Y
-
E
--
N
SD
G
-------
A
S
L
Q
Q
I
A
N
D
L
G
I
N
R
V
T
L
K
N
-----------------------------------------------------------------------------------------------------------------------------
4
HHSearch
56.17
13%
-111
- C1 -
2GLO
2
?
A:
[3-44]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
I
F
T
P
H
F
K
L
Q
V
L
E
S
Y
-
R
--
N
D-
N
DCK----
G
N
Q
R
A
T
A
R
K
Y
N
I
H
R
R
Q
I
Q
K
-----------------------------------------------------------------------------------------------------------------------------
26
Fugue
56.11
30%
-86
- C1 -
4RNZ
9
?
A:
[1-369]
M
E
R
L
V
W
D
KLT
L
L
G
F
L
E
K
N
HIPQ
K
L
Y
Y
N
LS
S
Q
D
K
E
L
S
A
E
IQSN
V
T
Y
Y
T
L
R
D
ANNTLI
Q
A
L
I
P
ISQD
L
Q
I
H
I
Y
K
K
GE
D
Y
F
L
D
F
I
P
I
I
F
T
R
K
E
K
T
L
L
L
S
L
QTS
P
Y
Q
D
I
I
K
A
TND
P
L
L
A
N
Q
L
M
N
A
Y
K
KS
V
P
F
K
R
LVKN
D
K
I
A
I
V
Y
T
R
D
Y
R
VGQAF
G
Q
P
T
I
K
M
A
M
V
S
S
RS
N
Q
Y
Y
L
F
S
H
SNG
H
Y
Y
D
SKAQEVAGFLLETPVKYTRISSPFSYGRFHRPHY
G
V
D
Y
A
A
K
HGS
L
I
H
S
A
S
D
G
R
V
G
F
M
G
V
K
AGYG
K
V
V
E
I
H
L
NE
L
R
L
V
Y
A
HMSAFANGLKKG
S
F
V
K
KGQII
G
R
V
G
STG
P
H
L
H
F
G
V
Y
K
NSRPINPLGYIRT
A
K
S
K
L
H
G
K
Q
R
E
V
F
L
E
K
A
-
Q
R
-
S
--
K
-------
Q
K
L
E
E
L
L
K
T
H
S
F
E
K
N
S
F
Y
L
LEGFLEHHHH-------------------------------------------------------------------------------------------------------------------
11
HHSearch
56.11
14%
-114
- C1 -
1K78
-
PAX5_HUMAN
A:
[32-67]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
P
D
V
V
R
Q
R
I
V
E
L
A
-
H
--
Q
--
G
-------
V
R
P
C
D
I
S
R
Q
L
R
V
S
H
G
C
V
S
K
-----------------------------------------------------------------------------------------------------------------------------
9
HHSearch
55.84
8%
-125
- C1 -
2COB
-
A:
[12-49]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Q
Y
N
S
E
I
L
E
E
A
I
S
V
V
M
S
--
G
--
K
-------
M
S
V
S
K
A
Q
S
I
Y
G
I
P
H
S
T
L
E
Y
-----------------------------------------------------------------------------------------------------------------------------
10
HHSearch
55.32
14%
-118
- C1 -
1PDN
2
PRD_DROME
C:
[16-52]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
L
P
N
N
I
R
L
K
I
V
E
M
A
-
A
--
D
--
G
-------
I
R
P
C
V
I
S
R
Q
L
R
V
S
H
G
C
V
S
K
-----------------------------------------------------------------------------------------------------------------------------
12
HHSearch
53.24
11%
-114
- C1 -
2ELH
-
DAN_DROME
A:
[21-56]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
L
T
P
R
D
K
I
H
A
I
Q
R
I
-
H
--
D
--
G
-------
E
S
K
A
S
V
A
R
D
I
G
V
P
E
S
T
L
R
------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
52.87
11%
-118
- C1 -
2RN7
-
?
A:
[4-49]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
T
R
F
S
P
E
V
R
Q
R
A
V
R
M
V
-
L
--
E
S
-
Q
G
E
Y
DS
Q
W
A
T
I
C
S
I
A
P
K
I
G
C
T
P
E
T
L
R
V
-----------------------------------------------------------------------------------------------------------------------------
8
HHSearch
49.42
14%
-100
- C1 -
1U78
-
TC3A_CAEEL
A:
[5-41]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
L
S
D
T
E
R
A
Q
L
D
V
M
K
-
L
--
L
--
N
-------
V
S
L
H
E
M
S
R
K
I
S
R
S
R
H
C
I
R
V
-----------------------------------------------------------------------------------------------------------------------------
30
Fugue
48.48
17%
-64
- C1 -
1BW6
-
CENPB_HUMAN
A:
[1-56]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGP
K
R
R
Q
L
T
F
R
E
K
S
R
I
I
Q
E
V
-
E
--
E
--
N
PD-----
L
R
K
G
E
I
A
R
R
F
N
I
P
P
S
T
L
S
T
I
L
K
N
K
RAILASE-----------------------------------------------------------------------------------------------------------------
1
HHSearch
43.82
13%
-88
- C1 -
2OA4
-
?
A:
[30-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
T
R
R
W
V
A
S
R
K
I
A
V
V
R
G
V
-
I
--
Y
G-
L
-------
I
T
L
A
E
A
K
Q
T
Y
G
L
S
D
E
E
F
N
S
-----------------------------------------------------------------------------------------------------------------------------
7
HHSearch
43.16
14%
-92
- C1 -
1TC3
2
TC3A_CAEEL
C:
[6-40]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
D
T
E
R
A
Q
L
D
V
M
K
-
L
--
L
--
N
-------
V
S
L
H
E
M
S
R
K
I
S
R
S
R
H
C
I
R
V
-----------------------------------------------------------------------------------------------------------------------------
21
HHSearch
42.38
20%
-128
- C1 -
3KKC
-
?
A:
[32-51]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-------
I
T
V
Q
D
V
I
G
L
A
N
V
G
R
S
T
F
Y
S
-----------------------------------------------------------------------------------------------------------------------------
20
HHSearch
41.57
13%
-104
- C1 -
3FRW
-
?
A:
[55-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
T
--
D
--
K
-------
R
T
Y
L
D
I
S
E
K
T
G
A
S
T
A
T
I
S
R
-----------------------------------------------------------------------------------------------------------------------------
17
HHSearch
40.12
28%
-68
- C1 -
2LVS
-
?
A:
[60-95]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
T
E
E
E
L
A
T
I
R
E
L
Y
-
L
--
K
--
G
-------
A
T
V
Y
E
I
A
R
Q
L
G
R
P
E
S
T
I
Y
Y
-----------------------------------------------------------------------------------------------------------------------------
24
Fugue
38.37
23%
-100
- C1 -
3O60
2
?
A:
[3-184]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NYVKV
H
Q
P
L
NVD
L
R
T
Q
K
T
Q
T
K
L
Y
T
V
L
E
R
F
Y
V
E
D
-
R
TF
E
--
S
-------
I
S
I
K
D
L
C
E
Q
A
R
V
S
R
A
T
F
Y
R
H
HKE
I
I
Q
V
I
E
V
Q
I
L
R
T
M
Q
Y
F
S
L
E
F
D
Q
I
ILT
K
E
N
I
Q
R
L
I
L
R
T
I
Q
K
N
P
L
L
F
Q
V
I
F
W
S
RA
E
N
I
F
I
D
V
V
S
G
E
I
L
R
I
S
L
L
K
EVSFSD
S
K
F
M
P
N
C
F
A
R
M
I
L
S
L
A
A
E
I
Q
Q
SN
K
D
Y
T
N
D
Q
L
V
E
L
I
Q
E
A
A
R
F
L
Q