@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA3605: (2016-02-19 )
MADPPRPVERAMRSQALRADVLMLITAMIWGVSFVAQRLGMDAIGPFLYTGLRFVLGALVLVPLLMLRSRRDGAQPFNRGQLLAGVILGVALTTGINLQQVGLLFTSVTNSGFITGLYVIVVPLLGLLFGQRTGAGTWLGASLAVLGMALLSIGPGFQVASGDWLQLAGAVVWGAHVLLVGLFASRYDPIRLAFLQFATCAAVSLLLALVFEEIHWDAIVQAGPALLYGGLLGVGTGFTLQVVAQKHAIASHAAIILSLEAVFAAIAGALFLAETLHLRGYFGCALMLAGMLVAQLWPRKLAAEARPA
Atome Classification :
(18 SA)
-------------------------------------------------------------------------------------....---.....10......---..20-----------...-..--------...--------------30--.----------------........40-------........50........60.----..-------..----...70-........80....-------------....90.-....------...100.......110.-----......120..---.-....---130..-----------...-...140.....----..150.......160.--........170.......180------.......190-.-.---.-----------------------.------...200-.......210......-.-220-..-----.---......230.......240-.......250...-....------260.......270-....------..-.-280.......290.......---------300......-------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------MADP---
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M
----
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RSRR-DGAQPFN
R
G
Q
L
L
A
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-------------
V
I
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G
V
A
L
-TTGI------
N
L
Q
Q
V
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L
F
TSVTNSG
F
-----
I
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L
Y
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I
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---
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-
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LF---G-QRT-----------GAG-
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----
M
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SIGPGFQVA--S--G
D
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---------
K
L
AAEARPA-------------------------------------
21
Fugue
91.49
19%
-120
- C2 -
3THI
1
THI1_PANTH
A:
[1-362]
---------------------------------------------------------------------------I
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LPEALG------------------------
13
Fugue
88.72
18%
-115
* C6 *
1LGR
2
?
?:
[101-468]
--------------------------------------------------------------------------------------
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------
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A
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---
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P
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L
YYSV-----------------------------
20
Fugue
73.87
16%
-135
- C3 -
4O7O
1
MAK1_MYCTU
A:
[6-454]
------------------------------------------------------------------TLATKLP
W
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QRWYA
G
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ETRHRPGW
L
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19
Fugue
73.47
15%
-152
- C4 -
4MTN
2
?
A:
[5-406]
-----------------------------GN
E
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PSE
V
-----------------------
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E
E
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I
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K
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L
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R
A
T
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K
A
ERQSQE-------------------------
16
Fugue
68.11
19%
-166
- C1 -
1AZO
11
MUTH_ECOLI
A:
[7-232]
--------------------------------------------------------------------------------------------
P
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--------
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Y
---
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----------------
L
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------------------------------------------------
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-----------------------------------------------
N
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--------------------------
R
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Y
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K
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N
F
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A
L
L
A
R
H
F
L
I
Q
-------------------------------------------------------
15
Fugue
67.58
12%
-123
* C4 *
1KPL
4
CLCA_SALTY
A:
[31-460]
T
P
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--------------
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V
-
I
M
S
S
------
I
V
F
R
I
F
N
G
E
A
P
I
I
E
V
G
K
-----
L
S
D
A
P
V
N
T
L
W
L
---
Y
-
L
I
L
G
---
I
-
I
F
G
-----------
V
V
G
-
P
V
F
N
S
L
V
L
R
T
Q
----
D
M
F
Q
R
F
H
G
G
E
I
K
K
--
W
--
V
L
M
G
G
A
I
G
G
L
C
G
I
L
G
L
I
E
P
A
A
------
A
G
G
G
F
N
L
I
P
I
-
A
-
A
---
A
-----------------------
G
------
N
F
S
V
G
L
-
L
L
F
I
F
I
T
R
V
V
T
T
L
L
C
F
-
S
-
S
---
G
A
PGGI
F
A
---
P
M
L
A
L
G
T
L
L
G
T
A
F
G
M
A
A
A
V
-
L
F
P
Q
Y
H
L
E
A
G
T
F
A
-
I
A
G
M
------
G
A
L
M
A
A
S
V
R
A
P
L
T
-
G
I
V
L
------
V
L
-
E
-
M
T
D
N
Y
Q
L
I
L
P
M
I
I
T
C
L
G
A
T
L
---------
L
A
Q
F
L
G
G
K
P
L
Y
S
T
I
L
A
R
T
L
A
K
Q
D
A
E
Q--------------------
14
Fugue
45.21
27%
-96
- C6 -
1UMQ
-
A:
[22-81]
-------------------------------------------------------------------------------------
L
A
K
G
ES
L
P
P
P
P
E
N
P
M
S
A
D
R
V
---
R
W
E
H
-----------
I
Q
R
-
I
Y
--------
E
M
C
--------------
D
---
R
N---------------
V
S
E
T
A
R
R
L
N
M
H
R
-----
R
T
L
Q
R
I
L
A
K
R
S
P
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
44.12
19%
-199
- C- -
3B5D
1
EMRE_ECOLI
A:
[31-105]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
S
V
G
T
I
I
C
Y
C
A
S
F
W
L
L
A
-
Q
T
L
A
Y
I
P
T
G
I
A
Y
A
I
W
S
G
V
------
G
I
V
L
I
S
L
L
S
W
G
F
F
-
G
Q
R
L
------
D
L
-
P
-
A
I
I
G
M
M
L
I
C
A
G
V
L
I
I
N
L
L
S
--------------------------------------------------------
3
PsiBlast_PDB
44.05
24%
-70
- C5 -
2ONJ
-
Y1866_STAAM
A:
[243-327]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
N
A
Y
S
F
A
A
I
N
-----
T
V
T
D
I
G
P
I
I
V
I
G
--
V
--
G
A
Y
L
A
I
S
G
S
I
T
V
G
T
L
A
A
F
V
G
Y
------
L
E
L
L
F
G
P
L
R
R
-
L
-
V
---
A
-----------------------
S
------
F
T
T
L
T
Q
-
S
F
A
S
M
D
R
V
F
Q
L
I
D
E
D
Y
-
D
-
I
---
K
N
-----
G
-------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
43.26
24%
-74
* C5 *
2HYD
-
Y1866_STAAM
A:
[243-327]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
N
A
Y
S
F
A
A
I
N
-----
T
V
T
D
I
G
P
I
I
V
I
G
--
V
--
G
A
Y
L
A
I
S
G
S
I
T
V
G
T
L
A
A
F
V
G
Y
------
L
E
L
L
F
G
P
L
R
R
-
L
-
V
---
A
-----------------------
S
------
F
T
T
L
T
Q
-
S
F
A
S
M
D
R
V
F
Q
L
I
D
E
D
Y
-
D
-
I
---
K
N
-----
G
-------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
40.42
17%
-153
- C- -
3B5D
1
EMRE_ECOLI
A:
[29-105]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
W
P
S
-------------
V
G
T
I
I
C
Y
-
C
A
S
F
------
W
L
L
A
Q
T
L
A
Y
I
P
T
G
I
A
Y
A
I
----
W
S
G
V
G
I
V
L
I
S
L
---
L
-
S
W
G
F
---
F
G
Q
R
L
-----------
D
L
P
-
A
I
I
G
M
M
L
I
C
A
G
----
V
L
I
I
N
L
L
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
39.89
24%
-69
- C5 -
4A82
-
Y1866_STAAM
A:
[243-327]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
N
A
Y
S
F
A
A
I
N
-----
T
V
T
D
I
G
P
I
I
V
I
G
--
V
--
G
A
Y
L
A
I
S
G
S
I
T
V
G
T
L
A
A
F
V
G
Y
------
L
E
L
L
F
G
P
L
R
R
-
L
-
V
---
A
-----------------------
S
------
F
T
T
L
T
Q
-
S
F
A
S
M
D
R
V
F
Q
L
I
D
E
D
Y
-
D
-
I
---
K
N
-----
G
-------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
35.08
15%
-130
- C5 -
2I68
-
EMRE_ECOLI
A:
[4-104]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
Y
L
G
G
A
I
L
A
E
----
V
I
-------
G
T
----
T
L
M
------------------------------
V
G
T
I
I
C
Y
-
C
A
S
F
------
W
L
L
A
Q
T
L
A
-----
I
A
Y
A
I
----
W
S
G
V
G
I
V
L
I
S
L
---
L
-
S
W
G
F
---
F
G------------------
A
I
I
G
M
M
L
I
C
A
G
----
V
L
I
I
N
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
9.35
54%
235
- C5 -
2A7S
-
PCC5_MYCTU
A:
[519-542]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
T
-
R
-
G
Y
I
G
T
A
L
R
L
L
E
R
K
I
A
Q
L
P
P
K
---------
K
---------------------------------------------
12
HHSearch
8.04
6%
254
- C5 -
1WAZ
-
?
A:
[50-67]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
A
I
F
I
G
L
T
I
Y
A
I
Q
R
K
---------
R
Q
--------------------------------------------
10
HHSearch
6.95
40%
321
- C5 -
2JP3
-
FXYD4_RAT
A:
[24-38]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
G
L
L
C
I
A
G
I
A
L
A
L
S
----------------------------------------------------------
9
HHSearch
4.07
27%
0
- C- -
3WU2
-
PSBT_THEVL
T:
[17-9]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
F
F
F
A
I
F
F
-
R
E
P
P
------
R
I
------------------------------------------------------------------------------
11
HHSearch
3.44
13%
281
- C5 -
2ZXE
-
?
G:
[25-40]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
A
A
V
L
C
V
I
G
I
I
I
L
L
A
----------------------------------------------------------