@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA3340: (2016-02-16 )
MPGKALRVMLCAWSCLLAGQASALGVGDIILHSALNQPLDADIELLDVGDLGADEIEVRLAGADVFAAAGVERLQFLNELRFSPVLQGRGGNRIHVSSIRPVQEPYLNFLVEVARPNGRIVREFTVLLDPLGYTPRMLPAARSGIEPQRQSSTPVPAPRSAAVVVDPALLEPGDEYLARPSDNLWAISGRLRGAGNADRAQLMEALYQLNPQAFVNADRHRLKAGARLRLPAGYQPERGAPGAVKEAAVEVLPPADAAVVENAPAALVEAQRQADAEAEALARQREELSQRMDDLQRQLQALQEQLQQRDHQVAELQQQLARRQAVRPAAPPPAAAAPSVAQPVETPTDSQYWRWMIVLLLVLALLGVLLLRRRREEAPVPAVEPKRRVALNLPLRRAPRPPAAAPAPAKVEEQARPPVAAPSSPPPSPPPAPAAAPRAAMAAADKLDGADIYIAYGRYGQARDLLRQVLAEQPQRLSARMKLLLVLAELGDAAGFDALAEETLASGGNPEAIDELRGRYPALLQMPATETPAATTKDDDWSDLPLAESPVLQQPDATSGADGFGDLNLDLDLDWGALENPLDNPDLPRRAAAGKAEPAEEPLAFESNLHELPDVAEYEHLELDQPEPATVPPEEASASLDRARACIDSGDLDQASRILRLVVAHGDPWQKAEARELLALIA
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......-----260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470....---.---..480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MPG
K
A
L
R
V
M
L
C
A
W
S
C
L
LAGQ
A
S
AL
G
V
G
D
I
I
L
H
S
A
LNQPLDAD
I
E
L
L
D
VGDLGA
D
E
I
E
V
R
LAG
A
D
V
F
A
A
A
G
V
E
R
L
Q
F
L
N
E
LRFS
P
V
LQGRGG
N
R
I
H
V
SSIRP
V
Q
E
P
Y
L
N
F
L
V
E
VARPN
G
R
I
V
R
E
F
T
V
L
LDPLGYTPRM
L
P
A
A
RSGIEPQRQSSTPVPAPRS
A
A
V
V
V
D
P
A
LLEPG
D
E
Y
LARPSD
N
L
W
A
I
S
G
R
LRGAGN
A
D
R
A
Q
L
M
E
A
L
Y
QL
N
P
Q
A
F
VNA
D
R
H
R
LKAG
A
R
LRLPAGYQPERGAPG
A
V
K
E
A
A
V
E
VLPPA
D
A
A
V
-----VENA
P
A
A
L
V
E
A
Q
R
QAD
A
E
A
E
A
L
A
R
Q
R
E
E
L
S
Q
R
M
D
D
L
Q
R
Q
L
Q
A
L
Q
E
Q
L
Q
QRD
H
Q
V
A
E
L
Q
Q
Q
L
A
R
R
QAVRPAAPPPAAAAPSVAQPVETPT
D
S
Q
Y
W
R
W
M
I
V
L
L
L
V
L
A
L
L
G
V
L
L
L
R
R
RREEAPVPAVEPK
R
R
V
A
L
NLPLRRAPRPPAAAPAPA
K
V
E
EQARPPVAAPSSPPPSPPPAPAAA
P
R
A
A
M
A
A
ADKLDGA
D
I
Y
I
A
YGRYG
Q
A
R
D
L
L
R
Q
V
L
A
EQ
P
Q
R
---
L
---
S
A
R
M
K
L
L
L
V
L
A
E
LGDAAG
F
D
A
L
A
E
E
T
L
ASGG
N
P
E
A
I
D
E
L
RGRY
P
A
L
L
QMPATETPAATTKDDDWSDLPLAESPVLQQPDATSGADGFGD
L
N
L
D
L
D
LDWGALENPLDNPDLPRRAAAGKAEPAEEP
L
A
F
E
S
N
L
H
ELPDVAE
Y
E
HLELDQPEPATV
P
P
E
E
A
S
A
S
L
D
R
A
R
A
CIDSG
D
L
D
Q
A
S
R
I
L
R
L
V
VAHGDPW
Q
K
A
E
A
R
E
L
L
A
LIA
1
PsiBlast_PDB
81.22
53%
33
- C1 -
4MAL
-
?
A:
[16-64]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
A
A
T
K
L
D
L
A
R
A
Y
I
D
M
G
D
S
E
G
A
R
D
I
L
D
E
V
L
A
E
G
N
D
S
Q
Q
A
E
A
R
E
L
L
E
R
L
A
40
Fugue
78.47
53%
47
- C1 -
4MBQ
-
?
A:
[16-64]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
A
A
T
K
L
D
L
A
R
A
Y
I
D
M
G
D
S
E
G
A
R
D
I
L
D
E
V
L
A
E
G
N
D
S
Q
Q
A
E
A
R
E
L
L
E
R
L
A
2
PsiBlast_PDB
78.47
53%
47
- C1 -
4MBQ
-
?
A:
[16-64]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
A
A
T
K
L
D
L
A
R
A
Y
I
D
M
G
D
S
E
G
A
R
D
I
L
D
E
V
L
A
E
G
N
D
S
Q
Q
A
E
A
R
E
L
L
E
R
L
A
26
HHSearch
70.75
15%
7
- C1 -
2YHC
1
BAMD_ECOLI
A:
[151-212]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
S
V
A
E
Y
Y
T
E
R
G
A
W
V
A
V
V
N
R
V
E
G
M
L
R
D
Y
P
D
T
---
Q
A
T
R
D
A
L
P
L
M
E
N
A
Y
R
Q
M
Q
M
N
A
Q
A
E
K
V
A
K
I
I
A
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
70.30
24%
9
- C1 -
3AS5
1
?
A:
[81-129]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
G
L
T
Y
V
Q
V
Q
K
Y
D
L
A
V
P
L
L
I
K
V
A
E
A
N
P
I
N
---
F
---
N
V
R
F
R
L
G
V
A
L
D
N
L
G
R
F
D
E
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
69.50
18%
14
- C1 -
2FF4
-
EMBR_MYCTU
A:
[178-232]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
A
E
I
A
C
G
R
A
S
A
V
I
A
E
L
E
A
L
T
F
E
H
P
Y
R
---
E
---
P
L
W
T
Q
L
I
T
A
Y
Y
L
S
D
R
Q
S
D
A
L
G
A
Y
R
R
V
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
68.90
19%
40
- C1 -
2XEV
2
?
A:
[7-57]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
A
F
D
A
L
K
N
G
K
Y
D
D
A
S
Q
L
F
L
S
F
L
E
L
Y
P
N
G
VY
T
P
---
N
A
L
Y
W
L
G
E
S
Y
Y
A
T
R
N
F
Q
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
67.73
28%
42
- C1 -
2PL2
-
?
A:
[31-83]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
L
R
L
G
V
Q
L
Y
A
L
G
R
Y
D
A
A
L
T
L
F
E
R
A
L
K
E
N
P
Q
D
---
P
---
E
A
L
Y
W
L
A
R
T
Q
L
K
L
G
L
V
N
P
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
66.49
14%
23
- C1 -
1XNF
-
NLPI_ECOLI
A:
[82-137]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
G
I
Y
L
T
Q
A
G
N
F
D
A
A
Y
E
A
F
D
S
V
L
E
L
D
P
T
Y
---
N
---
Y
A
H
L
N
R
G
I
A
L
Y
Y
G
G
R
D
K
L
A
Q
D
D
L
L
A
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
65.14
22%
26
- C1 -
1ZBP
-
?
A:
[3-56]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
W
K
N
A
L
S
E
G
Q
L
Q
Q
A
L
E
L
L
I
E
A
I
K
A
S
P
K
D
---
A
---
S
L
R
S
S
F
I
E
L
L
C
I
D
G
D
F
E
R
A
D
E
Q
L
M
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
65.08
15%
18
- C1 -
2XCB
1
?
A:
[57-110]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
G
A
C
R
Q
S
L
G
L
Y
E
Q
A
L
Q
S
Y
S
Y
G
A
L
M
D
I
N
E
---
P
---
R
F
P
F
H
A
A
E
C
H
L
Q
L
G
D
L
D
G
A
E
S
G
F
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
64.80
21%
107
- C1 -
3QH9
3
A:
[14-79]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
E
-----
K
Q
R
K
A
E
E
L
L
Q
E
L
R
H
L
K
I
K
V
E
E
L
E
N
E
R
N
Q
Y
E
W
K
L
K
A
T
K
A
E
V
A
Q
L
Q
E
Q
V
A
L
K
D
A
E
I
E
R
L
H
S
Q
L
S
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
64.15
18%
61
- C1 -
1HXI
1
?
A:
[19-68]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
M
E
E
G
L
S
M
L
K
L
A
N
L
A
E
A
A
L
A
F
E
A
V
C
Q
K
E
P
E
R
---
E
---
E
A
W
R
S
L
G
L
T
Q
A
E
N
E
K
D
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
63.79
19%
8
- C1 -
1NA3
2
?
A:
[14-66]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
G
N
A
Y
Y
K
Q
G
D
Y
D
E
A
I
E
Y
Y
Q
K
A
L
E
L
D
P
N
N
---
A
---
E
A
W
Y
N
L
G
N
A
Y
Y
K
Q
G
D
Y
D
E
A
I
E
Y
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
61.32
16%
32
- C1 -
2XEV
1
?
A:
[44-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
L
G
E
S
Y
Y
A
T
R
N
F
Q
L
A
E
A
Q
F
R
D
L
V
S
R
Y
P
T
H
---
D
K
A
A
G
G
L
L
K
L
G
L
S
Q
Y
G
E
G
K
N
T
E
A
Q
Q
T
L
Q
Q
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
61.24
25%
124
- C1 -
3Q8T
-
BECN1_RAT
A:
[199-261]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
K
N
R
K
V
V
A
E
N
L
E
K
V
Q
A
E
A
E
R
L
D
Q
E
E
A
Q
Y
Q
R
E
Y
S
E
F
K
R
Q
Q
L
E
L
D
D
E
L
K
S
V
E
N
Q
M
R
Y
A
Q
M
Q
L
D
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
60.72
17%
101
- C1 -
2W83
2
JIP4_HUMAN
C:
[1-67]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
M
D
P
E
F
-----
M
G
R
E
V
E
N
L
I
L
E
N
T
Q
L
L
E
T
K
N
A
L
N
I
V
K
N
D
L
I
A
K
V
D
E
L
T
C
E
K
D
V
L
Q
G
E
L
E
A
V
K
Q
A
K
L
K
L
E
E
K
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_CBE
59.31
32%
149
- C1 -
3GP4
1
?
B:
[70-125]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
F
R
E
G
E
H
T
L
E
A
R
A
E
L
L
K
K
Q
R
I
E
L
K
N
R
I
D
V
M
Q
E
A
L
D
R
L
D
F
K
I
D
N
Y
D
T
H
L
I
P
A
Q
E
E
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
58.84
32%
150
- C1 -
3GP4
1
?
A:
[70-125]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
F
R
E
G
E
H
T
L
E
A
R
A
E
L
L
K
K
Q
R
I
E
L
K
N
R
I
D
V
M
Q
E
A
L
D
R
L
D
F
K
I
D
N
Y
D
T
H
L
I
P
A
Q
E
E
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
57.21
21%
64
- C1 -
2YR0
-
?
A:
[127-237]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
R
V
L
K
P
G
G
A
L
L
E
G
W
D
Q
A
E
A
S
P
E
W
T
L
Q
E
R
W
R
A
F
A
A
E
E
G
F
P
V
E
R
G
L
H
A
K
R
L
K
E
V
E
E
A
L
R
R
L
G
--
L
K
P
R
T
R
E
V
A
R
W
R
E
E
R
T
P
R
E
A
L
E
A
L
S
E
R
L
Y
S
F
T
Q
G
L
P
E
P
V
H
A
R
V
M
E
R
L
W
A
W
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------